Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 8.2e-160 567.0 286 100.0
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 8.2e-144 513.8 281 91.5
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 1.4e-143 513.1 281 91.5
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 1.2e-142 510.0 281 91.5
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 1.2e-142 510.0 281 91.5
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 1.2e-142 510.0 281 91.5
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 1.2e-134 483.4 281 86.8
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 2.2e-128 462.6 280 83.2
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 6.3e-128 461.1 281 85.4
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 2.5e-124 449.1 281 81.1
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 1.5e-105 386.7 264 75.4
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 8.3e-104 380.9 272 70.2
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 8.4e-88 327.8 270 62.2
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 8.4e-88 327.8 218 78.9
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 1.7e-85 320.1 235 64.7
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 1.9e-84 316.6 284 56.3
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 2.5e-84 316.2 272 57.7
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 1.6e-83 313.5 258 60.1
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 2.1e-83 313.2 280 56.8
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 2.1e-83 313.2 259 59.5
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 3.6e-83 312.4 276 58.0
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.1e-82 310.8 261 59.0
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 1.1e-82 310.8 224 65.2
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.4e-82 310.5 259 59.5
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 1.8e-82 310.1 239 62.8
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 3.1e-82 309.3 224 65.6
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 3.4e-81 305.8 247 60.3
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 3.4e-81 305.8 247 60.3
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 9.9e-81 304.3 258 58.5
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 9.9e-81 304.3 247 61.5
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 1.7e-80 303.5 251 59.8
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 3.8e-80 302.4 260 58.1
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 4.9e-80 302.0 224 64.3
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 8.4e-80 301.2 248 60.9
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 1.1e-79 300.8 258 57.4
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.9e-79 300.1 277 54.2
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 1.9e-79 300.1 277 54.2
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 4.2e-79 298.9 252 59.1
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 9.3e-79 297.7 246 57.7
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 9.3e-79 297.7 277 53.8
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 9.3e-79 297.7 273 56.4
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 1.6e-78 297.0 238 59.7
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 1.6e-78 297.0 251 58.2
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 1.6e-78 297.0 252 56.3
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 2.1e-78 296.6 251 57.0
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 4.6e-78 295.4 253 57.3
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 6.0e-78 295.0 251 57.0
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 1.0e-77 294.3 252 56.7
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 1.0e-77 294.3 277 55.2
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 1.0e-77 294.3 247 58.7
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 1.0e-77 294.3 254 57.9
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 1.3e-77 293.9 274 54.7
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 8.7e-77 291.2 247 57.1
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 8.7e-77 291.2 224 60.7
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 8.7e-77 291.2 250 58.4
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 1.1e-76 290.8 252 54.0
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 1.1e-76 290.8 251 56.6
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 3.3e-76 289.3 239 58.6
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 5.6e-76 288.5 247 55.5
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 7.4e-76 288.1 242 58.3
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 7.4e-76 288.1 250 57.6
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 9.6e-76 287.7 224 59.4
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 2.1e-75 286.6 247 56.7
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 6.2e-75 285.0 246 56.1
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 8.1e-75 284.6 223 62.8
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 1.2e-73 280.8 230 62.2
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 1.5e-73 280.4 246 56.9
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 7.6e-73 278.1 241 56.8
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 9.9e-73 277.7 249 54.2
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.7e-72 276.9 230 61.7
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 2.2e-72 276.6 249 53.8
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 3.8e-72 275.8 260 53.5
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 6.4e-72 275.0 252 52.8
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.9e-71 273.5 230 60.9
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 2.3e-69 266.5 251 57.0
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 3.3e-68 262.7 227 53.3
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 5.6e-68 261.9 218 61.0
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 5.6e-68 261.9 223 59.6
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 1.3e-67 260.8 219 60.3
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 6.2e-67 258.5 224 54.5
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 2.2e-64 250.0 227 52.4
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 4.9e-64 248.8 222 55.4
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 6.5e-64 248.4 134 91.0
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 3.2e-63 246.1 205 60.0
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 1.0e-61 241.1 211 57.8
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 3.0e-61 239.6 230 54.8
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 1.1e-60 237.7 173 63.6
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 7.4e-60 235.0 233 49.4
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 2.1e-59 233.4 227 48.5
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 1.0e-56 224.6 190 56.3
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 1.1e-55 221.1 220 45.9
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 4.3e-52 209.1 177 59.3
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 1.3e-51 207.6 165 58.8
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 5.0e-48 195.7 182 53.8
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.1e-44 184.5 256 40.6
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 8.5e-40 168.3 227 37.0
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 8.5e-40 168.3 133 58.6
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.4e-39 167.5 181 44.8
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 4.2e-39 166.0 222 37.8
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 9.4e-39 164.9 141 56.7
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 7.9e-38 161.8 178 51.7
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 2.0e-36 157.1 219 37.9
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 2.3e-29 133.7 136 54.4
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 1.7e-27 127.5 133 49.6
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.2e-25 121.3 125 49.6
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.6e-25 120.9 194 34.0
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.1e-23 114.8 230 30.4
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.5e-20 104.4 227 28.2
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 6.3e-19 99.0 204 30.9
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 7.7e-17 92.0 103 51.5
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 1.3e-16 91.3 74 55.4
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 5.0e-16 89.4 224 27.7
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 9.5e-15 85.1 114 41.2
Carub.0004s3068 Capsella rubella HOM05D006617 ORTHO05D008247 2.8e-14 83.6 48 87.5
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 4.1e-10 69.7 220 25.0
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 5.4e-10 69.3 220 25.5
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 9.2e-10 68.6 235 25.5
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 1.2e-09 68.2 225 25.3
Pp3c15_7020 Physcomitrium patens HOM05D003252 ORTHO05D003640 1.2e-09 68.2 201 25.4
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 1.6e-09 67.8 66 54.5
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 1.0e-08 65.1 218 27.5
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 2.3e-08 63.9 225 24.9
BolC1t03946H Brassica oleracea HOM05D003252 ORTHO05D003640 5.0e-08 62.8 217 25.3
Sabra16G0278400 Salix brachista HOM05D003252 ORTHO05D003640 5.0e-08 62.8 238 23.9
Sp3g21430 Schrenkiella parvula HOM05D003252 ORTHO05D003640 5.0e-08 62.8 227 25.1
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 1.1e-07 61.6 204 26.0
Sabra16G0273800 Salix brachista HOM05D003252 ORTHO05D003640 1.1e-07 61.6 238 23.5
Sabra16G0274300 Salix brachista HOM05D003252 ORTHO05D003640 1.1e-07 61.6 238 23.5
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 1.5e-07 61.2 227 25.1
COL.COLO4_18119 Corchorus olitorius HOM05D003252 ORTHO05D003640 1.5e-07 61.2 216 23.1
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 1.5e-07 61.2 273 24.2
Gohir.A05G033001 Gossypium hirsutum HOM05D003252 ORTHO05D003640 3.3e-07 60.1 216 25.5
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 3.3e-07 60.1 225 25.3
C01p39910 Brassica napus HOM05D003252 ORTHO05D003640 4.3e-07 59.7 217 24.9
CiPaw.04G145000 Carya illinoinensis HOM05D003252 ORTHO05D003640 5.6e-07 59.3 241 24.5
A01p31300 Brassica napus HOM05D003252 ORTHO05D003640 7.3e-07 58.9 219 24.7
Aqoxy7G04115 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 9.5e-07 58.5 116 26.7
arahy.Tifrunner.gnm1.ann1.25CQ7A Arachis hypogaea HOM05D003252 ORTHO05D003640 9.5e-07 58.5 236 23.3
arahy.Tifrunner.gnm1.ann1.B65556 Arachis hypogaea HOM05D003252 ORTHO05D003640 9.5e-07 58.5 236 23.3
PSO386G0167 Papaver somniferum HOM05D003252 ORTHO05D003640 9.5e-07 58.5 241 22.4
BraA01t03256Z Brassica rapa HOM05D003252 ORTHO05D003640 1.2e-06 58.2 219 24.7
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 1.2e-06 58.2 69 44.9
Cfa003021 Carpinus fangiana HOM05D003252 ORTHO05D003640 1.6e-06 57.8 226 23.0
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 2.1e-06 57.4 226 23.0
Thecc.09G079800 Theobroma cacao HOM05D003252 ORTHO05D003640 2.1e-06 57.4 219 23.7
Phvul.003G132200 Phaseolus vulgaris HOM05D003252 ORTHO05D003640 2.8e-06 57.0 235 24.3
Atru.chr7.1677 Acer truncatum HOM05D003252 ORTHO05D003640 4.7e-06 56.2 215 22.3
Sed0020871 Sechium edule HOM05D003252 ORTHO05D003640 6.1e-06 55.8 236 25.4


User provided reference genes

Program Settings