Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04045 Brassica carinata HOM05D006537 ORTHO05D008186 6.8e-134 480.7 252 100.0
BraA03t11027Z Brassica rapa HOM05D006537 ORTHO05D008186 1.1e-131 473.4 252 98.4
A03p17600 Brassica napus HOM05D006537 ORTHO05D008186 1.4e-131 473.0 252 98.4
BcaC01g05952 Brassica carinata HOM05D006537 ORTHO05D008186 5.4e-131 471.1 252 98.0
C03p20710 Brassica napus HOM05D006537 ORTHO05D008186 5.4e-131 471.1 252 98.0
BolC3t14452H Brassica oleracea HOM05D006537 ORTHO05D008186 5.4e-131 471.1 252 98.0
Sp4g13920 Schrenkiella parvula HOM05D006537 ORTHO05D008186 2.6e-125 452.2 247 95.1
AL4G26710 Arabidopsis lyrata HOM05D006537 ORTHO05D008186 6.4e-124 447.6 246 93.5
AT2G31440 Arabidopsis thaliana HOM05D006537 ORTHO05D008186 6.4e-124 447.6 246 93.5
Thhalv10017140m.g Eutrema salsugineum HOM05D006537 ORTHO05D008186 5.4e-123 444.5 249 93.2
Carub.0004s1277 Capsella rubella HOM05D006537 ORTHO05D008186 9.2e-123 443.7 246 92.7
CARHR125090 Cardamine hirsuta HOM05D006537 ORTHO05D008186 1.9e-120 436.0 252 89.7
Aa31LG5G5440 Aethionema arabicum HOM05D006537 ORTHO05D008186 5.8e-109 397.9 246 84.6
TWI63G0033 Tripterygium wilfordii HOM05D006537 ORTHO05D008186 5.8e-109 397.9 247 78.9
MD04G1039500 Malus domestica HOM05D006537 ORTHO05D008186 1.3e-108 396.7 247 78.1
CiPaw.01G101300 Carya illinoinensis HOM05D006537 ORTHO05D008186 1.1e-107 393.7 247 78.9
Prupe.1G190300 Prunus persica HOM05D006537 ORTHO05D008186 2.4e-107 392.5 247 77.3
Dinv22722 Davidia involucrata HOM05D006537 ORTHO05D008186 5.4e-107 391.3 247 77.3
Thecc.04G185300 Theobroma cacao HOM05D006537 ORTHO05D008186 7.1e-107 391.0 245 77.6
Haze_01534 Corylus avellana HOM05D006537 ORTHO05D008186 1.2e-106 390.2 247 77.7
FvH4_4g11160 Fragaria vesca HOM05D006537 ORTHO05D008186 1.6e-106 389.8 245 79.2
Duzib212G0958 Durio zibethinus HOM05D006537 ORTHO05D008186 3.5e-106 388.7 245 76.7
ClCG08G004470 Citrullus lanatus HOM05D006537 ORTHO05D008186 4.6e-106 388.3 247 76.1
MELO3C011641.2 Cucumis melo HOM05D006537 ORTHO05D008186 7.8e-106 387.5 247 76.1
CSS0005792 Camellia sinensis var. sinensis HOM05D006537 ORTHO05D008186 1.7e-105 386.3 245 77.6
Ciclev10021930m.g Citrus clementina HOM05D006537 ORTHO05D008186 1.7e-105 386.3 242 80.2
Gohir.A02G015200 Gossypium hirsutum HOM05D006537 ORTHO05D008186 1.7e-105 386.3 245 75.5
Gohir.D02G016700 Gossypium hirsutum HOM05D006537 ORTHO05D008186 1.7e-105 386.3 245 75.9
QL10p048350 Quercus lobata HOM05D006537 ORTHO05D008186 5.1e-105 384.8 247 75.3
Solyc06g073410.3 Solanum lycopersicum HOM05D006537 ORTHO05D008186 5.1e-105 384.8 247 76.9
Sopen06g029790 Solanum pennellii HOM05D006537 ORTHO05D008186 5.1e-105 384.8 247 76.9
Potri.007G127400 Populus trichocarpa HOM05D006537 ORTHO05D008186 8.7e-105 384.0 243 78.6
GSVIVG01010746001 Vitis vinifera HOM05D006537 ORTHO05D008186 1.1e-104 383.6 245 76.3
Gorai.005G020200 Gossypium raimondii HOM05D006537 ORTHO05D008186 1.9e-104 382.9 245 75.1
PGSC0003DMG400027008 Solanum tuberosum HOM05D006537 ORTHO05D008186 5.6e-104 381.3 247 75.7
Atru.chr3.1537 Acer truncatum HOM05D006537 ORTHO05D008186 7.3e-104 380.9 247 76.5
Duzib268G1074 Durio zibethinus HOM05D006537 ORTHO05D008186 7.3e-104 380.9 245 75.5
CsaV3_6G003840 Cucumis sativus L. HOM05D006537 ORTHO05D008186 1.3e-103 380.2 244 76.2
Sed0000584 Sechium edule HOM05D006537 ORTHO05D008186 1.6e-103 379.8 252 75.0
TAR633G2589 Trochodendron aralioides HOM05D006537 ORTHO05D008186 3.6e-103 378.6 249 74.7
AUR62015408 Chenopodium quinoa HOM05D006537 ORTHO05D008186 4.8e-103 378.3 252 74.6
Nitab4.5_0004579g0020 Nicotiana tabacum HOM05D006537 ORTHO05D008186 1.4e-102 376.7 245 75.1
Eucgr.A00074 Eucalyptus grandis HOM05D006537 ORTHO05D008186 3.1e-102 375.6 242 76.0
Medtr4g067050 Medicago truncatula HOM05D006537 ORTHO05D008186 5.3e-102 374.8 242 74.8
Psat7g214000 Pisum sativum HOM05D006537 ORTHO05D008186 5.3e-102 374.8 242 74.4
THA.LOC104826193 Tarenaya hassleriana HOM05D006537 ORTHO05D008186 5.3e-102 374.8 245 78.8
Cc00_g09850 Coffea canephora HOM05D006537 ORTHO05D008186 6.9e-102 374.4 249 75.1
Eucgr.A00271 Eucalyptus grandis HOM05D006537 ORTHO05D008186 9.0e-102 374.0 242 76.0
Peaxi162Scf00375g00618 Petunia axillaris HOM05D006537 ORTHO05D008186 2.0e-101 372.9 247 73.7
Ca_20779_v3 Cicer arietinum L. HOM05D006537 ORTHO05D008186 2.6e-101 372.5 247 73.3
Oeu011639.1 Olea europaea HOM05D006537 ORTHO05D008186 3.4e-101 372.1 247 74.5
A10p04320 Brassica napus HOM05D006537 ORTHO05D008186 4.5e-101 371.7 201 93.5
arahy.Tifrunner.gnm1.ann1.RQ8JR0 Arachis hypogaea HOM05D006537 ORTHO05D008186 5.8e-101 371.3 240 75.0
arahy.Tifrunner.gnm1.ann1.W0CVEC Arachis hypogaea HOM05D006537 ORTHO05D008186 5.8e-101 371.3 240 75.0
Aqoxy2G04100 Aquilegia oxysepala HOM05D006537 ORTHO05D008186 2.2e-100 369.4 247 72.9
Lj3g0010197 Lotus japonicus HOM05D006537 ORTHO05D008186 6.4e-100 367.9 242 73.1
Glyma.11G128700 Glycine max HOM05D006537 ORTHO05D008186 8.4e-100 367.5 242 74.8
Lalb_Chr01g0003221 Lupinus albus HOM05D006537 ORTHO05D008186 8.4e-100 367.5 243 74.9
Actinidia35970 Actinidia chinensis HOM05D006537 ORTHO05D008186 1.1e-99 367.1 245 74.7
CANSAT78G1337 Cannabis sativa HOM05D006537 ORTHO05D008186 1.4e-99 366.7 245 74.3
Glyma.12G053200 Glycine max HOM05D006537 ORTHO05D008186 1.9e-99 366.3 242 74.8
PSO732G0008 Papaver somniferum HOM05D006537 ORTHO05D008186 2.4e-99 365.9 246 72.8
VMungo1127G2200 Vigna mungo HOM05D006537 ORTHO05D008186 2.4e-99 365.9 247 73.3
RcHm_v2.0_Chr4g0407291 Rosa chinensis HOM05D006537 ORTHO05D008186 4.2e-99 365.2 245 74.7
TPR.G34202 Trifolium pratense HOM05D006537 ORTHO05D008186 1.2e-98 363.6 242 72.7
PSO675G9308 Papaver somniferum HOM05D006537 ORTHO05D008186 1.6e-98 363.2 245 72.2
Actinidia34608 Actinidia chinensis HOM05D006537 ORTHO05D008186 2.1e-98 362.8 245 73.9
HanXRQChr14g0433111 Helianthus annuus HOM05D006537 ORTHO05D008186 2.1e-98 362.8 248 71.8
Rhsim09G0028500 Rhododendron simsii HOM05D006537 ORTHO05D008186 2.1e-98 362.8 257 70.8
Phvul.011G055200 Phaseolus vulgaris HOM05D006537 ORTHO05D008186 2.7e-98 362.5 247 72.5
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 2.7e-98 362.5 239 72.8
Migut.C00288 Erythranthe guttata HOM05D006537 ORTHO05D008186 3.5e-98 362.1 247 72.1
EL10Ac3g05587 Beta vulgaris HOM05D006537 ORTHO05D008186 6.0e-98 361.3 273 68.9
SGA_v2.0_scaffold74G24571 Striga asiatica HOM05D006537 ORTHO05D008186 1.3e-97 360.1 247 70.0
CDE04G1858 Ceratophyllum demersum HOM05D006537 ORTHO05D008186 4.0e-94 348.6 244 67.6
ECA238G3138 Erigeron canadensis HOM05D000961 ORTHO05D000001 1.3e-92 343.6 234 73.5
Lsat_1_v5_gn_2_34721 Lactuca sativa HOM05D006537 ORTHO05D008186 1.1e-91 340.5 248 69.0
CAN.G65.183 Capsicum annuum HOM05D006537 ORTHO05D008186 3.0e-89 332.4 247 67.6
Nn1g09574 Nelumbo nucifera HOM05D006537 ORTHO05D008186 3.0e-89 332.4 245 68.6
SEGI_14947 Sequoiadendron giganteum HOM05D006537 ORTHO05D008186 8.7e-89 330.9 239 67.4
Manes.04G042325 Manihot esculenta HOM05D006537 ORTHO05D008186 1.9e-88 329.7 203 82.3
COL.COLO4_24411 Corchorus olitorius HOM05D006537 ORTHO05D008186 9.6e-88 327.4 203 79.8
Zm00001eb237480 Zea mays HOM05D006537 ORTHO05D008186 1.4e-86 323.6 245 66.1
ATR0686G132 Amborella trichopoda HOM05D006537 ORTHO05D008186 4.0e-86 322.0 245 65.7
HPP92_005584 Vanilla planifolia HOM05D006537 ORTHO05D008186 4.0e-86 322.0 242 65.7
HPP92_005589 Vanilla planifolia HOM05D006537 ORTHO05D008186 5.3e-86 321.6 242 65.7
Nitab4.5_0003132g0110 Nicotiana tabacum HOM05D006537 ORTHO05D008186 1.5e-85 320.1 217 74.2
vmacro22675 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 4.9e-84 315.1 203 75.9
Sc25g0002980 Simmondsia chinensis HOM05D006537 ORTHO05D008186 1.1e-83 313.9 245 65.7
Os02g0272600 Oryza sativa ssp. japonica HOM05D006537 ORTHO05D008186 1.4e-83 313.5 245 62.9
Sabra07G0103400 Salix brachista HOM05D006537 ORTHO05D008186 1.4e-83 313.5 213 75.1
AUR62002287 Chenopodium quinoa HOM05D006537 ORTHO05D008186 3.0e-81 305.8 205 71.2
Dinv44198 Davidia involucrata HOM05D006537 ORTHO05D008186 7.4e-80 301.2 184 82.1
Cpa.g.sc409.1 Carica papaya HOM05D006537 ORTHO05D008186 5.3e-78 295.0 202 73.3
BraA10t42709Z Brassica rapa HOM05D006537 ORTHO05D008186 4.5e-77 292.0 162 93.2
PGR083G1737 Punica granatum HOM05D006537 ORTHO05D008186 2.9e-76 289.3 245 60.8
Lj6A56G22 Lonicera japonica HOM05D006537 ORTHO05D008186 5.1e-73 278.5 249 60.2
MSTRG.24999 Avicennia marina HOM05D006537 ORTHO05D008186 7.4e-72 274.6 245 59.6
Hund03149 Selenicereus undatus HOM05D006537 ORTHO05D008186 7.4e-72 274.6 260 59.2
AagrBONN_evm.TU.Sc2ySwM_344.2170 Anthoceros agrestis HOM05D006537 ORTHO05D008186 5.3e-70 268.5 238 56.7
Mapoly0042s0024 Marchantia polymorpha HOM05D006537 ORTHO05D008186 4.4e-64 248.8 241 52.7
SMO174G0097 Selaginella moellendorffii HOM05D006537 ORTHO05D008186 1.0e-60 237.7 238 53.8
Pp3c14_4280 Physcomitrium patens HOM05D006537 ORTHO05D008186 1.7e-60 236.9 244 49.2
FAN07G2858 Fragaria x ananassa HOM05D006537 ORTHO05D008186 8.8e-57 224.6 202 62.4
Pp3c10_5780 Physcomitrium patens HOM05D006537 ORTHO05D008186 8.8e-57 224.6 237 45.6
SHI21233 Sapria himalayana HOM05D006537 ORTHO05D008186 1.8e-49 200.3 161 60.2
A10p04420 Brassica napus HOM05D006537 ORTHO05D008186 1.8e-46 190.3 100 97.0
PSO675G6606 Papaver somniferum HOM05D006537 ORTHO05D008186 3.5e-45 186.0 151 60.9
PSO832G3398 Papaver somniferum HOM05D006537 ORTHO05D008186 1.0e-44 184.5 117 76.1
PSO675G1145 Papaver somniferum HOM05D006537 ORTHO05D008186 1.7e-44 183.7 159 59.7
PSO229G0026 Papaver somniferum HOM05D006537 ORTHO05D008186 2.9e-44 183.0 151 60.3
SalBow7G4202 Salvia bowleyana HOM05D006537 ORTHO05D008186 2.9e-44 183.0 115 72.2
PSO017G0422 Papaver somniferum HOM05D006537 ORTHO05D008186 5.0e-44 182.2 116 75.9
DCAR_022903 Daucus carota HOM05D006537 ORTHO05D008186 1.1e-35 154.5 119 66.4
BraA10t42699Z Brassica rapa HOM05D006537 ORTHO05D008186 5.5e-35 152.1 94 85.1
Cre13.g576300 Chlamydomonas reinhardtii HOM05D006537 ORTHO05D008186 1.8e-33 147.1 231 39.4
Lj6P622T45 Lonicera japonica HOM05D006537 ORTHO05D008186 1.2e-29 134.4 91 70.3
vmacro00700 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 3.4e-16 89.7 167 38.3
CBR_g29804 Chara braunii HOM05D006537 ORTHO05D008186 2.2e-15 87.0 70 60.0
Sopen06g005930 Solanum pennellii HOM05D006537 ORTHO05D008186 7.6e-08 62.0 38 86.8
Cpa.g.c46401 Carica papaya HOM05D006537 ORTHO05D008186 1.7e-07 60.8 42 57.1


User provided reference genes

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