Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03979 Brassica carinata HOM05D000578 ORTHO05D000422 1.9e-72 275.8 141 100.0
A09p28770 Brassica napus HOM05D000578 ORTHO05D000422 2.0e-42 176.0 91 97.8
BraA09t38438Z Brassica rapa HOM05D000578 ORTHO05D000422 2.0e-42 176.0 91 97.8
BcaB01g01460 Brassica carinata HOM05D000578 ORTHO05D000422 2.6e-42 175.6 137 74.5
BcaC04g21024 Brassica carinata HOM05D000578 ORTHO05D000422 2.9e-41 172.2 91 95.6
C09p36540 Brassica napus HOM05D000578 ORTHO05D000422 2.9e-41 172.2 91 95.6
BolC9t56488H Brassica oleracea HOM05D000578 ORTHO05D000422 2.9e-41 172.2 91 95.6
Sp6g07210 Schrenkiella parvula HOM05D000578 ORTHO05D000422 1.4e-35 153.3 91 87.9
Thhalv10029034m.g Eutrema salsugineum HOM05D000578 ORTHO05D000422 2.4e-35 152.5 91 84.6
AT4G10240 Arabidopsis thaliana HOM05D000578 ORTHO05D000422 2.2e-33 146.0 92 82.6
AL6G44070 Arabidopsis lyrata HOM05D000578 ORTHO05D000422 1.1e-32 143.7 92 82.6
Aa31LG9G11760 Aethionema arabicum HOM05D000578 ORTHO05D000422 1.3e-28 130.2 84 76.2
CARHR256620 Cardamine hirsuta HOM05D000578 ORTHO05D000422 4.5e-26 121.7 84 73.8
Carub.0006s2879 Capsella rubella HOM05D000578 ORTHO05D000422 7.9e-23 110.9 81 74.1
THA.LOC104815661 Tarenaya hassleriana HOM05D000578 ORTHO05D000422 3.9e-14 82.0 77 58.4
Zm00001eb270930 Zea mays HOM05D000578 ORTHO05D000422 2.1e-07 59.7 40 72.5
Zm00001eb376730 Zea mays HOM05D000578 ORTHO05D000422 2.1e-07 59.7 40 72.5
Os06g0152200 Oryza sativa ssp. japonica HOM05D000578 ORTHO05D000422 4.7e-07 58.5 40 70.0
TAR626G1594 Trochodendron aralioides HOM05D000578 ORTHO05D000422 6.1e-07 58.2 93 41.9
CDE02G2836 Ceratophyllum demersum HOM05D000578 ORTHO05D000422 1.0e-06 57.4 92 39.1
Ca_15344_v3 Cicer arietinum L. HOM05D000578 ORTHO05D000422 1.0e-06 57.4 82 41.5
Gohir.A08G234180 Gossypium hirsutum HOM05D000578 ORTHO05D000422 1.0e-06 57.4 54 55.6
Gorai.004G271600 Gossypium raimondii HOM05D000578 ORTHO05D000422 1.0e-06 57.4 54 55.6
HanXRQChr10g0305591 Helianthus annuus HOM05D000578 ORTHO05D000422 1.0e-06 57.4 53 52.8
Duzib268G1026 Durio zibethinus HOM05D000578 ORTHO05D000422 1.4e-06 57.0 91 39.6
TAR624G1389 Trochodendron aralioides HOM05D000578 ORTHO05D000422 1.4e-06 57.0 93 41.9
Glyma.12G233900 Glycine max HOM05D000578 ORTHO05D000422 2.3e-06 56.2 73 45.2
HanXRQChr14g0439351 Helianthus annuus HOM05D000578 ORTHO05D000422 2.3e-06 56.2 57 54.4
Hma1.2p1_0050F.1_g028790 Hydrangea macrophylla HOM05D000578 ORTHO05D000422 2.3e-06 56.2 54 59.3
MSTRG.6689 Avicennia marina HOM05D000578 ORTHO05D000422 3.0e-06 55.8 68 51.5
Duzib213G1040 Durio zibethinus HOM05D000578 ORTHO05D000422 3.0e-06 55.8 92 39.1
HanXRQChr13g0389721 Helianthus annuus HOM05D000578 ORTHO05D000422 3.0e-06 55.8 80 38.8
Medtr3g117320 Medicago truncatula HOM05D000578 ORTHO05D000422 3.0e-06 55.8 81 43.2
Phvul.005G076700 Phaseolus vulgaris HOM05D000578 ORTHO05D000422 3.0e-06 55.8 58 53.4
Oeu025327.2 Olea europaea HOM05D000578 ORTHO05D000422 4.0e-06 55.5 52 53.8
Zm00001eb283990 Zea mays HOM05D000578 ORTHO05D000422 4.0e-06 55.5 42 59.5
CiPaw.12G110700 Carya illinoinensis HOM05D000578 ORTHO05D000422 5.2e-06 55.1 84 42.9
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 5.2e-06 55.1 65 52.3
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 5.2e-06 55.1 61 50.8
PSO210G7325 Papaver somniferum HOM05D000578 ORTHO05D000422 5.2e-06 55.1 61 47.5
PSO447G0156 Papaver somniferum HOM05D000578 ORTHO05D000422 5.2e-06 55.1 61 47.5
Thecc.07G132800 Theobroma cacao HOM05D000578 ORTHO05D000422 5.2e-06 55.1 104 37.5
Dinv13364 Davidia involucrata HOM05D000578 ORTHO05D000422 6.7e-06 54.7 53 54.7
ECA240G2705 Erigeron canadensis HOM05D000578 ORTHO05D000422 6.7e-06 54.7 52 51.9
Migut.M00693 Erythranthe guttata HOM05D000578 ORTHO05D000422 6.7e-06 54.7 38 68.4
Gohir.D08G254566 Gossypium hirsutum HOM05D000578 ORTHO05D000422 6.7e-06 54.7 49 57.1
MSTRG.12861 Avicennia marina HOM05D000578 ORTHO05D000422 8.8e-06 54.3 69 44.9
EL10Ac4g08416 Beta vulgaris HOM05D000578 ORTHO05D000422 8.8e-06 54.3 51 54.9
CDE04G3632 Ceratophyllum demersum HOM05D000050 ORTHO05D002548 8.8e-06 54.3 84 44.0
Glyma.09G099000 Glycine max HOM05D000578 ORTHO05D000422 8.8e-06 54.3 69 44.9
Lj3g0020526 Lotus japonicus HOM05D000578 ORTHO05D000422 8.8e-06 54.3 69 46.4
Lj3g0021140 Lotus japonicus HOM05D000578 ORTHO05D000422 8.8e-06 54.3 69 46.4
Lalb_Chr20g0109141 Lupinus albus HOM05D000578 ORTHO05D000422 8.8e-06 54.3 58 50.0
MBI06_g17070_MAGBIO Magnolia biondii HOM05D000578 ORTHO05D000422 8.8e-06 54.3 53 50.9
Os05g0204600 Oryza sativa ssp. japonica HOM05D000578 ORTHO05D000422 8.8e-06 54.3 42 57.1
GSVIVG01037095001 Vitis vinifera HOM05D000578 ORTHO05D000422 8.8e-06 54.3 73 43.8


User provided reference genes

Program Settings