Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04038 Brassica carinata HOM05D012534 ORTHO05D003275 1.4e-63 246.1 122 100.0
C03p20780 Brassica napus HOM05D012534 ORTHO05D003275 1.4e-63 246.1 122 100.0
BolC3t14445H Brassica oleracea HOM05D012534 ORTHO05D003275 1.5e-62 242.7 122 99.2
A03p17690 Brassica napus HOM05D012534 ORTHO05D003275 7.3e-57 223.8 122 94.3
BraA03t11034Z Brassica rapa HOM05D012534 ORTHO05D003275 7.3e-57 223.8 122 94.3
Sp4g05350 Schrenkiella parvula HOM05D012534 ORTHO05D003275 1.2e-46 189.9 124 85.5
Thhalv10000375m.g Eutrema salsugineum HOM05D012534 ORTHO05D003275 3.4e-46 188.3 126 81.7
AL4G17390 Arabidopsis lyrata HOM05D012534 ORTHO05D003275 4.1e-44 181.4 123 82.1
Carub.0004s0551 Capsella rubella HOM05D012534 ORTHO05D003275 1.3e-42 176.4 132 75.8
CARHR115510 Cardamine hirsuta HOM05D012534 ORTHO05D003275 5.1e-42 174.5 122 79.5
AT2G25735 Arabidopsis thaliana HOM05D012534 ORTHO05D003275 4.7e-40 167.9 125 77.6
Aa31LG5G9940 Aethionema arabicum HOM05D012534 ORTHO05D003275 3.9e-34 148.3 117 69.2
Carub.0005s0152 Capsella rubella HOM05D012534 ORTHO05D003275 6.9e-23 110.9 117 62.4
THA.LOC104803771 Tarenaya hassleriana HOM05D012534 ORTHO05D003275 1.9e-20 102.8 120 53.3
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.2e-12 75.5 108 47.2
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.2e-11 73.6 108 46.3
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.2e-11 73.6 108 46.3
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 2.7e-11 72.4 108 39.8
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 6.0e-11 71.2 105 41.9
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 1.8e-10 69.7 108 39.8
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.1e-09 67.0 100 44.0
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.5e-09 66.6 102 39.2
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 1.9e-09 66.2 114 40.4
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.3e-09 65.5 101 38.6
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.3e-09 65.5 101 38.6
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 3.3e-09 65.5 99 41.4
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 7.4e-09 64.3 75 45.3
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 1.3e-08 63.5 119 39.5
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 1.6e-08 63.2 116 39.7
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 1.6e-08 63.2 75 45.3
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 6.2e-08 61.2 113 38.9
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 6.2e-08 61.2 113 38.9
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 6.2e-08 61.2 114 36.0
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 1.1e-07 60.5 118 37.3
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 1.4e-07 60.1 94 43.6
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 1.4e-07 60.1 83 39.8
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.4e-07 59.3 112 39.3
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 3.1e-07 58.9 109 37.6
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 6.9e-07 57.8 108 37.0
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 2.6e-06 55.8 120 35.0
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.6e-06 55.8 91 40.7
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 3.4e-06 55.5 77 39.0
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.4e-06 55.5 77 39.0
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.4e-06 55.5 77 39.0
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 4.5e-06 55.1 119 35.3
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 4.5e-06 55.1 93 41.9
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 4.5e-06 55.1 116 32.8
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 4.5e-06 55.1 68 45.6
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 4.5e-06 55.1 100 37.0
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 4.5e-06 55.1 106 37.7
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 7.6e-06 54.3 117 34.2
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 7.6e-06 54.3 117 34.2
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 7.6e-06 54.3 77 39.0
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 7.6e-06 54.3 62 48.4
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 1.0e-05 53.9 100 37.0


User provided reference genes

Program Settings