Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 7.3e-95 350.5 172 100.0
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 9.8e-92 340.1 172 98.3
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 9.8e-92 340.1 172 98.3
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 2.2e-91 339.0 172 97.7
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 2.2e-91 339.0 172 97.7
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 4.9e-91 337.8 172 97.7
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 7.0e-90 334.0 172 95.9
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.6e-89 332.8 172 95.3
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 5.9e-89 330.9 172 95.3
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 5.9e-89 330.9 172 95.3
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.0e-88 330.1 172 93.6
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 1.7e-88 329.3 172 94.2
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.7e-88 329.3 172 94.8
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 3.9e-88 328.2 172 93.6
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 8.6e-88 327.0 172 92.4
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 2.5e-87 325.5 172 93.6
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 5.6e-87 324.3 172 93.0
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 1.2e-86 323.2 172 93.0
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 1.6e-86 322.8 172 90.7
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 1.6e-86 322.8 172 90.7
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 3.1e-85 318.5 172 91.3
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.4e-84 315.1 172 89.0
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 2.2e-83 312.4 172 90.7
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 2.2e-83 312.4 172 90.7
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 6.4e-83 310.8 172 87.8
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.3e-80 303.1 172 85.5
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.3e-79 298.5 172 86.6
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 4.3e-79 298.1 169 87.6
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 9.5e-79 297.0 172 83.1
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.1e-78 295.8 172 84.3
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-78 295.4 170 84.1
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 2.8e-78 295.4 172 83.7
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 3.6e-78 295.0 172 83.1
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 4.7e-78 294.7 170 84.1
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.7e-78 294.7 170 84.1
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.7e-78 294.7 170 84.1
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.2e-78 294.3 170 83.5
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.2e-78 294.3 170 83.5
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-77 293.5 170 84.1
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.8e-77 292.7 170 83.5
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 2.3e-77 292.4 168 84.5
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 2.3e-77 292.4 170 84.1
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.0e-77 291.6 172 82.6
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 4.0e-77 291.6 170 82.9
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 6.8e-77 290.8 164 84.8
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 6.8e-77 290.8 172 83.7
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 8.9e-77 290.4 172 81.4
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.2e-76 290.0 172 82.0
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 4.4e-76 288.1 172 82.6
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 5.8e-76 287.7 172 82.0
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 7.5e-76 287.3 170 81.8
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 7.5e-76 287.3 174 82.8
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 7.5e-76 287.3 172 82.6
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 9.8e-76 287.0 165 81.2
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.3e-75 286.6 164 84.1
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 2.9e-75 285.4 171 80.7
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 6.4e-75 284.3 172 80.2
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.9e-74 282.7 172 79.7
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.9e-74 282.7 172 79.7
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 1.9e-74 282.7 172 82.6
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 3.2e-74 282.0 173 80.9
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.2e-73 280.0 151 88.1
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 1.6e-73 279.6 158 83.5
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 1.6e-73 279.6 158 83.5
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 6.0e-73 277.7 166 80.1
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.3e-72 276.6 172 77.9
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.7e-72 276.2 172 79.1
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.7e-72 276.2 178 77.0
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.7e-72 276.2 151 84.8
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 2.3e-72 275.8 165 80.0
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 3.9e-72 275.0 172 80.2
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 6.6e-72 274.2 167 79.6
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 6.6e-72 274.2 175 79.4
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.1e-71 273.5 151 84.1
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 1.1e-71 273.5 168 76.8
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 4.3e-71 271.6 172 78.5
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 5.6e-71 271.2 148 86.5
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 5.6e-71 271.2 168 76.2
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 7.3e-71 270.8 165 78.2
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 7.3e-71 270.8 176 75.6
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 9.5e-71 270.4 173 76.9
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 9.5e-71 270.4 166 77.7
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.2e-70 270.0 172 76.7
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.6e-70 269.6 151 83.4
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 2.1e-70 269.2 167 79.0
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 2.8e-70 268.9 149 85.9
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 3.6e-70 268.5 180 74.4
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 4.7e-70 268.1 167 79.0
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 4.7e-70 268.1 168 78.6
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 6.2e-70 267.7 165 78.8
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 6.2e-70 267.7 172 80.2
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 6.2e-70 267.7 156 81.4
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 8.1e-70 267.3 152 81.6
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 8.1e-70 267.3 170 76.5
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 8.1e-70 267.3 149 84.6
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 1.1e-69 266.9 165 78.8
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.8e-69 266.2 151 81.5
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.8e-69 266.2 166 77.1
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.8e-69 266.2 177 72.9
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.1e-69 265.4 172 76.7
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 5.2e-69 264.6 151 82.1
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 5.2e-69 264.6 173 74.0
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 6.8e-69 264.2 174 75.3
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 6.8e-69 264.2 172 73.8
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 8.9e-69 263.8 154 79.9
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 8.9e-69 263.8 170 75.3
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.5e-68 263.1 162 78.4
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 2.0e-68 262.7 168 75.6
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 3.4e-68 261.9 171 74.3
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 5.8e-68 261.2 155 80.6
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 5.8e-68 261.2 180 73.3
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 7.6e-68 260.8 171 71.9
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 9.9e-68 260.4 151 82.8
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.3e-67 260.0 162 75.3
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 1.3e-67 260.0 161 78.9
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 1.7e-67 259.6 180 71.7
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 1.7e-67 259.6 180 71.7
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 1.7e-67 259.6 151 80.8
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 2.9e-67 258.8 151 80.1
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.9e-67 258.8 168 77.4
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 2.9e-67 258.8 168 77.4
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 6.4e-67 257.7 175 74.3
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 8.4e-67 257.3 153 81.0
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.1e-66 256.9 168 76.2
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.4e-66 255.8 175 73.7
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 5.4e-66 254.6 172 75.0
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 7.1e-66 254.2 153 77.1
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 7.1e-66 254.2 151 79.5
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.2e-65 253.4 151 78.1
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.6e-65 253.1 164 75.6
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 2.1e-65 252.7 152 78.3
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 2.1e-65 252.7 175 72.6
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 7.8e-65 250.8 155 76.1
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 5.1e-64 248.1 165 72.1
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.2e-62 243.4 207 60.4
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.8e-61 239.6 146 76.0
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 2.0e-60 236.1 139 77.7
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.0e-60 236.1 160 72.5
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 7.1e-58 227.6 126 81.7
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 7.1e-58 227.6 145 74.5
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 7.8e-57 224.2 152 70.4
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 9.6e-55 217.2 131 80.2
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 9.0e-53 210.7 142 66.9
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 3.4e-52 208.8 130 76.2
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 3.5e-49 198.7 112 82.1
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.3e-48 196.8 172 64.5
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 5.8e-44 181.4 134 65.7
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 1.9e-42 176.4 133 60.2
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 7.1e-42 174.5 166 56.6
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 2.1e-41 172.9 134 61.9
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 6.0e-41 171.4 134 60.4
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 1.3e-40 170.2 108 80.6
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 8.7e-40 167.5 155 54.8
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.5e-39 166.8 88 95.5
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 2.5e-34 149.4 86 87.2
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 3.2e-34 149.1 112 69.6
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 7.4e-31 137.9 172 50.6
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 2.8e-30 136.0 120 52.5
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 2.4e-29 132.9 70 88.6
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.2e-28 130.6 105 67.6
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.9e-26 123.2 99 60.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 4.2e-26 122.1 98 64.3
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.8e-24 116.7 171 39.2
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.9e-24 115.5 118 44.1
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 1.7e-22 110.2 71 74.6
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.2e-22 109.8 122 42.6
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.2e-22 109.8 122 42.6
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.1e-21 107.5 55 83.6
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 8.5e-19 97.8 67 70.1
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 2.6e-15 86.3 66 62.1
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 3.3e-15 85.9 96 41.7
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 3.3e-15 85.9 96 41.7
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.3e-15 85.9 55 74.5
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 3.7e-14 82.4 95 40.0
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.9e-12 75.1 42 69.0
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.7e-11 73.6 95 43.2


User provided reference genes

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