Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03928 Brassica carinata HOM05D006709 ORTHO05D008329 4.4e-49 197.6 97 100.0
BcaC01g05832 Brassica carinata HOM05D006709 ORTHO05D008329 5.4e-47 190.7 97 96.9
C03p21970 Brassica napus HOM05D006709 ORTHO05D008329 5.4e-47 190.7 97 96.9
BolC3t14580H Brassica oleracea HOM05D006709 ORTHO05D008329 5.4e-47 190.7 97 96.9
BraA03t11140Z Brassica rapa HOM05D006709 ORTHO05D008329 5.4e-47 190.7 97 96.9
A03p18800 Brassica napus HOM05D006709 ORTHO05D008329 1.2e-46 189.5 97 95.9
CARHR127610 Cardamine hirsuta HOM05D006709 ORTHO05D008329 1.5e-44 182.6 97 89.7
BcaB06g28702 Brassica carinata HOM05D006709 ORTHO05D008329 4.7e-43 177.6 98 90.8
C04p63090 Brassica napus HOM05D006709 ORTHO05D008329 6.2e-43 177.2 98 89.8
Thhalv10017474m.g Eutrema salsugineum HOM05D006709 ORTHO05D008329 8.1e-43 176.8 97 87.6
A04p25850 Brassica napus HOM05D006709 ORTHO05D008329 1.4e-42 176.0 98 88.8
BraA04t18087Z Brassica rapa HOM05D006709 ORTHO05D008329 1.4e-42 176.0 98 88.8
BolC4t27784H Brassica oleracea HOM05D006709 ORTHO05D008329 4.0e-42 174.5 98 88.8
AL4G29260 Arabidopsis lyrata HOM05D006709 ORTHO05D008329 5.2e-42 174.1 97 84.5
BcaC02g07804 Brassica carinata HOM05D006709 ORTHO05D008329 9.0e-42 173.3 98 87.8
Carub.0004s1522 Capsella rubella HOM05D006709 ORTHO05D008329 2.0e-41 172.2 98 84.7
Aa31LG9G13520 Aethionema arabicum HOM05D006709 ORTHO05D008329 3.4e-41 171.4 97 81.4
AT2G33585 Arabidopsis thaliana HOM05D006709 ORTHO05D008329 2.9e-40 168.3 97 81.4
Cpa.g.sc26.6 Carica papaya HOM05D006709 ORTHO05D008329 3.9e-37 157.9 97 75.3
Prupe.1G298300 Prunus persica HOM05D006709 ORTHO05D008329 1.1e-36 156.4 97 75.3
Atru.chr13.44 Acer truncatum HOM05D006709 ORTHO05D008329 3.3e-36 154.8 92 77.2
Ciclev10002952m.g Citrus clementina HOM05D006709 ORTHO05D008329 4.3e-36 154.5 97 74.2
MELO3C016084.2 Cucumis melo HOM05D006709 ORTHO05D008329 5.6e-36 154.1 96 74.0
ClCG07G009870 Citrullus lanatus HOM05D006709 ORTHO05D008329 7.3e-36 153.7 97 73.2
Sp4g15940 Schrenkiella parvula HOM05D006709 ORTHO05D008329 7.3e-36 153.7 83 88.0
Actinidia17082 Actinidia chinensis HOM05D006709 ORTHO05D008329 9.6e-36 153.3 98 76.5
Manes.18G001600 Manihot esculenta HOM05D006709 ORTHO05D008329 9.6e-36 153.3 92 75.0
QL02p015873 Quercus lobata HOM05D006709 ORTHO05D008329 9.6e-36 153.3 93 74.2
Actinidia15528 Actinidia chinensis HOM05D006709 ORTHO05D008329 6.2e-35 150.6 98 75.5
vmacro21761 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 6.2e-35 150.6 97 74.2
GSVIVG01013436001 Vitis vinifera HOM05D006709 ORTHO05D008329 6.2e-35 150.6 98 73.5
Dinv05492 Davidia involucrata HOM05D006709 ORTHO05D008329 1.4e-34 149.4 98 74.5
MD06G1003100 Malus domestica HOM05D006709 ORTHO05D008329 1.8e-34 149.1 94 74.5
CSS0027441 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 2.4e-34 148.7 96 75.0
Potri.005G257100 Populus trichocarpa HOM05D006709 ORTHO05D008329 2.4e-34 148.7 97 68.0
Sed0015665 Sechium edule HOM05D006709 ORTHO05D008329 2.4e-34 148.7 88 77.3
Thecc.08G099000 Theobroma cacao HOM05D006709 ORTHO05D008329 2.4e-34 148.7 96 70.8
CSS0014821 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 4.0e-34 147.9 96 75.0
RcHm_v2.0_Chr7g0216881 Rosa chinensis HOM05D006709 ORTHO05D008329 5.3e-34 147.5 101 68.3
Haze_22867 Corylus avellana HOM05D006709 ORTHO05D008329 9.0e-34 146.7 96 70.8
CAN.G1330.15 Capsicum annuum HOM05D006709 ORTHO05D008329 1.2e-33 146.4 98 71.4
FvH4_5g26200 Fragaria vesca HOM05D006709 ORTHO05D008329 1.2e-33 146.4 101 66.3
FAN08G1650 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.2e-33 146.4 101 66.3
FAN13G1766 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.2e-33 146.4 101 66.3
FAN18G1826 Fragaria x ananassa HOM05D006709 ORTHO05D008329 2.6e-33 145.2 101 66.3
Duzib151G1059 Durio zibethinus HOM05D006709 ORTHO05D008329 3.4e-33 144.8 92 71.7
Psat5g008400 Pisum sativum HOM05D006709 ORTHO05D008329 3.4e-33 144.8 93 68.8
Gohir.A09G212700 Gossypium hirsutum HOM05D006709 ORTHO05D008329 4.5e-33 144.4 91 71.4
Gohir.D09G206300 Gossypium hirsutum HOM05D006709 ORTHO05D008329 4.5e-33 144.4 91 71.4
Gorai.006G230200 Gossypium raimondii HOM05D006709 ORTHO05D008329 4.5e-33 144.4 91 71.4
Glyma.04G014200 Glycine max HOM05D006709 ORTHO05D008329 5.8e-33 144.1 92 72.8
Solyc04g082800.3 Solanum lycopersicum HOM05D006709 ORTHO05D008329 5.8e-33 144.1 98 69.4
Sopen04g036440 Solanum pennellii HOM05D006709 ORTHO05D008329 5.8e-33 144.1 98 69.4
TPR.G38103 Trifolium pratense HOM05D006709 ORTHO05D008329 7.6e-33 143.7 94 71.3
BcaC01g05833 Brassica carinata HOM05D006709 ORTHO05D008329 9.9e-33 143.3 89 84.3
Phvul.009G008700 Phaseolus vulgaris HOM05D006709 ORTHO05D008329 9.9e-33 143.3 91 73.6
arahy.Tifrunner.gnm1.ann1.6A59KD Arachis hypogaea HOM05D006709 ORTHO05D008329 1.3e-32 142.9 92 71.7
PGR031G3816 Punica granatum HOM05D006709 ORTHO05D008329 1.3e-32 142.9 98 69.4
Oeu035869.2 Olea europaea HOM05D006709 ORTHO05D008329 1.7e-32 142.5 92 73.9
Eucgr.F03607 Eucalyptus grandis HOM05D006709 ORTHO05D008329 2.2e-32 142.1 97 66.0
Hund05070 Selenicereus undatus HOM05D006709 ORTHO05D008329 2.9e-32 141.7 91 73.6
Medtr3g116150 Medicago truncatula HOM05D006709 ORTHO05D008329 3.8e-32 141.4 93 72.0
arahy.Tifrunner.gnm1.ann1.ZQQY3F Arachis hypogaea HOM05D006709 ORTHO05D008329 4.9e-32 141.0 92 70.7
Ca_15382_v3 Cicer arietinum L. HOM05D006709 ORTHO05D008329 4.9e-32 141.0 94 67.0
VMungo1309G2593 Vigna mungo HOM05D006709 ORTHO05D008329 4.9e-32 141.0 91 71.4
Ah.11g042070 Amaranthus hybridus HOM05D006709 ORTHO05D008329 6.4e-32 140.6 92 71.7
Nitab4.5_0007096g0020 Nicotiana tabacum HOM05D006709 ORTHO05D008329 1.1e-31 139.8 98 67.3
Lalb_Chr03g0035821 Lupinus albus HOM05D006709 ORTHO05D008329 1.4e-31 139.4 92 69.6
CANSAT78G0412 Cannabis sativa HOM05D006709 ORTHO05D008329 1.9e-31 139.0 96 65.6
TWI56G0059 Tripterygium wilfordii HOM05D006709 ORTHO05D008329 1.9e-31 139.0 99 67.7
MBI04_g31214_MAGBIO Magnolia biondii HOM05D006709 ORTHO05D008329 3.2e-31 138.3 98 67.3
Peaxi162Scf00385g00310 Petunia axillaris HOM05D006709 ORTHO05D008329 4.2e-31 137.9 98 68.4
Lj1g0007500 Lotus japonicus HOM05D006709 ORTHO05D008329 5.4e-31 137.5 97 68.0
Rhsim06G0002600 Rhododendron simsii HOM05D006709 ORTHO05D008329 5.4e-31 137.5 103 65.0
Duzib212G0839 Durio zibethinus HOM05D006709 ORTHO05D008329 7.1e-31 137.1 93 67.7
ECA233G3448 Erigeron canadensis HOM05D006709 ORTHO05D008329 9.3e-31 136.7 95 68.4
Lsat_1_v5_gn_9_48241 Lactuca sativa HOM05D006709 ORTHO05D008329 1.6e-30 136.0 91 71.4
SalBow7G4607 Salvia bowleyana HOM05D006709 ORTHO05D008329 1.6e-30 136.0 89 71.9
Hma1.2p1_0489F.1_g164140 Hydrangea macrophylla HOM05D006709 ORTHO05D008329 2.1e-30 135.6 95 68.4
EL10Ac1g01866 Beta vulgaris HOM05D006709 ORTHO05D008329 2.7e-30 135.2 92 66.3
Lj4A4T20 Lonicera japonica HOM05D006709 ORTHO05D008329 2.7e-30 135.2 91 72.5
PGSC0003DMG400009925 Solanum tuberosum HOM05D006709 ORTHO05D008329 2.7e-30 135.2 95 67.4
Lalb_Chr04g0257801 Lupinus albus HOM05D006709 ORTHO05D008329 3.5e-30 134.8 90 68.9
ATR0605G117 Amborella trichopoda HOM05D006709 ORTHO05D008329 4.6e-30 134.4 93 68.8
Sc15g0004050 Simmondsia chinensis HOM05D006709 ORTHO05D008329 7.9e-30 133.7 94 64.9
Glyma.06G014200 Glycine max HOM05D006709 ORTHO05D008329 1.3e-29 132.9 99 65.7
Lsat_1_v5_gn_8_26041 Lactuca sativa HOM05D006709 ORTHO05D008329 2.3e-29 132.1 98 66.3
CDE05G2376 Ceratophyllum demersum HOM05D006709 ORTHO05D008329 3.9e-29 131.3 93 65.6
PSO017G0586 Papaver somniferum HOM05D006709 ORTHO05D008329 5.1e-29 131.0 97 63.9
Aqoxy5G00959 Aquilegia oxysepala HOM05D006709 ORTHO05D008329 6.7e-29 130.6 80 73.8
Migut.C00352 Erythranthe guttata HOM05D006709 ORTHO05D008329 6.7e-29 130.6 87 69.0
HanXRQChr12g0367591 Helianthus annuus HOM05D006709 ORTHO05D008329 1.5e-28 129.4 93 63.4
Nn5g31057 Nelumbo nucifera HOM05D006709 ORTHO05D008329 1.9e-28 129.0 125 54.4
HPP92_015749 Vanilla planifolia HOM05D006709 ORTHO05D008329 1.9e-28 129.0 97 64.9
unitig_37.g13048 Utricularia gibba HOM05D006709 ORTHO05D008329 7.4e-28 127.1 91 64.8
Sabra05G0199000 Salix brachista HOM05D006709 ORTHO05D008329 9.6e-28 126.7 80 70.0
COL.COLO4_12285 Corchorus olitorius HOM05D006709 ORTHO05D008329 2.8e-27 125.2 84 67.9
SEGI_16420 Sequoiadendron giganteum HOM05D006709 ORTHO05D008329 2.8e-27 125.2 91 60.4
Os08g0512900 Oryza sativa ssp. japonica HOM05D006709 ORTHO05D008329 4.8e-27 124.4 85 70.6
Oeu035760.1 Olea europaea HOM05D006709 ORTHO05D008329 8.1e-27 123.6 104 59.6
TAR628G1717 Trochodendron aralioides HOM05D006709 ORTHO05D008329 1.1e-26 123.2 81 71.6
Cc10_g00210 Coffea canephora HOM05D006709 ORTHO05D008329 1.5e-25 119.4 82 70.7
Zm00001eb199960 Zea mays HOM05D006709 ORTHO05D008329 4.9e-24 114.4 80 70.0
CiPaw.07G132800 Carya illinoinensis HOM05D006709 ORTHO05D008329 2.4e-23 112.1 78 70.5
FAN04G1417 Fragaria x ananassa HOM05D006709 ORTHO05D008329 3.5e-22 108.2 104 55.8
MSTRG.1007 Avicennia marina HOM05D006709 ORTHO05D008329 8.7e-21 103.6 80 62.5
CsaV3_4G008460 Cucumis sativus L. HOM05D006709 ORTHO05D008329 1.5e-20 102.8 62 75.8
Manes.05G128900 Manihot esculenta HOM05D006709 ORTHO05D008329 2.1e-19 99.0 71 63.4
Mapoly0015s0105 Marchantia polymorpha HOM05D006709 ORTHO05D008329 4.0e-18 94.7 79 55.7
AagrBONN_evm.TU.Sc2ySwM_344.3753 Anthoceros agrestis HOM05D006709 ORTHO05D008329 8.4e-16 87.0 79 53.2
DCAR_016802 Daucus carota HOM05D006709 ORTHO05D008329 1.1e-15 86.7 86 47.7
vmacro04272 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 2.3e-13 79.0 112 44.6
Pp3c1_9780 Physcomitrium patens HOM05D006709 ORTHO05D008329 1.5e-12 76.3 84 50.0
SHI07946 Sapria himalayana HOM05D006709 ORTHO05D008329 9.7e-12 73.6 50 66.0
DCAR_023021 Daucus carota HOM05D006709 ORTHO05D008329 1.8e-10 69.3 74 50.0
SalBow1G7713 Salvia bowleyana HOM05D006709 ORTHO05D008329 3.4e-09 65.1 47 61.7
SalBow8G3647 Salvia bowleyana HOM05D006709 ORTHO05D008329 2.9e-08 62.0 54 51.9
CBR_g27877 Chara braunii HOM05D006709 ORTHO05D008329 2.5e-07 58.9 53 50.9
A05p11940 Brassica napus HOM05D006709 ORTHO05D097272 3.6e-06 55.1 30 83.3


User provided reference genes

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