Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 3.0e-75 285.4 178 100.0
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-64 250.4 178 88.8
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-64 250.4 178 88.2
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-64 250.0 177 88.1
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 1.4e-64 250.0 178 88.2
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 3.9e-59 231.9 192 80.7
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 5.1e-59 231.5 190 81.1
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 6.6e-59 231.1 183 83.6
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.5e-58 229.9 182 84.6
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-57 226.1 197 77.2
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 2.1e-57 226.1 197 77.2
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-56 223.8 193 77.7
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-56 223.8 193 79.3
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 2.6e-55 219.2 203 75.4
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-54 215.7 189 77.8
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.8e-54 215.3 184 80.4
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 6.4e-54 214.5 179 83.2
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 6.4e-54 214.5 206 74.3
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 4.2e-53 211.8 210 71.4
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-52 209.5 200 70.5
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 6.0e-52 208.0 180 80.0
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 1.6e-49 199.9 202 72.3
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 3.4e-47 192.2 190 74.2
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.2e-44 183.7 172 73.8
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.5e-42 176.8 182 59.9
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 9.0e-40 167.5 187 65.8
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.0e-39 166.4 179 69.8
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.0e-39 166.4 183 63.4
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 2.5e-37 159.5 174 69.5
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 4.6e-36 155.2 184 66.8
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 7.9e-36 154.5 194 55.2
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 2.3e-35 152.9 186 64.5
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 3.0e-35 152.5 178 48.9
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 3.0e-35 152.5 175 58.3
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.9e-35 152.1 179 55.3
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 8.7e-35 151.0 174 65.5
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.9e-34 149.8 184 52.2
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.9e-34 149.8 192 45.8
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 3.3e-34 149.1 181 54.7
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 3.3e-34 149.1 191 55.0
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 4.3e-34 148.7 189 45.5
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 5.7e-34 148.3 175 68.0
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 7.4e-34 147.9 207 52.7
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 7.4e-34 147.9 183 54.6
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 9.7e-34 147.5 178 47.2
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 9.7e-34 147.5 178 47.2
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 9.7e-34 147.5 185 47.0
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 2.2e-33 146.4 185 63.2
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 2.2e-33 146.4 191 45.0
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 2.8e-33 146.0 180 51.1
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 4.8e-33 145.2 187 52.9
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 6.3e-33 144.8 200 56.5
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 6.3e-33 144.8 200 55.0
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 8.2e-33 144.4 191 51.3
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.1e-32 144.1 193 50.8
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.8e-32 143.3 190 61.1
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 3.1e-32 142.5 202 52.5
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 5.3e-32 141.7 195 55.4
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 6.9e-32 141.4 206 50.0
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 6.9e-32 141.4 206 50.0
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 6.9e-32 141.4 194 58.8
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 6.9e-32 141.4 188 48.9
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 6.9e-32 141.4 193 58.0
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 6.9e-32 141.4 182 59.3
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 9.0e-32 141.0 191 50.3
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.2e-31 140.6 187 51.3
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.5e-31 140.2 193 44.6
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 3.4e-31 139.0 190 49.5
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 3.4e-31 139.0 188 56.4
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 3.4e-31 139.0 188 56.4
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 4.5e-31 138.7 175 55.4
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.5e-31 138.7 197 53.8
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 5.9e-31 138.3 177 52.0
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 5.9e-31 138.3 199 53.3
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 7.6e-31 137.9 173 56.6
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 7.6e-31 137.9 182 59.9
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 7.6e-31 137.9 200 52.5
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-30 137.5 175 57.7
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.0e-30 137.5 192 59.4
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 1.0e-30 137.5 190 61.1
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.9e-30 136.0 210 54.3
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 2.9e-30 136.0 190 58.4
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.8e-30 135.6 192 57.8
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 5.0e-30 135.2 199 58.3
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 8.5e-30 134.4 184 50.0
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.1e-29 134.0 214 53.3
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.4e-29 133.7 179 58.1
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.9e-29 133.3 177 51.4
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 3.2e-29 132.5 178 44.4
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 3.2e-29 132.5 178 44.4
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 3.2e-29 132.5 178 44.4
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 3.2e-29 132.5 185 57.8
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 4.2e-29 132.1 129 58.1
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 5.5e-29 131.7 200 46.5
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 5.5e-29 131.7 196 54.6
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 5.5e-29 131.7 177 50.8
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 7.2e-29 131.3 175 55.4
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 7.2e-29 131.3 182 53.8
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 7.2e-29 131.3 192 50.0
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 9.3e-29 131.0 205 44.9
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 9.3e-29 131.0 218 48.6
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.2e-28 130.6 191 45.5
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.7e-28 129.4 186 43.5
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 3.6e-28 129.0 205 47.3
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.6e-28 129.0 181 43.1
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.6e-28 128.6 209 52.6
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 4.6e-28 128.6 196 40.8
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.8e-27 126.7 190 43.7
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 2.3e-27 126.3 218 47.7
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.0e-27 125.9 184 42.4
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.0e-27 125.9 194 51.0
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 3.0e-27 125.9 210 51.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 3.0e-27 125.9 198 48.5
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 3.9e-27 125.6 187 53.5
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 5.1e-27 125.2 208 48.6
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 5.1e-27 125.2 200 51.5
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 8.8e-27 124.4 240 45.4
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 8.8e-27 124.4 182 51.1
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 8.8e-27 124.4 196 39.8
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.5e-26 123.6 184 59.8
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.5e-26 123.6 202 55.0
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.5e-26 123.6 181 43.1
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.5e-26 123.6 137 70.8
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 3.3e-26 122.5 220 37.7
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 9.7e-26 120.9 188 44.1
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 9.7e-26 120.9 197 50.3
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 9.7e-26 120.9 181 42.0
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-25 120.6 131 50.4
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.7e-25 120.2 181 40.3
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 4.8e-25 118.6 141 48.9
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 4.8e-25 118.6 192 55.7
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 6.3e-25 118.2 204 46.6
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 6.3e-25 118.2 205 37.6
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 6.3e-25 118.2 147 44.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.1e-24 117.5 240 47.9
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 1.4e-24 117.1 180 58.3
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.8e-24 116.7 230 34.8
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.8e-24 116.7 216 36.6
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 3.1e-24 115.9 192 57.3
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 5.3e-24 115.2 197 53.3
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 5.3e-24 115.2 197 53.3
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.2e-23 114.0 153 63.4
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.2e-23 114.0 127 61.4
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.9e-23 111.7 229 47.6
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.3e-22 110.5 211 36.5
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.7e-22 110.2 152 41.4
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 6.5e-22 108.2 146 61.6
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 6.5e-22 108.2 146 61.6
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 6.5e-22 108.2 231 41.6
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 8.5e-22 107.8 147 61.2
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 8.5e-22 107.8 147 61.2
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 3.2e-21 105.9 236 36.0
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 6.1e-20 101.7 180 42.2
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 7.9e-20 101.3 177 42.4
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.4e-19 100.5 166 42.2
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 2.8e-17 92.8 132 61.4
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.4e-16 90.5 183 32.2
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.4e-16 90.5 176 37.5
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 1.8e-16 90.1 113 47.8
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 3.1e-16 89.4 205 34.6
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 7.7e-15 84.7 219 28.8
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.1e-13 80.9 99 76.8
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 5.5e-13 78.6 217 33.2
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 7.2e-13 78.2 215 29.8
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.1e-12 76.6 110 48.2
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.0e-11 74.3 195 43.1
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.8e-11 73.6 195 42.6
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.0e-11 72.8 184 42.4
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.9e-11 72.4 213 28.6
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 8.8e-11 71.2 34 85.3
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 5.7e-10 68.6 91 41.8
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.2e-07 60.8 177 28.2
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.5e-07 59.3 131 28.2
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 3.5e-07 59.3 42 59.5
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 4.5e-07 58.9 42 57.1
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.2e-06 56.6 144 30.6
Mapoly0029s0076 Marchantia polymorpha HOM05D013579 ORTHO05D015305 2.9e-06 56.2 44 52.3
Pp3c5_5250 Physcomitrium patens HOM05D013579 ORTHO05D015305 5.0e-06 55.5 45 55.6
Pp3c14_14200 Physcomitrium patens HOM05D022619 ORTHO05D026045 6.5e-06 55.1 46 50.0
Pp3c6_24870 Physcomitrium patens HOM05D013579 ORTHO05D015305 6.5e-06 55.1 41 53.7


User provided reference genes

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