Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 8.0e-218 760.4 450 100.0
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 4.5e-189 664.8 551 75.1
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 9.5e-187 657.1 556 75.5
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 6.1e-186 654.4 563 74.6
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 6.8e-185 651.0 557 72.5
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 4.4e-184 648.3 564 71.6
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.4e-161 573.5 444 79.3
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 5.1e-156 555.1 603 60.4
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.5e-152 543.5 573 59.7
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 8.4e-151 537.7 562 64.4
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.1e-146 523.1 613 54.2
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 1.5e-144 516.9 537 65.4
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.0e-140 504.2 617 54.1
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 4.5e-136 488.8 614 52.4
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 8.4e-135 484.6 605 52.7
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 7.1e-134 481.5 614 51.5
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 3.2e-118 429.5 604 49.2
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 7.7e-104 381.7 619 43.8
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 5.2e-100 369.0 638 44.0
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 9.1e-97 358.2 297 70.0
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 4.5e-96 355.9 297 69.7
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 7.2e-86 322.0 665 39.4
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 6.1e-85 318.9 665 39.1
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 3.0e-84 316.6 651 40.1
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 8.8e-84 315.1 662 37.9
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 7.5e-83 312.0 590 39.7
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 7.5e-83 312.0 665 39.5
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.7e-82 309.7 665 39.4
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 8.3e-82 308.5 665 38.3
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 4.1e-81 306.2 678 38.3
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.6e-80 304.3 665 36.2
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 2.0e-80 303.9 658 39.2
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 2.0e-80 303.9 669 36.2
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 3.5e-80 303.1 665 36.2
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 3.5e-80 303.1 654 36.1
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 3.5e-80 303.1 662 36.6
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 5.9e-80 302.4 678 37.9
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 7.7e-80 302.0 666 36.6
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.0e-79 301.6 665 38.0
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.0e-79 301.6 659 35.8
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.9e-79 300.1 665 40.3
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.9e-79 300.1 621 37.7
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.0e-79 299.3 665 40.0
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 6.6e-79 298.9 669 37.4
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.6e-79 298.9 655 40.9
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.1e-78 298.1 654 38.8
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.3e-78 296.6 664 35.7
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 7.2e-78 295.4 665 36.2
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.6e-77 294.3 665 37.7
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 6.1e-77 292.4 655 37.9
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 8.0e-77 292.0 593 38.4
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.0e-76 291.6 659 37.5
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.0e-76 291.6 663 35.3
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.4e-76 291.2 661 37.8
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 3.0e-76 290.0 668 35.6
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 4.0e-76 289.7 590 38.5
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 6.8e-76 288.9 611 38.3
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.2e-75 288.1 664 35.7
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 2.0e-75 287.3 656 36.9
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 2.6e-75 287.0 662 39.6
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 3.4e-75 286.6 655 35.3
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.7e-75 285.8 668 35.3
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.3e-74 284.6 656 34.9
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 2.8e-74 283.5 662 34.7
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 2.8e-74 283.5 654 39.1
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 4.9e-74 282.7 647 37.6
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 4.9e-74 282.7 662 36.0
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 8.3e-74 282.0 656 35.2
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 1.1e-73 281.6 659 36.3
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.4e-73 280.4 666 35.4
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 2.4e-73 280.4 654 37.3
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 9.2e-73 278.5 582 39.3
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.6e-72 277.7 671 35.0
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 2.0e-72 277.3 654 35.0
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 2.7e-72 276.9 655 37.9
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 3.5e-72 276.6 646 35.9
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 3.5e-72 276.6 700 34.0
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 4.5e-72 276.2 706 33.7
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.7e-71 274.2 661 35.4
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 1.7e-71 274.2 657 33.9
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 2.3e-71 273.9 576 38.4
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 2.9e-71 273.5 656 34.6
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.9e-71 273.5 600 38.0
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 2.9e-71 273.5 606 37.1
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 6.6e-71 272.3 559 38.3
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 8.6e-71 271.9 660 35.8
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.5e-70 271.2 663 35.3
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.5e-70 271.2 660 36.5
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.9e-70 270.8 670 36.4
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 1.2e-69 268.1 578 37.0
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 2.8e-69 266.9 626 36.1
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 2.8e-69 266.9 632 35.6
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.7e-69 266.2 659 36.1
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 8.0e-69 265.4 673 33.9
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 5.2e-68 262.7 630 36.3
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 5.2e-68 262.7 656 33.8
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 6.8e-68 262.3 681 34.5
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 8.9e-68 261.9 657 36.4
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 8.9e-68 261.9 660 36.2
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-67 261.5 656 36.1
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.5e-67 261.2 657 36.4
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.6e-67 260.4 650 36.2
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 2.6e-67 260.4 650 33.5
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 7.5e-67 258.8 632 35.0
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.7e-66 257.7 658 34.5
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 2.9e-66 256.9 655 34.7
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 6.4e-66 255.8 630 34.1
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-65 255.0 661 33.6
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 7.0e-65 252.3 610 34.8
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 4.6e-64 249.6 637 34.2
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.8e-64 248.8 660 35.6
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 4.3e-62 243.0 669 32.7
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 2.8e-61 240.4 547 36.0
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 3.6e-61 240.0 691 34.2
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 6.2e-61 239.2 661 33.0
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 1.8e-60 237.7 644 32.5
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 3.1e-60 236.9 679 30.9
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 3.1e-60 236.9 690 32.5
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 5.2e-60 236.1 581 34.9
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 7.5e-59 232.3 668 32.0
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.9e-58 229.6 661 33.4
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 6.4e-58 229.2 659 34.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-57 228.4 657 34.2
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.1e-57 228.4 657 34.2
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-56 224.9 657 34.6
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 1.6e-56 224.6 575 36.9
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 7.8e-56 222.2 688 31.4
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 5.1e-55 219.5 635 33.7
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 6.6e-55 219.2 650 30.8
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.1e-54 218.4 644 32.8
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 5.6e-54 216.1 197 66.0
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.2e-53 214.9 616 31.0
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 2.1e-53 214.2 667 30.6
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 5.2e-52 209.5 597 31.7
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 2.2e-50 204.1 659 30.3
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.3e-47 194.1 567 32.3
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 2.5e-46 190.7 690 30.9
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 4.3e-46 189.9 649 32.2
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 5.2e-44 183.0 178 59.0
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 9.6e-38 162.2 148 63.5
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 6.2e-37 159.5 344 40.1
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 3.1e-36 157.1 201 47.8
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 3.1e-36 157.1 201 47.8
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.0e-35 154.5 326 42.0
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 3.8e-34 150.2 278 43.5
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.2e-32 145.2 311 39.9
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 2.5e-30 137.5 104 76.0
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 3.3e-30 137.1 104 76.0
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.8e-29 134.0 751 25.8
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 1.1e-28 132.1 306 39.2
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 3.1e-28 130.6 107 68.2
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 9.9e-27 125.6 147 52.4
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.9e-26 124.0 732 24.9
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.5e-22 111.7 420 29.5
BcaC03g14392 Brassica carinata HOM05D003640 ORTHO05D004439 5.6e-22 109.8 111 57.7
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 1.6e-21 108.2 197 43.7
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.8e-20 104.8 127 49.6
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 8.2e-13 79.3 70 65.7
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 1.4e-12 78.6 222 36.5
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 4.1e-12 77.0 52 73.1
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 5.8e-11 73.2 558 25.4
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 1.0e-10 72.4 44 79.5
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 6.5e-10 69.7 75 53.3
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 9.3e-09 65.9 33 93.9
BolC9t57240H Brassica oleracea HOM05D003640 ORTHO05D106724 7.4e-06 56.2 35 77.1
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 7.4e-06 56.2 126 35.7


User provided reference genes

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