Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 5.6e-83 311.2 198 100.0
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 3.1e-73 278.9 196 94.4
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 9.3e-70 267.3 205 82.0
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 9.3e-70 267.3 205 86.3
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 3.5e-69 265.4 188 94.7
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 3.5e-69 265.4 188 94.7
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 1.1e-67 260.4 189 93.7
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 1.4e-65 253.4 198 81.8
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 1.4e-65 253.4 198 81.8
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 1.4e-65 253.4 198 81.8
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.0e-63 247.3 192 82.3
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.0e-63 247.3 192 82.3
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 2.9e-63 245.7 203 83.7
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.4e-62 243.4 203 81.8
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 6.0e-61 238.0 204 81.9
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 5.7e-59 231.5 205 70.7
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 2.4e-57 226.1 194 78.9
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 7.9e-53 211.1 205 69.8
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 2.6e-48 196.1 200 57.0
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 2.9e-47 192.6 202 68.3
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 5.0e-47 191.8 192 70.8
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 7.2e-46 188.0 200 58.0
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 4.6e-45 185.3 205 60.0
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 6.1e-45 184.9 193 69.4
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 2.3e-44 183.0 200 54.0
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 3.0e-44 182.6 193 56.5
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 3.9e-44 182.2 203 62.6
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 6.7e-44 181.4 200 59.5
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.5e-43 180.3 193 56.0
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.5e-43 180.3 193 56.0
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 2.5e-43 179.5 204 58.3
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 3.3e-43 179.1 201 60.2
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 4.3e-43 178.7 201 60.7
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.7e-42 176.8 195 64.1
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.7e-42 176.8 193 55.4
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.7e-42 176.8 198 56.1
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.8e-42 176.0 197 57.9
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 3.7e-42 175.6 198 66.7
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.8e-42 175.3 193 57.0
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 8.2e-42 174.5 194 56.7
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.1e-41 174.1 201 63.2
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 1.4e-41 173.7 192 56.2
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 1.8e-41 173.3 203 62.1
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 2.4e-41 172.9 192 67.2
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 2.4e-41 172.9 197 58.4
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 2.4e-41 172.9 200 65.0
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 9.1e-41 171.0 191 60.2
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 9.1e-41 171.0 195 65.6
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 1.2e-40 170.6 195 56.9
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 1.5e-40 170.2 186 67.2
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 2.0e-40 169.9 193 59.1
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 2.6e-40 169.5 192 57.8
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 2.6e-40 169.5 204 58.3
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 4.5e-40 168.7 204 54.9
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 5.9e-40 168.3 197 62.9
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 7.7e-40 167.9 206 54.4
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 7.7e-40 167.9 203 57.1
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 1.0e-39 167.5 191 62.8
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 1.3e-39 167.2 199 61.3
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 1.3e-39 167.2 193 59.6
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-39 167.2 194 54.6
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.7e-39 166.8 199 58.3
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.9e-39 166.0 198 63.6
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.9e-39 166.0 195 64.6
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 5.0e-39 165.2 188 57.4
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 5.0e-39 165.2 198 56.1
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 8.5e-39 164.5 202 65.3
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.1e-38 164.1 193 57.5
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.1e-38 164.1 193 66.8
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.4e-38 163.7 193 54.9
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 1.4e-38 163.7 199 56.3
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 2.5e-38 162.9 198 60.1
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 4.2e-38 162.2 193 63.2
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 5.5e-38 161.8 194 62.9
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 7.2e-38 161.4 200 52.0
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 7.2e-38 161.4 194 60.8
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 7.2e-38 161.4 193 57.5
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 1.2e-37 160.6 199 54.3
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.6e-37 160.2 205 58.5
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.6e-37 160.2 192 54.7
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 2.1e-37 159.8 194 58.2
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 2.7e-37 159.5 193 58.5
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 1.0e-36 157.5 201 52.2
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 1.4e-36 157.1 204 60.3
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 3.9e-36 155.6 194 60.8
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 8.8e-36 154.5 195 62.6
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.1e-35 154.1 203 63.1
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 2.6e-35 152.9 198 58.1
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 4.4e-35 152.1 195 52.3
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 4.4e-35 152.1 185 53.5
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 7.4e-35 151.4 196 64.3
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.7e-34 150.2 196 63.8
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 1.7e-34 150.2 200 61.0
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 4.8e-34 148.7 191 63.4
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 1.4e-33 147.1 197 62.9
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 1.8e-33 146.7 198 46.5
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 4.1e-33 145.6 204 49.0
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 2.0e-32 143.3 200 58.5
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 2.6e-32 142.9 202 52.5
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 4.5e-32 142.1 191 56.0
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.7e-31 140.2 198 55.1
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 3.2e-30 136.0 160 65.6
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 2.7e-29 132.9 192 44.3
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.4e-28 130.6 186 46.2
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 3.0e-28 129.4 126 57.9
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.5e-27 127.1 147 59.9
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 1.5e-27 127.1 121 57.0
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 3.7e-26 122.5 197 47.7
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 3.7e-26 122.5 189 53.4
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 4.8e-26 122.1 208 55.3
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.4e-25 119.8 140 54.3
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 7.0e-25 118.2 121 53.7
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.2e-24 117.5 189 40.2
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 7.7e-24 114.8 121 52.1
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 1.0e-23 114.4 117 54.7
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 1.0e-23 114.4 188 44.7
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.3e-23 114.0 140 52.9
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 6.5e-23 111.7 121 53.7
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.5e-22 110.5 121 51.2
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 2.5e-22 109.8 157 51.0
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 9.4e-22 107.8 121 50.4
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 6.1e-21 105.1 121 49.6
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-19 100.9 121 49.6
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 5.4e-17 92.0 185 51.9
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 1.2e-16 90.9 117 51.3
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 8.5e-15 84.7 113 49.6
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 4.2e-14 82.4 109 64.2
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 8.0e-13 78.2 89 52.8
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 3.0e-12 76.3 126 42.9
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 6.8e-12 75.1 124 48.4
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 2.0e-11 73.6 65 60.0
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 3.8e-07 59.3 84 41.7
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 8.6e-07 58.2 115 53.9
FvH4_3g27021 Fragaria vesca HOM05D005729 ORTHO05D007026 5.6e-06 55.5 43 60.5


User provided reference genes

Program Settings