Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04222 Brassica carinata HOM05D002932 ORTHO05D003208 1.3e-128 463.0 231 100.0
BcaC01g06213 Brassica carinata HOM05D002932 ORTHO05D003208 2.3e-112 409.1 233 89.3
A03p15470 Brassica napus HOM05D002932 ORTHO05D003208 1.1e-111 406.8 232 87.9
BraA03t10842Z Brassica rapa HOM05D002932 ORTHO05D003208 1.1e-111 406.8 232 87.9
C03p18060 Brassica napus HOM05D002932 ORTHO05D003208 2.0e-111 406.0 232 88.8
BolC3t14211H Brassica oleracea HOM05D002932 ORTHO05D003208 2.0e-111 406.0 232 88.8
Sp6g15070 Schrenkiella parvula HOM05D002932 ORTHO05D003208 3.3e-103 378.6 236 82.2
A10p10380 Brassica napus HOM05D002932 ORTHO05D003208 5.9e-100 367.9 230 82.2
C09p42630 Brassica napus HOM05D002932 ORTHO05D003208 5.9e-100 367.9 230 82.2
BolC9t57139H Brassica oleracea HOM05D002932 ORTHO05D003208 5.9e-100 367.9 230 82.2
BraA10t43121Z Brassica rapa HOM05D002932 ORTHO05D003208 5.9e-100 367.9 230 82.2
Thhalv10014576m.g Eutrema salsugineum HOM05D002932 ORTHO05D003208 2.1e-97 359.4 234 81.2
BcaC04g20524 Brassica carinata HOM05D002932 ORTHO05D003208 1.0e-96 357.1 230 81.3
BcaB08g35654 Brassica carinata HOM05D002932 ORTHO05D003208 3.3e-95 352.1 236 78.4
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 1.1e-93 347.1 237 76.8
BolC2t08047H Brassica oleracea HOM05D002932 ORTHO05D003208 1.4e-93 346.7 231 78.8
BcaB05g21990 Brassica carinata HOM05D002932 ORTHO05D003208 2.4e-93 345.9 236 79.7
A02p11520 Brassica napus HOM05D002932 ORTHO05D003208 4.1e-93 345.1 231 78.8
CARHR265860 Cardamine hirsuta HOM05D002932 ORTHO05D003208 3.5e-92 342.0 242 75.6
BraA02t06216Z Brassica rapa HOM05D002932 ORTHO05D003208 7.7e-92 340.9 224 79.9
C02p19170 Brassica napus HOM05D002932 ORTHO05D003208 1.3e-91 340.1 222 80.2
BcaC03g14485 Brassica carinata HOM05D002932 ORTHO05D003208 2.2e-91 339.3 222 80.2
AL8G27370 Arabidopsis lyrata HOM05D002932 ORTHO05D003208 8.5e-91 337.4 235 74.9
Carub.0008s1309 Capsella rubella HOM05D002932 ORTHO05D003208 9.2e-77 290.8 237 67.9
THA.LOC104811937 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 5.2e-56 221.9 244 54.1
THA.LOC104825123 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 4.6e-52 208.8 244 54.9
Aa31LG3G9150 Aethionema arabicum HOM05D002932 ORTHO05D003208 4.7e-49 198.7 253 53.0
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 1.1e-37 161.0 233 47.6
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 5.4e-37 158.7 237 48.5
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 7.1e-37 158.3 231 47.6
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 2.7e-36 156.4 235 47.2
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 2.7e-36 156.4 245 45.3
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 4.6e-36 155.6 232 47.0
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 7.8e-36 154.8 232 47.8
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.3e-35 154.1 229 44.5
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 1.7e-35 153.7 229 46.7
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 6.6e-35 151.8 250 44.4
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 6.6e-35 151.8 250 44.4
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 6.6e-35 151.8 225 43.6
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 6.6e-35 151.8 224 45.5
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 8.7e-35 151.4 250 44.4
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 8.7e-35 151.4 250 44.4
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 1.1e-34 151.0 236 42.8
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 5.6e-34 148.7 241 44.0
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 5.6e-34 148.7 232 45.7
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 7.3e-34 148.3 240 42.1
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 9.6e-34 147.9 227 44.5
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 1.6e-33 147.1 229 45.9
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 1.6e-33 147.1 240 45.4
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 2.8e-33 146.4 234 47.4
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 4.8e-33 145.6 239 42.7
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 4.8e-33 145.6 234 47.0
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 4.8e-33 145.6 231 43.3
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 8.1e-33 144.8 242 43.4
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 1.1e-32 144.4 243 43.2
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 1.4e-32 144.1 234 45.7
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.4e-32 144.1 248 42.7
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 1.4e-32 144.1 233 41.6
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 1.4e-32 144.1 231 45.5
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 2.4e-32 143.3 227 43.6
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 3.1e-32 142.9 242 43.0
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 4.0e-32 142.5 230 45.2
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 4.0e-32 142.5 239 43.9
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 5.3e-32 142.1 239 45.2
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 5.3e-32 142.1 239 45.2
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 9.0e-32 141.4 232 43.5
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 9.0e-32 141.4 229 41.5
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 1.2e-31 141.0 253 38.3
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 1.2e-31 141.0 235 45.5
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.2e-31 141.0 230 44.8
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 1.5e-31 140.6 235 45.1
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 1.5e-31 140.6 231 43.3
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 4.5e-31 139.0 236 44.5
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 5.8e-31 138.7 252 38.5
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 5.8e-31 138.7 232 45.3
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 7.6e-31 138.3 230 43.5
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 1.3e-30 137.5 229 45.0
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 1.7e-30 137.1 229 43.2
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 2.9e-30 136.3 251 42.6
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 4.9e-30 135.6 244 40.2
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 6.4e-30 135.2 239 43.1
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 6.4e-30 135.2 239 43.1
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 6.4e-30 135.2 240 41.7
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 6.4e-30 135.2 234 43.2
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 1.1e-29 134.4 230 42.6
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 1.1e-29 134.4 230 45.2
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 1.9e-29 133.7 230 41.7
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 1.9e-29 133.7 231 42.4
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 2.4e-29 133.3 240 41.2
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 4.2e-29 132.5 244 41.0
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 5.4e-29 132.1 227 41.0
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 1.6e-28 130.6 247 38.9
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 4.6e-28 129.0 238 42.4
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 4.6e-28 129.0 237 41.4
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 4.6e-28 129.0 230 39.1
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 7.9e-28 128.3 223 39.5
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 7.9e-28 128.3 225 41.8
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 1.0e-27 127.9 240 40.0
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 1.3e-27 127.5 242 43.0
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 2.3e-27 126.7 239 41.0
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 5.1e-27 125.6 228 41.2
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 6.7e-27 125.2 230 40.9
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 8.7e-27 124.8 209 42.1
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 1.1e-26 124.4 226 39.8
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.5e-26 124.0 231 39.8
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 2.5e-26 123.2 227 44.5
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 4.3e-26 122.5 232 38.8
Migut.F00261 Erythranthe guttata HOM05D002932 ORTHO05D003208 5.6e-26 122.1 252 40.1
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 7.4e-26 121.7 232 37.9
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 1.3e-25 120.9 237 38.0
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 4.8e-25 119.0 222 41.4
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 4.8e-25 119.0 232 40.1
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 6.2e-25 118.6 238 37.8
ClCG01G000790 Citrullus lanatus HOM05D002932 ORTHO05D003208 8.1e-25 118.2 227 37.9
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 8.1e-25 118.2 226 39.4
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 5.3e-24 115.5 232 37.9
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 5.3e-24 115.5 231 39.8
Sed0018025 Sechium edule HOM05D002932 ORTHO05D003208 6.9e-24 115.2 230 35.2
CsaV3_5G000930 Cucumis sativus L. HOM05D002932 ORTHO05D003208 2.0e-23 113.6 231 39.0
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 2.0e-23 113.6 230 36.1
MELO3C005851.2 Cucumis melo HOM05D002932 ORTHO05D003208 5.8e-23 112.1 225 36.4
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 5.8e-23 112.1 238 37.4
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 7.6e-23 111.7 227 35.7
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 1.7e-22 110.5 231 40.3
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 1.9e-21 107.1 246 38.2
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.9e-21 107.1 229 37.1
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 5.5e-21 105.5 228 36.0
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 2.1e-20 103.6 221 38.0
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 3.5e-20 102.8 232 36.6
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 6.0e-20 102.1 227 36.6
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 7.9e-20 101.7 239 36.4
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 2.3e-19 100.1 227 36.1
HanXRQChr14g0462641 Helianthus annuus HOM05D002932 ORTHO05D003208 3.0e-19 99.8 214 35.0
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 8.7e-19 98.2 227 34.8
Medtr6g034050 Medicago truncatula HOM05D002932 ORTHO05D003208 1.5e-18 97.4 227 36.6
Sc19g0001040 Simmondsia chinensis HOM05D002932 ORTHO05D003208 2.5e-18 96.7 225 37.3
PGR142G0585 Punica granatum HOM05D002932 ORTHO05D003208 4.3e-18 95.9 234 37.2
Atru.ctg97_1.61 Acer truncatum HOM05D002932 ORTHO05D003208 2.8e-17 93.2 217 37.3
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.7e-17 92.8 155 40.6
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 3.7e-17 92.8 172 41.3
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 6.2e-17 92.0 225 34.7
HanXRQChr07g0207101 Helianthus annuus HOM05D002932 ORTHO05D003208 1.4e-16 90.9 214 33.2
Gorai.007G013900 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.2e-15 87.8 196 36.2
Peaxi162Scf00904g00468 Petunia axillaris HOM05D002932 ORTHO05D003208 1.5e-15 87.4 207 37.2
Nitab4.5_0009102g0020 Nicotiana tabacum HOM05D002932 ORTHO05D003208 5.8e-15 85.5 210 36.2
Lsat_1_v5_gn_2_133581 Lactuca sativa HOM05D002932 ORTHO05D003208 1.0e-14 84.7 192 34.9
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 2.9e-14 83.2 235 32.3
Peaxi162Scf00618g00627 Petunia axillaris HOM05D002932 ORTHO05D003208 8.4e-14 81.6 208 34.6
Lsat_1_v5_gn_8_6240 Lactuca sativa HOM05D002932 ORTHO05D003208 1.9e-13 80.5 253 32.8
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 4.2e-13 79.3 255 30.2
CAN.G204.10 Capsicum annuum HOM05D002932 ORTHO05D003208 9.3e-13 78.2 219 30.6
MBI07_g44813_MAGBIO Magnolia biondii HOM05D002932 ORTHO05D003208 1.6e-12 77.4 239 31.4
CSS0001843 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 4.6e-12 75.9 155 38.7
Gohir.A08G127400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 3.3e-10 69.7 226 28.8
MSTRG.27064 Avicennia marina HOM05D002932 ORTHO05D003208 4.3e-10 69.3 150 33.3
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 7.4e-10 68.6 232 30.2
Gohir.D08G148800 Gossypium hirsutum HOM05D002932 ORTHO05D003208 9.7e-10 68.2 226 28.3
Gorai.004G154500 Gossypium raimondii HOM05D002932 ORTHO05D003208 9.7e-10 68.2 226 28.3
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 2.2e-09 67.0 219 32.0
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 2.8e-09 66.6 289 28.7
Duzib138G0190 Durio zibethinus HOM05D002932 ORTHO05D003208 3.7e-09 66.2 235 30.6
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 2.4e-08 63.5 228 29.8
CSS0002659 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 3.1e-08 63.2 249 30.1
Duzib133G1077 Durio zibethinus HOM05D002932 ORTHO05D003208 3.1e-08 63.2 241 27.0
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 3.1e-08 63.2 229 28.8
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 5.3e-08 62.4 238 30.7
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 5.3e-08 62.4 236 29.2
vmacro10092 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 5.3e-08 62.4 117 36.8
HanXRQChr16g0523761 Helianthus annuus HOM05D002932 ORTHO05D003208 1.2e-07 61.2 233 29.2
Aqoxy1G02826 Aquilegia oxysepala HOM05D002932 ORTHO05D003208 1.5e-07 60.8 245 29.0
PSO384G0628 Papaver somniferum HOM05D002932 ORTHO05D003208 1.5e-07 60.8 278 27.7
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 1.5e-07 60.8 228 30.3
Actinidia20171 Actinidia chinensis HOM05D002932 ORTHO05D003208 2.0e-07 60.5 262 27.1
Dinv32532 Davidia involucrata HOM05D002932 ORTHO05D003208 2.6e-07 60.1 274 25.9
Peaxi162Scf00020g00174 Petunia axillaris HOM05D002932 ORTHO05D003208 2.6e-07 60.1 277 26.7
MSTRG.4831 Avicennia marina HOM05D002932 ORTHO05D003208 4.5e-07 59.3 271 29.2
CAN.G78.138 Capsicum annuum HOM05D002932 ORTHO05D003208 4.5e-07 59.3 291 27.1
PSO135G1046 Papaver somniferum HOM05D002932 ORTHO05D003208 4.5e-07 59.3 274 26.3
CSS0013096 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 5.9e-07 58.9 256 30.1
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 5.9e-07 58.9 237 28.3
Thecc.01G350800 Theobroma cacao HOM05D002932 ORTHO05D003208 1.0e-06 58.2 158 31.0
CiPaw.02G036300 Carya illinoinensis HOM05D002932 ORTHO05D003208 1.3e-06 57.8 244 25.8
Solyc01g095240.3 Solanum lycopersicum HOM05D002932 ORTHO05D003208 1.3e-06 57.8 275 25.8
Medtr7g039720 Medicago truncatula HOM05D002932 ORTHO05D003208 2.2e-06 57.0 230 25.7
Nitab4.5_0009475g0010 Nicotiana tabacum HOM05D002932 ORTHO05D003208 2.9e-06 56.6 276 27.2
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 3.8e-06 56.2 221 28.1
Medtr5g039840 Medicago truncatula HOM05D002932 ORTHO05D003208 6.5e-06 55.5 227 26.4
Nitab4.5_0000305g0360 Nicotiana tabacum HOM05D002932 ORTHO05D003208 6.5e-06 55.5 278 26.6


User provided reference genes

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