Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 0.0e+00 1281.2 692 100.0
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 0.0e+00 1191.0 693 90.6
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 0.0e+00 1178.7 693 89.8
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 0.0e+00 1174.5 694 89.5
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 0.0e+00 1172.5 695 89.8
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 0.0e+00 1158.3 692 87.9
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 0.0e+00 1130.9 694 85.0
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 0.0e+00 1093.2 700 83.0
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 0.0e+00 1080.1 698 82.7
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 4.3e-311 1070.8 700 81.7
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 2.2e-307 1058.5 703 80.1
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 4.0e-301 1037.7 693 82.3
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 8.8e-301 1036.6 693 82.1
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 6.6e-296 1020.4 693 80.4
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.9e-295 1018.8 690 78.0
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.9e-295 1018.8 693 80.4
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 6.3e-291 1003.8 699 80.1
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 9.2e-290 1000.0 676 81.2
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 9.9e-268 926.8 695 68.5
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 4.7e-262 907.9 695 67.2
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 7.9e-241 837.4 671 72.9
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.3e-222 776.9 694 60.1
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 1.6e-222 776.5 697 60.8
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 9.0e-221 770.8 694 60.2
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.5e-220 770.0 694 57.5
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 5.9e-220 768.1 694 57.6
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 1.7e-219 766.5 498 81.1
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 2.2e-219 766.1 697 57.5
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 2.9e-219 765.8 685 58.5
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 2.7e-217 759.2 695 57.3
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.1e-215 753.8 651 59.9
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 1.5e-215 753.4 694 56.3
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 5.7e-215 751.5 694 55.9
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 1.3e-214 750.4 695 58.1
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 3.7e-214 748.8 682 61.6
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 1.4e-213 746.9 699 57.2
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.4e-213 746.1 697 56.5
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.7e-211 740.0 684 56.6
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 2.6e-207 726.1 684 55.6
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 6.3e-206 721.5 695 58.8
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 6.3e-198 694.9 671 58.4
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 5.3e-197 691.8 667 58.6
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 1.2e-196 690.6 796 49.0
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 3.5e-196 689.1 694 54.0
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 7.7e-196 688.0 697 53.2
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.0e-195 687.6 697 53.2
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.3e-195 687.2 700 53.7
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.9e-194 683.3 705 56.3
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 1.2e-193 680.6 708 51.7
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 2.7e-193 679.5 676 54.3
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 3.6e-193 679.1 625 56.2
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 1.0e-192 677.6 691 52.7
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 3.0e-192 676.0 686 51.5
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 3.0e-192 676.0 756 49.9
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 5.2e-192 675.2 679 52.7
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 1.5e-191 673.7 665 53.5
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 4.4e-191 672.2 614 55.2
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 8.3e-190 667.9 653 55.4
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 5.4e-189 665.2 699 53.4
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 2.0e-188 663.3 657 53.0
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 7.7e-188 661.4 677 52.0
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 1.3e-187 660.6 669 56.7
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.7e-187 660.2 699 54.9
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 2.9e-187 659.4 677 52.9
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 2.5e-186 656.4 688 51.5
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 5.5e-186 655.2 677 51.0
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 1.6e-185 653.7 692 51.0
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.0e-184 651.0 671 56.6
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.4e-184 650.6 668 53.1
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 2.3e-184 649.8 717 49.7
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 1.2e-183 647.5 733 48.2
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 4.4e-183 645.6 731 48.3
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 1.7e-182 643.7 673 54.7
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.7e-182 643.7 748 47.9
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.8e-182 642.9 731 48.0
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.9e-182 642.1 738 48.1
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 8.3e-182 641.3 685 49.5
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 3.1e-181 639.4 645 52.6
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 7.0e-181 638.3 699 48.9
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.2e-181 637.9 627 54.1
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.2e-180 637.5 748 47.5
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 5.9e-180 635.2 748 48.3
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 2.3e-179 633.3 634 51.9
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 2.9e-179 632.9 688 50.7
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 4.3e-178 629.0 705 48.5
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 2.1e-177 626.7 692 49.9
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.1e-177 626.7 677 51.6
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 2.1e-177 626.7 657 53.7
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.4e-176 624.0 664 52.6
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 6.8e-176 621.7 652 51.5
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 3.4e-175 619.4 706 48.9
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 4.4e-175 619.0 690 49.4
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 4.9e-174 615.5 675 48.7
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 1.1e-173 614.4 686 48.4
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 1.2e-172 610.9 649 49.0
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 1.2e-172 610.9 684 48.2
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 1.6e-172 610.5 674 51.0
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 5.0e-171 605.5 677 47.9
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 1.5e-170 604.0 563 58.3
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 2.1e-169 600.1 680 48.7
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 3.6e-169 599.4 696 48.0
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 6.2e-169 598.6 629 52.8
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 6.2e-169 598.6 680 48.8
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.1e-168 596.3 655 48.4
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.5e-167 594.0 661 48.9
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.9e-165 587.0 683 48.0
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 1.9e-165 587.0 699 48.8
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 2.0e-164 583.6 585 56.8
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.1e-162 577.8 639 49.9
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 1.6e-161 573.9 694 46.1
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 2.8e-161 573.2 660 48.2
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 3.6e-161 572.8 616 50.2
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.1e-160 571.2 641 49.5
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.4e-160 570.9 657 46.7
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.5e-159 567.4 592 53.9
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 5.8e-159 565.5 685 46.7
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 7.5e-159 565.1 662 48.0
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 9.8e-159 564.7 630 49.4
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.6e-156 555.8 670 47.5
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 1.7e-155 553.9 658 45.0
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 2.8e-153 546.6 630 48.1
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 6.2e-153 545.4 691 44.9
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 8.9e-152 541.6 688 48.8
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 1.2e-151 541.2 662 46.2
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 3.8e-150 536.2 669 46.9
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.9e-149 533.9 686 44.6
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 7.3e-146 521.9 664 44.3
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 8.9e-144 515.0 659 44.0
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 3.4e-143 513.1 469 57.4
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 7.6e-143 511.9 486 53.5
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 1.2e-140 504.6 691 47.9
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 7.8e-140 501.9 704 42.5
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.3e-131 473.8 488 51.4
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 5.6e-130 469.2 416 60.8
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.4e-117 427.9 499 46.9
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 3.1e-112 410.2 739 36.5
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.1e-108 397.5 671 37.4
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.1e-108 397.5 676 36.7
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.0e-107 393.7 403 51.9
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.5e-106 390.6 678 36.1
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 9.7e-106 388.7 642 37.9
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 6.9e-104 382.5 664 36.6
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 1.2e-100 371.7 686 34.5
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 3.3e-98 363.6 739 35.6
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.5e-95 353.2 661 35.2
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 2.2e-94 350.9 759 34.9
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 8.5e-94 349.0 635 36.7
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 9.4e-93 345.5 661 38.6
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 2.5e-85 320.9 801 31.2
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 1.2e-84 318.5 540 40.6
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 3.6e-84 317.0 506 38.5
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 1.3e-81 308.5 643 36.7
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.2e-76 292.0 395 41.0
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.0e-74 284.6 501 36.3
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 2.4e-72 277.7 320 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 1.6e-71 275.0 748 30.5
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 5.0e-70 270.0 224 59.4
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.2e-68 265.4 502 34.9
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.8e-67 261.5 218 61.0
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 7.0e-56 223.0 334 38.9
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.7e-31 141.4 108 66.7
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 7.8e-31 139.8 69 94.2
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.6e-28 132.1 282 32.6
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 4.2e-24 117.5 92 59.8
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 7.8e-23 113.2 187 36.4
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.0e-19 100.9 66 71.2
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 9.9e-18 96.3 111 46.8
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 3.7e-12 77.8 150 35.3
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 8.1e-12 76.6 158 34.2
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.8e-09 67.8 60 53.3
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 6.4e-09 67.0 49 67.3
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 5.5e-08 63.9 52 59.6
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 9.3e-08 63.2 54 51.9
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 4.6e-07 60.8 54 55.6


User provided reference genes

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