Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 2.0e-158 562.4 279 100.0
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 7.0e-140 500.7 281 87.5
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 7.0e-140 500.7 281 87.5
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 7.0e-140 500.7 281 87.5
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 7.0e-140 500.7 281 87.5
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 9.2e-140 500.4 281 87.9
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 3.5e-139 498.4 281 87.2
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 1.7e-138 496.1 282 88.3
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 5.6e-137 491.1 282 84.8
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 1.8e-135 486.1 282 86.5
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 5.4e-132 474.6 267 88.0
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.2e-128 463.4 277 82.3
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 7.3e-121 437.6 276 77.2
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 4.5e-110 401.7 279 70.6
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 7.6e-110 401.0 219 90.4
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 3.2e-108 395.6 281 68.0
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 8.1e-104 380.9 242 76.9
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.4e-95 353.6 221 78.7
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 3.3e-89 332.4 271 59.0
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 4.3e-89 332.0 279 60.9
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 5.7e-89 331.6 278 59.0
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 9.6e-89 330.9 254 63.0
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 2.8e-88 329.3 256 61.3
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 8.2e-88 327.8 278 59.4
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.8e-87 326.6 276 58.0
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 4.1e-87 325.5 279 57.3
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 1.2e-86 323.9 287 56.8
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 1.2e-86 323.9 267 59.2
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 2.0e-86 323.2 282 58.2
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 3.4e-86 322.4 269 58.7
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 3.4e-86 322.4 263 59.7
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 4.5e-86 322.0 273 58.2
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 7.6e-86 321.2 271 58.7
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 7.6e-86 321.2 278 57.6
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 1.0e-85 320.9 271 57.9
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.3e-85 320.5 271 57.2
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.7e-85 320.1 276 58.0
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.2e-85 319.7 259 60.2
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.9e-85 319.3 269 57.6
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 5.0e-85 318.5 266 59.0
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 6.5e-85 318.2 274 57.3
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.1e-84 317.4 270 57.4
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.4e-84 317.0 264 60.2
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 1.9e-84 316.6 266 58.3
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 2.5e-84 316.2 275 57.1
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.5e-84 316.2 292 56.2
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 5.5e-84 315.1 292 55.8
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 9.3e-84 314.3 284 54.9
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 1.6e-83 313.5 260 57.3
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.6e-83 313.5 282 55.7
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.6e-83 312.4 269 56.9
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.6e-83 312.4 272 57.0
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 4.6e-83 312.0 248 60.9
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 4.6e-83 312.0 272 57.0
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 4.6e-83 312.0 268 59.0
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 7.9e-83 311.2 260 56.9
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 1.0e-82 310.8 270 57.8
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 1.3e-82 310.5 263 58.2
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 2.3e-82 309.7 240 61.7
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 3.0e-82 309.3 263 57.4
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 3.0e-82 309.3 260 58.8
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 3.9e-82 308.9 274 56.2
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 5.1e-82 308.5 279 54.8
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 8.7e-82 307.8 283 55.1
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.1e-81 307.4 239 61.5
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.5e-81 307.0 273 56.8
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.9e-81 306.6 264 58.3
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 2.5e-81 306.2 256 59.0
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 3.3e-81 305.8 268 56.7
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 4.3e-81 305.4 255 56.1
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 9.7e-81 304.3 264 55.7
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.3e-80 303.9 246 61.0
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 1.6e-80 303.5 251 58.6
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 2.8e-80 302.8 255 57.6
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.8e-80 302.8 266 55.6
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.8e-80 302.8 266 55.6
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 2.8e-80 302.8 251 59.0
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 3.7e-80 302.4 253 58.1
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 3.7e-80 302.4 253 56.9
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 3.7e-80 302.4 255 57.6
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 4.8e-80 302.0 276 56.5
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 8.2e-80 301.2 288 55.6
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 8.2e-80 301.2 287 53.3
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.4e-79 300.4 258 56.6
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.4e-79 300.4 269 55.8
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 2.4e-79 299.7 264 55.7
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 5.3e-79 298.5 259 56.0
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 2.6e-78 296.2 276 55.4
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 2.6e-78 296.2 255 57.3
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 2.9e-77 292.7 255 56.1
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 2.5e-76 289.7 274 54.4
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 5.5e-76 288.5 267 55.4
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.6e-75 287.0 243 58.4
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 7.9e-75 284.6 275 53.5
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.7e-74 281.6 269 53.2
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 6.7e-74 281.6 243 57.6
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 1.8e-71 273.5 278 48.6
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 2.4e-71 273.1 257 50.6
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 5.3e-71 271.9 255 52.9
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 1.2e-70 270.8 270 51.9
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 1.0e-69 267.7 262 52.7
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 2.9e-69 266.2 218 58.7
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 6.5e-69 265.0 345 41.7
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 7.2e-68 261.5 277 46.6
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 9.4e-68 261.2 239 54.8
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.2e-67 260.8 257 49.8
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 6.1e-67 258.5 224 55.4
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.0e-66 257.7 215 57.7
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.2e-66 255.4 207 59.9
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 6.3e-64 248.4 243 52.7
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 3.1e-63 246.1 215 56.3
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 9.1e-63 244.6 279 44.1
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 1.6e-62 243.8 219 54.3
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 8.0e-59 231.5 204 55.4
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 4.8e-56 222.2 193 55.4
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 1.8e-55 220.3 251 47.0
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 9.1e-55 218.0 283 43.5
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 6.1e-51 205.3 219 45.2
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 8.8e-50 201.4 290 40.3
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 8.3e-48 194.9 273 41.8
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.3e-45 187.6 148 62.8
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 3.2e-44 183.0 226 43.8
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 1.2e-43 181.0 240 40.8
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 4.3e-36 156.0 189 45.5
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 3.7e-32 142.9 293 35.8
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 8.6e-29 131.7 116 56.0
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 1.1e-26 124.8 215 33.5
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 5.2e-26 122.5 125 44.8
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 2.0e-22 110.5 167 40.1
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 9.5e-20 101.7 115 48.7
CARHR217150 Cardamine hirsuta HOM05D005541 ORTHO05D006875 2.6e-17 93.6 57 80.7
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 3.0e-13 80.1 66 56.1
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 6.6e-13 79.0 150 29.3
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 3.3e-12 76.6 54 59.3
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 3.6e-11 73.2 58 55.2
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 6.2e-11 72.4 111 39.6
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 5.2e-10 69.3 43 65.1
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 3.5e-06 56.6 49 57.1


User provided reference genes

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