Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 5.3e-140 501.1 276 100.0
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 2.3e-114 416.0 276 82.6
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 1.5e-113 413.3 276 82.2
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 3.3e-113 412.1 276 81.5
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 1.2e-110 403.7 275 81.5
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 8.0e-104 380.9 251 82.1
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 1.4e-103 380.2 281 76.5
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 8.9e-103 377.5 284 75.4
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 2.6e-102 375.9 279 76.0
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 4.1e-100 368.6 283 74.2
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 1.2e-96 357.1 282 72.0
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 3.6e-96 355.5 282 72.0
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 8.1e-96 354.4 282 72.0
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 8.9e-95 350.9 274 71.5
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 2.0e-94 349.7 275 73.8
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 2.0e-94 349.7 275 73.8
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 2.0e-94 349.7 275 73.8
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 4.1e-92 342.0 275 72.7
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 4.6e-91 338.6 275 72.4
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 1.4e-87 327.0 281 64.8
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 1.5e-70 270.4 279 53.8
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 2.6e-70 269.6 282 53.5
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 9.9e-70 267.7 288 53.5
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 2.2e-69 266.5 279 53.0
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 1.9e-68 263.5 279 52.3
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 4.2e-68 262.3 287 53.3
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 2.1e-67 260.0 282 52.8
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 2.7e-67 259.6 290 53.1
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 3.5e-67 259.2 281 52.3
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 1.0e-66 257.7 280 52.1
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 2.3e-66 256.5 285 51.2
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 3.0e-66 256.1 278 52.5
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 3.9e-66 255.8 287 51.2
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 5.1e-66 255.4 278 52.5
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 8.7e-66 254.6 278 52.2
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.1e-65 254.2 288 50.7
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 7.4e-65 251.5 277 51.3
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 9.6e-65 251.1 292 51.7
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 9.6e-65 251.1 292 51.7
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 2.1e-64 250.0 281 51.2
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 2.8e-64 249.6 295 53.2
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 3.7e-64 249.2 288 51.7
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.1e-63 247.7 294 49.7
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 1.4e-63 247.3 286 49.3
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 2.4e-63 246.5 284 52.5
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 2.4e-63 246.5 284 52.8
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 4.0e-63 245.7 275 49.8
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 4.0e-63 245.7 283 49.8
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 6.9e-63 245.0 292 49.3
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 9.0e-63 244.6 285 48.8
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 9.0e-63 244.6 278 52.5
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 1.2e-62 244.2 277 52.3
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.6e-62 243.0 297 49.2
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 2.6e-62 243.0 290 50.7
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 3.4e-62 242.7 279 50.2
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 3.4e-62 242.7 285 49.5
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.7e-61 240.4 288 48.6
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 2.2e-61 240.0 290 47.9
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 4.9e-61 238.8 321 46.7
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 8.4e-61 238.0 307 47.9
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 1.4e-60 237.3 288 50.0
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 1.4e-60 237.3 284 48.6
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 3.2e-60 236.1 289 49.5
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 3.2e-60 236.1 290 47.9
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 3.2e-60 236.1 282 49.6
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 4.2e-60 235.7 283 52.7
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 5.5e-60 235.3 287 50.2
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 5.5e-60 235.3 282 50.4
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 5.5e-60 235.3 282 49.6
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 7.1e-60 235.0 285 47.7
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 1.2e-59 234.2 353 42.8
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 2.1e-59 233.4 289 50.9
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 3.5e-59 232.6 293 47.8
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 3.5e-59 232.6 284 47.5
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 6.0e-59 231.9 247 52.6
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 1.3e-58 230.7 289 51.6
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 1.3e-58 230.7 284 47.2
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 1.3e-58 230.7 275 49.8
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 1.8e-58 230.3 279 48.7
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 1.8e-58 230.3 280 47.5
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 2.3e-58 229.9 281 48.4
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 1.9e-57 226.9 279 48.7
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 2.5e-57 226.5 288 47.2
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 3.3e-57 226.1 285 47.7
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 5.6e-57 225.3 280 47.9
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 7.4e-57 224.9 293 47.1
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 9.6e-57 224.6 295 45.8
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 1.6e-56 223.8 284 45.4
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 3.7e-56 222.6 287 47.4
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 8.2e-56 221.5 274 50.0
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 2.4e-55 219.9 300 45.3
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 2.4e-55 219.9 275 46.9
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 4.0e-55 219.2 279 50.2
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 5.3e-55 218.8 281 47.3
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 6.9e-55 218.4 280 47.9
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 1.5e-54 217.2 281 47.0
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 5.8e-54 215.3 328 40.9
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 7.6e-54 214.9 275 46.5
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 2.9e-53 213.0 279 49.8
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 8.4e-53 211.5 326 42.0
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 1.9e-52 210.3 289 42.6
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 1.2e-51 207.6 290 43.8
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 4.6e-51 205.7 289 43.6
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.3e-50 204.1 279 44.8
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 1.3e-50 204.1 277 43.7
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 3.0e-50 203.0 296 43.9
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 3.0e-50 203.0 287 42.9
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 8.7e-50 201.4 283 44.5
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.1e-49 201.1 283 49.1
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 5.7e-49 198.7 287 42.5
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 5.7e-49 198.7 281 43.1
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 2.8e-48 196.4 279 41.6
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 2.6e-46 189.9 281 42.3
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 5.9e-46 188.7 299 42.5
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 5.9e-46 188.7 148 70.3
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 5.5e-44 182.2 192 53.6
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.8e-42 177.2 183 50.8
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 3.3e-41 172.9 471 30.8
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 4.8e-40 169.1 280 41.4
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 4.1e-39 166.0 228 42.1
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 1.3e-37 161.0 502 28.9
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 7.2e-36 155.2 280 41.1
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 9.4e-36 154.8 280 37.9
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 3.6e-35 152.9 283 39.6
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 2.3e-34 150.2 166 48.2
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 3.9e-34 149.4 194 44.3
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 3.9e-34 149.4 140 58.6
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 1.5e-33 147.5 140 57.9
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 1.8e-31 140.6 147 55.1
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 4.1e-31 139.4 274 36.5
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 5.9e-30 135.6 273 35.9
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 7.7e-30 135.2 175 44.6
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 1.7e-29 134.0 124 59.7
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 5.0e-29 132.5 176 43.2
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 2.1e-27 127.1 278 31.7
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 8.8e-26 121.7 148 43.2
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 2.4e-23 113.6 98 58.2
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 7.2e-20 102.1 275 30.5
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 1.2e-19 101.3 274 29.9
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 2.1e-19 100.5 106 52.8
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 1.8e-18 97.4 174 41.4
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 2.6e-17 93.6 109 49.5
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 3.1e-15 86.7 174 36.2
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 5.5e-12 75.9 155 34.2
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.7e-11 73.6 155 34.2
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 2.7e-11 73.6 99 44.4
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 4.7e-11 72.8 160 36.2
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 6.1e-11 72.4 164 33.5
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.0e-10 69.7 183 29.0
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.5e-09 67.8 90 43.3
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.4e-09 66.6 157 33.1
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.8e-08 63.5 157 31.8
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.8e-08 62.8 108 36.1
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.8e-08 62.8 159 32.1
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 6.3e-08 62.4 74 41.9
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 1.4e-07 61.2 70 47.1
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.1e-07 60.1 159 30.8
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.1e-07 60.1 70 42.9
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 5.4e-07 59.3 157 28.7
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 7.0e-07 58.9 99 36.4
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.6e-06 57.8 156 32.7
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 2.0e-06 57.4 157 32.5
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 4.5e-06 56.2 159 31.4
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 4.5e-06 56.2 124 33.1
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 4.5e-06 56.2 293 22.9


User provided reference genes

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