Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04090 Brassica carinata HOM05D011773 ORTHO05D013456 3.0e-69 265.0 128 100.0
C09p27980 Brassica napus HOM05D011773 ORTHO05D013456 2.8e-35 152.1 111 64.9
AL1G60020 Arabidopsis lyrata HOM05D011773 ORTHO05D013456 5.3e-34 147.9 129 58.9
Carub.0001s4092 Capsella rubella HOM05D011773 ORTHO05D013456 9.1e-34 147.1 129 58.1
CARHR042140 Cardamine hirsuta HOM05D011773 ORTHO05D013456 3.4e-33 145.2 120 57.5
AT1G51970 Arabidopsis thaliana HOM05D011773 ORTHO05D013456 1.3e-32 143.3 129 57.4
BolC9t55657H Brassica oleracea HOM05D011773 ORTHO05D013456 6.5e-32 141.0 94 70.2
AL1G60030 Arabidopsis lyrata HOM05D011773 ORTHO05D013456 1.9e-31 139.4 117 55.6
Thhalv10019518m.g Eutrema salsugineum HOM05D011773 ORTHO05D013456 9.7e-20 100.5 123 45.5
Thhalv10022043m.g Eutrema salsugineum HOM05D011773 ORTHO05D013456 2.8e-19 99.0 128 43.8
AL1G21240 Arabidopsis lyrata HOM05D011773 ORTHO05D013456 4.1e-18 95.1 131 38.9
AT1G10455 Arabidopsis thaliana HOM05D011773 ORTHO05D013456 4.1e-18 95.1 133 40.6
Thhalv10005614m.g Eutrema salsugineum HOM05D011773 ORTHO05D013456 1.9e-15 86.3 123 41.5
AT3G28853 Arabidopsis thaliana HOM05D011773 ORTHO05D013456 4.0e-13 78.6 125 32.8
Eucgr.L02104 Eucalyptus grandis HOM05D001713 ORTHO05D001669 3.5e-09 65.5 116 31.0
Eucgr.E02051 Eucalyptus grandis HOM05D001713 ORTHO05D001669 4.5e-09 65.1 114 29.8
Eucgr.E02039 Eucalyptus grandis HOM05D001713 ORTHO05D001669 5.9e-09 64.7 118 29.7
Eucgr.L01801 Eucalyptus grandis HOM05D001713 ORTHO05D001669 1.3e-08 63.5 114 32.5
Prupe.5G100300 Prunus persica HOM05D001713 ORTHO05D001669 1.3e-08 63.5 107 31.8
Eucgr.E01933 Eucalyptus grandis HOM05D001713 ORTHO05D001669 2.9e-08 62.4 128 31.2
QL08p058986 Quercus lobata HOM05D001713 ORTHO05D001669 2.9e-08 62.4 120 30.0
Cpa.g.sc28.53 Carica papaya HOM05D001713 ORTHO05D001669 3.8e-08 62.0 111 27.0
Eucgr.E02046 Eucalyptus grandis HOM05D001713 ORTHO05D001669 3.8e-08 62.0 116 30.2
Eucgr.E02053 Eucalyptus grandis HOM05D001713 ORTHO05D001669 5.0e-08 61.6 116 30.2
Eucgr.E02060 Eucalyptus grandis HOM05D001713 ORTHO05D001669 5.0e-08 61.6 114 29.8
Eucgr.L01802 Eucalyptus grandis HOM05D001713 ORTHO05D001669 5.0e-08 61.6 114 28.9
Eucgr.E02044 Eucalyptus grandis HOM05D001713 ORTHO05D001669 6.5e-08 61.2 114 28.9
Eucgr.E01947 Eucalyptus grandis HOM05D001713 ORTHO05D001669 8.5e-08 60.8 108 31.5
Eucgr.E02078 Eucalyptus grandis HOM05D001713 ORTHO05D001669 1.9e-07 59.7 108 31.5
Eucgr.E02048 Eucalyptus grandis HOM05D001713 ORTHO05D001669 2.5e-07 59.3 108 27.8
Eucgr.E02050 Eucalyptus grandis HOM05D001713 ORTHO05D001669 2.5e-07 59.3 114 28.9
Eucgr.L03694 Eucalyptus grandis HOM05D001713 ORTHO05D001669 2.5e-07 59.3 114 28.9
Eucgr.E02047 Eucalyptus grandis HOM05D001713 ORTHO05D001669 3.2e-07 58.9 114 28.9
Eucgr.E02057 Eucalyptus grandis HOM05D001713 ORTHO05D001669 4.2e-07 58.5 108 28.7
COL.COLO4_24578 Corchorus olitorius HOM05D001713 ORTHO05D001669 5.5e-07 58.2 111 31.5
Dinv38941 Davidia involucrata HOM05D001713 ORTHO05D001669 5.5e-07 58.2 117 26.5
RcHm_v2.0_Chr1g0351961 Rosa chinensis HOM05D001713 ORTHO05D001669 5.5e-07 58.2 109 29.4
BcaC01g05828 Brassica carinata HOM05D001713 ORTHO05D001669 7.2e-07 57.8 107 29.0
TAR374G0415 Trochodendron aralioides HOM05D001713 ORTHO05D001669 7.2e-07 57.8 108 28.7
Lj3g0017442 Lotus japonicus HOM05D001713 ORTHO05D001669 1.2e-06 57.0 110 32.7
Psat5g198800 Pisum sativum HOM05D001713 ORTHO05D001669 1.2e-06 57.0 113 31.0
Psat5g201080 Pisum sativum HOM05D001713 ORTHO05D001669 1.2e-06 57.0 113 30.1
Nn4g26398 Nelumbo nucifera HOM05D001713 ORTHO05D001669 1.6e-06 56.6 105 29.5
Psat0s4104g0040 Pisum sativum HOM05D001713 ORTHO05D001669 1.6e-06 56.6 115 30.4
Psat6g047560 Pisum sativum HOM05D001713 ORTHO05D001669 1.6e-06 56.6 115 30.4
Haze_09851 Corylus avellana HOM05D001713 ORTHO05D001669 2.7e-06 55.8 110 30.9
Eucgr.E01937 Eucalyptus grandis HOM05D001713 ORTHO05D001669 2.7e-06 55.8 108 29.6
Nn4g26403 Nelumbo nucifera HOM05D001713 ORTHO05D001669 2.7e-06 55.8 104 26.0
Lj6g0015270 Lotus japonicus HOM05D001713 ORTHO05D001669 3.6e-06 55.5 116 30.2
Manes.18G110100 Manihot esculenta HOM05D001713 ORTHO05D001669 3.6e-06 55.5 108 30.6
Thhalv10019801m.g Eutrema salsugineum HOM05D011773 ORTHO05D013456 4.7e-06 55.1 70 42.9
Psat5g200800 Pisum sativum HOM05D001713 ORTHO05D001669 4.7e-06 55.1 113 28.3
Sabra04G0080300 Salix brachista HOM05D001713 ORTHO05D001669 4.7e-06 55.1 120 27.5
Sabra04G0080400 Salix brachista HOM05D001713 ORTHO05D001669 4.7e-06 55.1 120 27.5
Eucgr.E01934 Eucalyptus grandis HOM05D001713 ORTHO05D001669 6.1e-06 54.7 107 30.8
Eucgr.E01939 Eucalyptus grandis HOM05D001713 ORTHO05D001669 6.1e-06 54.7 107 30.8
Gohir.A09G192201 Gossypium hirsutum HOM05D001713 ORTHO05D001669 6.1e-06 54.7 110 32.7
Manes.18G142300 Manihot esculenta HOM05D001713 ORTHO05D001669 6.1e-06 54.7 108 28.7
Manes.18G142350 Manihot esculenta HOM05D001713 ORTHO05D001669 6.1e-06 54.7 108 28.7
Nitab4.5_0000390g0070 Nicotiana tabacum HOM05D001713 ORTHO05D001669 6.1e-06 54.7 116 25.9
Sp4g16060 Schrenkiella parvula HOM05D001713 ORTHO05D001669 6.1e-06 54.7 113 31.0
AT1G78640 Arabidopsis thaliana HOM05D001713 ORTHO05D001669 8.0e-06 54.3 114 28.9
Nitab4.5_0001033g0070 Nicotiana tabacum HOM05D001713 ORTHO05D001669 8.0e-06 54.3 108 27.8
Thecc.01G009000 Theobroma cacao HOM05D001713 ORTHO05D001669 8.0e-06 54.3 109 32.1


User provided reference genes

Program Settings