Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 8.4e-163 577.0 305 100.0
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 8.5e-123 444.1 301 81.4
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 1.2e-116 423.7 300 78.0
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 2.3e-115 419.5 300 77.7
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 1.5e-103 380.2 271 77.9
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 1.5e-103 380.2 271 77.9
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 3.7e-102 375.6 270 78.5
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 3.9e-99 365.5 311 66.9
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 3.5e-84 315.8 156 92.9
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.7e-78 297.0 280 53.6
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 3.6e-73 279.3 227 65.2
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 3.6e-73 279.3 227 65.2
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.6e-71 273.1 257 64.2
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 2.1e-65 253.4 304 45.1
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 2.4e-64 250.0 308 44.8
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 9.0e-64 248.1 180 64.4
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 9.0e-64 248.1 303 44.6
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 1.2e-63 247.7 176 65.3
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 1.2e-63 247.7 176 65.3
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.1e-61 241.1 303 44.9
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.1e-61 241.1 171 66.1
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 4.2e-61 239.2 300 46.0
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.1e-61 238.4 308 50.0
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.7e-60 236.5 321 42.1
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 6.0e-60 235.3 301 50.2
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 7.4e-58 228.4 301 42.9
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 7.4e-58 228.4 301 42.9
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 6.9e-56 221.9 176 60.2
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 4.6e-52 209.1 303 40.6
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 5.1e-51 205.7 303 41.3
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 5.1e-51 205.7 303 39.6
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 6.7e-51 205.3 314 38.2
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 2.8e-49 199.9 303 41.9
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 4.8e-49 199.1 303 41.9
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 3.8e-46 189.5 233 45.1
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 6.5e-46 188.7 306 35.3
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.9e-45 187.2 176 52.3
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 5.1e-43 179.1 356 33.1
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 5.1e-43 179.1 356 33.1
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 5.7e-42 175.6 326 31.9
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 9.7e-42 174.9 327 32.1
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 2.4e-40 170.2 356 31.7
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 2.4e-40 170.2 332 31.3
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 6.9e-40 168.7 174 47.1
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 1.2e-39 167.9 178 45.5
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 5.9e-39 165.6 326 34.0
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 5.9e-39 165.6 340 30.0
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.7e-38 164.1 173 46.8
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.2e-38 163.7 170 44.7
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 2.9e-38 163.3 192 41.7
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 2.9e-38 163.3 190 44.7
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 5.0e-38 162.5 348 31.6
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 8.5e-38 161.8 356 30.6
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 1.1e-37 161.4 174 44.8
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 1.4e-37 161.0 319 30.4
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 1.4e-37 161.0 316 30.7
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 1.4e-37 161.0 360 30.6
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 1.9e-37 160.6 362 29.8
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 3.2e-37 159.8 349 31.8
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 3.2e-37 159.8 175 45.1
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 5.5e-37 159.1 324 34.0
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 5.5e-37 159.1 172 43.6
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 5.5e-37 159.1 166 44.0
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 7.2e-37 158.7 341 32.6
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 1.2e-36 157.9 334 30.8
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.2e-36 157.9 324 33.3
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 1.2e-36 157.9 329 31.0
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 2.1e-36 157.1 324 33.6
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 2.1e-36 157.1 362 28.7
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 2.7e-36 156.8 174 43.1
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 3.6e-36 156.4 189 41.8
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 4.6e-36 156.0 361 29.4
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 7.9e-36 155.2 363 29.5
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 7.9e-36 155.2 370 28.4
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 1.0e-35 154.8 351 30.8
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.0e-35 154.8 363 28.9
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 1.4e-35 154.5 366 29.0
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 1.4e-35 154.5 189 42.9
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 1.8e-35 154.1 172 44.2
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 1.8e-35 154.1 363 28.7
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 2.3e-35 153.7 362 28.5
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 3.0e-35 153.3 190 41.6
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 3.9e-35 152.9 175 42.9
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 5.1e-35 152.5 173 42.2
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 6.7e-35 152.1 172 41.3
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 6.7e-35 152.1 274 34.7
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 2.6e-34 150.2 181 42.5
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.6e-34 150.2 324 32.1
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 2.6e-34 150.2 176 42.0
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 3.3e-34 149.8 174 40.8
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 5.7e-34 149.1 341 29.6
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 5.7e-34 149.1 362 28.5
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 9.7e-34 148.3 189 38.6
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 1.3e-33 147.9 176 44.3
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 1.7e-33 147.5 172 42.4
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 1.7e-33 147.5 180 42.8
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-33 147.5 195 39.0
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.7e-33 147.5 173 41.0
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 2.2e-33 147.1 319 28.8
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.8e-33 146.7 273 38.8
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 6.3e-33 145.6 175 41.7
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 8.2e-33 145.2 173 43.4
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 1.1e-32 144.8 342 37.4
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 1.4e-32 144.4 341 28.7
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 2.4e-32 143.7 209 36.8
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.1e-32 143.3 195 41.0
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 5.3e-32 142.5 172 40.7
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 1.2e-31 141.4 189 38.6
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 2.0e-31 140.6 191 38.2
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 2.6e-31 140.2 165 41.2
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 3.4e-31 139.8 166 40.4
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 4.5e-31 139.4 189 38.1
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 5.9e-31 139.0 346 28.6
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 7.7e-31 138.7 169 39.6
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 7.7e-31 138.7 172 40.1
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-30 137.9 172 40.7
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 1.3e-30 137.9 179 41.3
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 2.2e-30 137.1 195 36.9
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.9e-30 136.7 172 40.1
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 3.8e-30 136.3 173 38.7
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 5.0e-30 136.0 173 39.3
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 6.5e-30 135.6 183 42.6
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 6.5e-30 135.6 179 40.8
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 1.1e-29 134.8 204 36.3
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-29 134.8 192 37.5
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 3.2e-29 133.3 339 26.5
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 1.0e-27 128.3 326 30.7
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 1.8e-27 127.5 144 43.1
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 6.7e-27 125.6 257 29.6
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.5e-26 124.4 409 26.9
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 2.6e-26 123.6 176 40.3
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 9.7e-26 121.7 253 30.4
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 1.7e-25 120.9 201 35.8
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.7e-25 120.9 208 34.1
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.2e-25 120.6 432 24.1
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 3.7e-25 119.8 442 24.0
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 1.1e-24 118.2 148 39.9
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 2.4e-24 117.1 175 35.4
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 1.6e-23 114.4 287 29.6
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 1.6e-23 114.4 299 29.8
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.9e-22 110.2 179 34.1
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.1e-21 108.2 95 47.4
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.2e-20 104.8 214 30.8
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 4.7e-20 102.8 119 42.9
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 2.3e-19 100.5 181 31.5
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 2.3e-19 100.5 165 33.9
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 8.8e-19 98.6 111 43.2
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 8.8e-19 98.6 88 51.1
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 7.5e-18 95.5 180 32.8
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 1.7e-17 94.4 73 52.1
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 2.8e-17 93.6 248 26.2
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 2.8e-17 93.6 123 38.2
BolC3t14251H Brassica oleracea HOM05D003860 ORTHO05D004218 3.8e-14 83.2 43 90.7
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 1.1e-13 81.6 175 28.6
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 1.5e-13 81.3 90 40.0
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 9.4e-13 78.6 128 32.8
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 2.7e-12 77.0 105 37.1
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 3.4e-10 70.1 203 24.6
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 5.4e-08 62.8 85 36.5
C03p18540 Brassica napus HOM05D003860 ORTHO05D004218 5.9e-07 59.3 31 87.1


User provided reference genes

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