Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.4e-145 518.8 266 100.0
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 3.7e-138 495.0 267 95.1
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.1e-137 493.4 267 95.5
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 5.3e-137 491.1 267 95.1
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 6.5e-135 484.2 286 89.2
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 1.4e-134 483.0 267 92.5
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 3.2e-134 481.9 267 92.9
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 2.7e-133 478.8 286 88.8
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.0e-127 460.3 265 89.4
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 2.5e-126 455.7 260 90.0
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 7.2e-126 454.1 268 88.8
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 4.7e-125 451.4 259 90.3
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 8.0e-125 450.7 251 92.4
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.7e-124 447.6 261 89.3
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.2e-123 446.8 265 87.2
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 5.7e-123 444.5 268 87.3
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 1.3e-122 443.4 266 87.2
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.8e-121 439.5 270 85.2
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 4.5e-120 434.9 271 85.2
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.7e-117 425.6 268 85.1
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 2.2e-114 416.0 269 80.3
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 4.8e-114 414.8 269 80.7
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 1.1e-113 413.7 269 80.3
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 4.1e-113 411.8 270 80.0
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 9.1e-113 410.6 271 78.2
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 1.6e-112 409.8 270 80.7
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 2.7e-112 409.1 269 78.4
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 5.9e-112 407.9 269 77.3
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.0e-111 407.1 269 78.4
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.2e-111 406.0 268 78.7
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 2.9e-111 405.6 269 78.4
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 3.8e-111 405.2 264 80.7
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 5.0e-111 404.8 268 77.6
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 8.5e-111 404.1 284 76.8
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 1.5e-110 403.3 269 78.1
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 2.5e-110 402.5 260 80.4
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 4.2e-110 401.7 268 77.2
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 7.2e-110 401.0 279 76.3
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 9.5e-110 400.6 269 77.0
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 1.2e-109 400.2 269 77.0
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.6e-109 398.7 268 77.6
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 3.6e-109 398.7 260 80.8
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.6e-109 398.7 269 77.3
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 8.0e-109 397.5 271 76.8
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 8.0e-109 397.5 269 76.2
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.8e-108 396.4 271 76.8
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 1.8e-108 396.4 268 78.4
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.3e-108 396.0 267 76.8
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.0e-108 395.6 271 76.4
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 3.0e-108 395.6 267 78.7
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 5.2e-108 394.8 259 81.5
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.5e-107 393.3 274 77.0
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.5e-107 393.3 268 78.0
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 2.0e-107 392.9 266 76.7
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 2.0e-107 392.9 260 77.7
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.4e-107 392.1 269 75.8
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.4e-107 391.7 274 76.6
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 5.7e-107 391.3 268 75.4
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 5.7e-107 391.3 253 78.7
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 5.7e-107 391.3 266 77.4
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.3e-106 390.2 263 78.3
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 1.3e-106 390.2 266 75.9
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.3e-106 390.2 266 75.9
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.2e-106 389.4 274 76.3
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.2e-106 389.4 271 76.0
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 3.7e-106 388.7 263 75.7
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 4.9e-106 388.3 268 75.4
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 4.9e-106 388.3 264 76.5
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 6.3e-106 387.9 267 77.2
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 6.3e-106 387.9 264 77.7
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 8.3e-106 387.5 265 76.6
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.4e-105 386.7 268 75.4
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.4e-105 386.0 288 73.6
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 4.1e-105 385.2 268 76.1
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 4.1e-105 385.2 215 92.1
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 4.1e-105 385.2 258 77.1
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 9.2e-105 384.0 257 77.8
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 3.5e-104 382.1 250 80.0
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 4.5e-104 381.7 266 74.1
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.9e-104 381.3 268 76.5
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 7.8e-104 380.9 262 76.0
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.3e-103 380.2 266 74.8
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.7e-103 379.8 257 77.8
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 5.0e-103 378.3 257 77.4
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.6e-103 377.9 259 77.6
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.5e-102 376.7 254 76.8
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 3.3e-102 375.6 267 72.3
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 4.3e-102 375.2 269 74.0
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 5.6e-102 374.8 267 71.9
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 7.3e-102 374.4 270 74.8
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 7.3e-102 374.4 261 75.5
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.1e-101 371.3 269 74.3
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.0e-100 370.5 269 74.3
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.0e-100 370.5 268 75.7
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 3.0e-100 369.0 268 71.6
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.2e-99 367.1 263 74.5
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.5e-99 366.7 261 73.6
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 2.6e-99 365.9 268 70.9
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 2.6e-99 365.9 314 64.3
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 5.7e-99 364.8 268 70.9
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.3e-98 363.6 268 71.6
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.3e-98 363.6 268 70.5
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 9.2e-97 357.5 244 77.0
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.2e-96 357.1 244 77.0
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 2.0e-96 356.3 244 77.0
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 2.0e-96 356.3 263 74.9
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 4.6e-96 355.1 266 69.9
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 3.0e-95 352.4 248 76.2
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 9.5e-94 347.4 267 68.2
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 8.0e-93 344.4 230 78.7
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.1e-92 344.0 271 69.7
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 2.3e-92 342.8 246 73.2
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.5e-91 340.1 228 77.6
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 2.2e-90 336.3 267 66.7
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.1e-89 334.0 235 72.8
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.6e-87 324.3 266 65.8
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 3.3e-86 322.4 228 76.3
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.2e-85 320.5 228 75.0
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 2.1e-85 319.7 237 72.6
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 8.3e-82 307.8 225 74.7
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 1.1e-81 307.4 249 67.1
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 2.3e-79 299.7 215 75.3
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.1e-78 297.4 241 65.1
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.3e-78 295.4 179 84.9
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.6e-78 295.0 179 82.1
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 1.2e-77 293.9 263 63.5
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 2.4e-76 289.7 232 69.4
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 3.8e-74 282.3 243 64.2
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 3.9e-71 272.3 239 58.2
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 6.6e-71 271.6 219 65.8
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 5.6e-70 268.5 279 52.0
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 7.3e-70 268.1 232 61.6
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.4e-68 263.8 174 78.7
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.8e-68 263.5 262 54.6
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 4.0e-68 262.3 245 59.2
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 4.0e-68 262.3 244 56.6
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.6e-67 259.6 179 72.6
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 1.1e-62 244.2 177 66.1
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.5e-62 243.8 230 60.4
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.2e-59 234.2 163 73.0
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.1e-57 227.6 199 64.3
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 5.4e-57 225.3 139 82.0
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-52 211.1 259 54.4
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.0e-47 194.5 214 46.3
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.8e-45 186.4 159 65.4
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 3.7e-45 186.0 171 63.7
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.3e-37 161.0 118 72.0
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 1.1e-36 157.9 120 70.8
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.9e-35 152.1 113 71.7
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.3e-30 136.3 77 85.7
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.4e-28 130.2 82 79.3
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 5.9e-27 125.6 64 93.8
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 3.2e-17 93.2 65 80.0
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 4.4e-14 82.8 88 54.5
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.3e-12 75.9 45 80.0
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.7e-10 70.9 63 65.1
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 5.0e-10 69.3 45 75.6
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.2e-09 65.5 79 51.9


User provided reference genes

Program Settings