Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1449.5 758 100.0
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1346.6 757 91.8
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 0.0e+00 1340.5 781 89.5
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 0.0e+00 1333.5 781 88.9
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 0.0e+00 1307.0 756 90.1
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 0.0e+00 1303.1 755 89.7
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 0.0e+00 1276.5 754 87.5
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1270.8 755 86.9
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 0.0e+00 1264.2 755 86.4
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1246.5 731 89.3
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1242.6 764 84.7
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 0.0e+00 1238.8 773 83.8
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 0.0e+00 1236.1 754 85.0
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1235.3 729 88.8
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 0.0e+00 1231.9 755 84.2
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 0.0e+00 1226.5 772 83.4
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1200.7 756 84.0
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 0.0e+00 1179.5 755 80.7
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 0.0e+00 1144.4 756 78.0
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.2e-282 976.5 777 65.5
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 7.2e-280 967.2 761 64.9
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 3.6e-271 938.3 761 64.5
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 8.0e-271 937.2 760 64.9
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 1.5e-269 932.9 761 63.9
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.4e-267 926.4 761 62.8
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 1.8e-267 926.0 760 63.6
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 7.0e-267 924.1 767 62.8
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.6e-263 912.9 769 62.3
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 4.1e-259 898.3 764 63.0
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 5.9e-258 894.4 760 62.1
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 3.9e-257 891.7 757 61.3
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 9.5e-256 887.1 764 61.8
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.1e-255 884.4 758 61.6
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.4e-254 883.2 775 60.5
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.8e-254 882.9 757 61.2
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 4.0e-254 881.7 759 61.8
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 8.9e-254 880.6 758 61.2
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 2.2e-252 875.9 757 60.6
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.2e-250 870.2 760 60.5
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 2.0e-250 869.4 760 60.8
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 7.8e-250 867.5 749 61.4
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 8.6e-249 864.0 764 60.1
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 7.3e-248 860.9 765 60.1
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 1.2e-247 860.1 763 60.0
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.8e-247 859.0 758 59.8
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 3.6e-247 858.6 761 59.9
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.4e-246 856.7 770 59.0
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 1.4e-246 856.7 805 57.8
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 2.0e-245 852.8 731 61.8
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.7e-244 849.7 763 58.6
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 4.6e-242 841.6 768 58.6
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 2.3e-241 839.3 717 61.4
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 4.3e-240 835.1 760 58.2
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 7.3e-240 834.3 762 58.3
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 2.8e-239 832.4 732 60.1
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 8.9e-238 827.4 780 57.1
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 1.2e-237 827.0 762 57.5
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 5.8e-237 824.7 765 57.4
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 9.9e-237 823.9 736 58.7
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 9.9e-237 823.9 764 57.2
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 3.7e-236 822.0 786 57.0
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.1e-235 820.5 758 56.7
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 2.4e-235 819.3 764 57.7
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 3.2e-235 818.9 759 58.5
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 4.1e-235 818.5 765 56.7
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 5.4e-235 818.1 758 59.2
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 9.2e-235 817.4 761 56.9
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 7.3e-232 807.7 773 55.9
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 2.6e-229 799.3 758 55.5
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 1.9e-227 793.1 764 55.5
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 1.9e-227 793.1 764 55.8
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 2.4e-227 792.7 764 54.7
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 9.3e-227 790.8 680 60.7
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 1.9e-224 783.1 774 55.8
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 2.9e-220 769.2 764 54.7
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 4.9e-220 768.5 786 53.6
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 4.6e-218 761.9 766 55.4
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 1.3e-212 743.8 797 50.8
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 2.2e-212 743.0 577 67.4
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 9.3e-211 737.6 577 65.7
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 1.2e-210 737.3 769 52.4
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 1.3e-209 733.8 736 54.5
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 2.4e-206 723.0 740 55.0
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 2.9e-204 716.1 761 50.7
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.1e-200 704.1 730 54.4
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 9.6e-200 701.0 762 50.3
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 1.5e-197 693.7 566 64.1
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 4.2e-195 685.6 757 52.0
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.6e-194 683.7 758 48.7
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 1.3e-193 680.6 565 63.2
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 9.7e-192 674.5 566 62.7
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 2.0e-189 666.8 565 62.5
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.7e-188 663.7 761 49.5
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.0e-188 662.1 765 47.8
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 3.6e-186 656.0 579 57.9
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 2.3e-185 653.3 575 60.0
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 6.7e-185 651.7 576 59.9
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 2.4e-182 643.3 629 54.2
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 4.2e-179 632.5 761 47.3
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 2.6e-176 623.2 660 51.5
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 1.3e-175 620.9 519 64.2
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 8.2e-175 618.2 747 48.5
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 1.0e-172 611.3 531 60.3
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 7.2e-163 578.6 459 65.1
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.3e-161 573.5 529 59.2
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 1.6e-157 560.8 764 43.2
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.0e-153 548.1 505 57.0
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 1.8e-150 537.3 617 49.4
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.3e-145 520.4 531 52.4
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 8.9e-145 518.5 776 39.0
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 4.7e-122 443.0 561 47.4
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 5.8e-120 436.0 440 52.7
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 3.0e-116 423.7 335 64.2
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.2e-114 418.3 485 48.2
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 9.6e-107 392.1 328 62.5
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 6.9e-105 386.0 286 68.2
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 8.4e-103 379.0 381 54.9
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 5.4e-102 376.3 811 31.1
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 4.8e-98 363.2 287 65.2
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 1.0e-92 345.5 281 63.7
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 6.7e-92 342.8 747 30.7
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.5e-91 341.7 482 43.6
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 3.8e-87 327.0 318 58.8
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 6.5e-79 299.7 757 28.8
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.0e-76 292.4 230 64.8
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 2.8e-66 257.7 177 71.2
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.2e-64 252.3 345 40.0
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 3.8e-63 247.3 216 59.7
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 1.1e-59 235.7 817 25.7
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 2.8e-50 204.5 182 56.0
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 3.7e-50 204.1 217 50.2
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 4.4e-43 180.6 134 70.1
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 1.3e-42 179.1 241 42.3
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 6.5e-39 166.8 196 44.9
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.0e-36 159.5 237 43.0
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.8e-36 158.7 419 31.3
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.8e-36 156.8 419 31.3
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 6.8e-28 130.2 106 66.0
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 3.3e-22 111.3 85 67.1
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 6.2e-21 107.1 85 62.4
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 6.2e-21 107.1 135 43.7
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 6.8e-20 103.6 104 55.8
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.0e-16 92.0 76 60.5
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.2e-13 82.8 215 30.7
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.1e-13 82.0 69 58.0
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 8.1e-13 80.1 112 42.9
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-11 75.5 87 40.2
PRCOL_00004220 Prasinoderma coloniale HOM05D004734 ORTHO05D006019 1.2e-08 66.2 450 21.1
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 1.9e-06 58.9 80 42.5
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 5.6e-06 57.4 72 41.7


User provided reference genes

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