Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 3.8e-109 399.8 206 100.0
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 6.5e-85 319.3 206 84.0
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 6.5e-85 319.3 207 83.6
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 3.2e-84 317.0 207 83.1
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 2.3e-82 310.8 206 83.0
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 8.2e-80 302.4 206 81.1
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 6.5e-69 266.2 214 68.7
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.0e-66 258.8 207 69.1
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 2.8e-64 250.8 215 64.2
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 5.9e-62 243.0 215 65.6
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.5e-60 237.7 207 67.1
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 8.5e-53 212.6 208 58.2
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.8e-50 204.9 215 56.3
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 1.1e-44 185.7 204 54.9
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 1.3e-29 135.6 195 42.6
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 1.7e-29 135.2 200 41.5
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.5e-28 132.1 206 40.3
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 3.3e-28 131.0 183 42.1
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 9.5e-28 129.4 199 40.7
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 9.5e-28 129.4 206 41.7
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 1.2e-27 129.0 204 43.1
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 3.6e-27 127.5 186 41.9
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 4.7e-27 127.1 208 40.9
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 4.7e-27 127.1 205 41.0
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 6.2e-27 126.7 199 40.7
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 1.4e-26 125.6 180 43.3
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.8e-26 125.2 190 42.1
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 2.3e-26 124.8 183 42.1
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.3e-26 124.8 174 43.7
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 3.1e-26 124.4 197 44.2
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 4.0e-26 124.0 180 42.8
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 2.0e-25 121.7 183 40.4
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 2.0e-25 121.7 208 38.5
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 2.6e-25 121.3 159 43.4
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 3.4e-25 120.9 180 44.4
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 4.4e-25 120.6 152 43.4
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 5.8e-25 120.2 164 43.3
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 1.7e-24 118.6 192 38.0
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 2.9e-24 117.9 175 40.6
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.9e-24 117.9 190 37.9
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 4.9e-24 117.1 200 39.0
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 4.9e-24 117.1 210 35.2
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 8.3e-24 116.3 152 41.4
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.1e-23 115.9 196 38.3
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.1e-23 115.9 196 38.3
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 1.4e-23 115.5 178 38.8
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 2.4e-23 114.8 180 40.0
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 5.4e-23 113.6 166 38.0
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 9.2e-23 112.8 183 39.3
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 2.7e-22 111.3 158 41.8
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 4.6e-22 110.5 160 39.4
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 6.0e-22 110.2 209 37.8
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 7.8e-22 109.8 191 38.2
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 1.3e-21 109.0 150 39.3
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 1.7e-21 108.6 160 38.8
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.7e-21 108.6 200 39.0
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 2.3e-21 108.2 209 32.5
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 6.6e-21 106.7 153 43.1
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 6.6e-21 106.7 197 39.1
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 8.6e-21 106.3 197 37.1
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.5e-20 105.5 197 39.1
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.9e-20 105.1 209 36.4
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 3.3e-20 104.4 95 62.1
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 4.3e-20 104.0 158 38.6
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 5.6e-20 103.6 162 39.5
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 9.5e-20 102.8 167 38.3
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 1.6e-19 102.1 209 38.3
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.1e-19 101.7 167 38.9
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.1e-19 101.7 167 38.9
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.1e-19 101.7 178 38.8
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 2.8e-19 101.3 189 37.0
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 3.6e-19 100.9 192 35.9
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 4.7e-19 100.5 204 35.3
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 6.2e-19 100.1 202 35.1
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 6.2e-19 100.1 159 39.0
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 6.2e-19 100.1 152 39.5
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 8.1e-19 99.8 226 34.1
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 5.2e-18 97.1 211 34.6
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 6.8e-18 96.7 210 34.3
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.5e-17 95.5 208 34.1
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.0e-17 95.1 143 41.3
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 2.9e-16 91.3 151 39.7
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 3.7e-16 90.9 156 39.1
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 4.9e-16 90.5 171 35.7
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 1.1e-15 89.4 157 35.0
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 1.4e-15 89.0 209 32.1
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 7.1e-15 86.7 167 31.1
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 7.1e-15 86.7 159 36.5
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 7.1e-15 86.7 199 33.2
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 9.2e-15 86.3 167 31.7
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 1.2e-14 85.9 169 34.9
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 4.6e-14 84.0 157 35.7
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 7.8e-14 83.2 103 43.7
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.3e-13 82.4 157 35.0
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 1.7e-13 82.0 151 35.1
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 3.9e-13 80.9 157 33.1
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 3.9e-13 80.9 196 33.2
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 3.9e-13 80.9 195 28.7
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 5.1e-13 80.5 168 32.1
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 6.6e-13 80.1 167 30.5
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 6.6e-13 80.1 198 27.8
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 8.6e-13 79.7 170 29.4
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 8.6e-13 79.7 157 33.1
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 1.1e-12 79.3 161 36.0
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 1.5e-12 79.0 161 36.0
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.5e-12 79.0 207 28.5
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 3.3e-12 77.8 202 32.2
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 4.3e-12 77.4 151 30.5
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.8e-11 74.7 216 28.7
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 2.8e-11 74.7 169 33.1
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 3.6e-11 74.3 89 43.8
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 1.1e-10 72.8 210 27.1
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.1e-10 72.8 152 32.9
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.4e-10 72.4 98 39.8
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.8e-10 72.0 129 31.0
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.3e-10 71.6 215 30.2
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 6.8e-10 70.1 188 27.7
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 2.0e-09 68.6 188 26.1
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 3.4e-09 67.8 166 28.3
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 3.4e-09 67.8 233 28.3
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 5.8e-09 67.0 147 26.5
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 9.9e-09 66.2 92 40.2
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 4.9e-08 63.9 219 27.9
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 8.4e-08 63.2 163 27.0
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 1.9e-07 62.0 183 27.9
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 3.2e-07 61.2 57 49.1
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 9.2e-07 59.7 149 30.9
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 2.7e-06 58.2 54 46.3
CANSAT11G1641 Cannabis sativa HOM05D004255 ORTHO05D004815 3.5e-06 57.8 55 49.1
CANSAT21G1589 Cannabis sativa HOM05D004255 ORTHO05D004815 3.5e-06 57.8 55 49.1


User provided reference genes

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