Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04050 Brassica carinata HOM05D006190 ORTHO05D008260 6.6e-48 193.7 100 100.0
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 3.1e-29 131.7 64 100.0
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 9.3e-18 93.6 71 67.6
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 1.6e-17 92.8 71 66.2
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 4.6e-17 91.3 71 67.6
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 7.9e-17 90.5 71 64.8
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 1.0e-16 90.1 58 77.6
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 3.0e-16 88.6 58 75.9
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 3.9e-16 88.2 71 63.4
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 5.1e-16 87.8 71 64.8
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 6.7e-16 87.4 58 74.1
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 6.7e-16 87.4 71 63.4
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 5.6e-15 84.3 55 76.4
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 5.6e-15 84.3 71 60.6
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 3.7e-14 81.6 71 56.3
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 1.4e-10 69.7 60 56.7
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 1.4e-10 69.7 60 56.7
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 3.2e-10 68.6 61 54.1
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 9.3e-10 67.0 60 56.7
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 1.2e-09 66.6 76 52.6
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 1.6e-09 66.2 62 51.6
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 2.1e-09 65.9 60 55.0
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 3.5e-09 65.1 61 49.2
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 4.6e-09 64.7 61 52.5
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 4.6e-09 64.7 61 54.1
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 6.0e-09 64.3 65 50.8
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 6.0e-09 64.3 61 52.5
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 7.9e-09 63.9 61 52.5
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 1.0e-08 63.5 60 55.0
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 1.8e-08 62.8 62 51.6
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 1.8e-08 62.8 62 51.6
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 3.9e-08 61.6 75 45.3
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 3.9e-08 61.6 61 50.8
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 1.1e-07 60.1 74 45.9
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 4.3e-07 58.2 61 45.9
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 5.7e-07 57.8 63 44.4
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 7.4e-07 57.4 80 43.8
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 7.4e-07 57.4 79 40.5
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 7.4e-07 57.4 63 52.4
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 7.4e-07 57.4 61 50.8
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 9.6e-07 57.0 62 48.4
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 9.6e-07 57.0 73 42.5
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 9.6e-07 57.0 62 48.4
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 1.3e-06 56.6 62 46.8
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 1.6e-06 56.2 65 46.2
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 1.6e-06 56.2 61 44.3
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 1.6e-06 56.2 63 49.2
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 2.1e-06 55.8 63 47.6
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.1e-06 55.8 34 73.5
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 2.1e-06 55.8 81 40.7
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 2.8e-06 55.5 63 50.8
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 3.7e-06 55.1 61 47.5
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 4.8e-06 54.7 63 49.2
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 4.8e-06 54.7 63 42.9
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 6.2e-06 54.3 67 35.8
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 6.2e-06 54.3 65 43.1
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 6.2e-06 54.3 62 46.8
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 8.2e-06 53.9 58 41.4
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 8.2e-06 53.9 58 44.8
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 8.2e-06 53.9 71 39.4
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 8.2e-06 53.9 78 42.3
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 8.2e-06 53.9 63 42.9


User provided reference genes

Program Settings