Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 2.4e-59 231.9 109 100.0
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 2.4e-59 231.9 109 100.0
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 2.4e-59 231.9 109 100.0
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 2.4e-59 231.9 109 100.0
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 2.4e-59 231.9 109 100.0
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 2.2e-57 225.3 109 95.4
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 3.8e-57 224.6 109 95.4
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 7.2e-56 220.3 109 97.2
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 1.4e-54 216.1 109 93.6
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 1.8e-54 215.7 109 93.6
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 1.8e-54 215.7 109 93.6
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 2.3e-54 215.3 109 93.6
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 2.3e-54 215.3 109 93.6
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 3.0e-54 214.9 109 92.7
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 1.1e-53 213.0 107 90.7
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.3e-52 209.5 109 90.8
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 4.5e-50 201.1 109 86.2
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 6.5e-49 197.2 97 96.9
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 3.6e-47 191.4 108 83.3
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.7e-44 181.4 110 75.5
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.7e-44 181.4 110 75.5
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 6.5e-33 144.1 117 61.5
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 6.1e-31 137.5 120 57.5
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 6.1e-31 137.5 115 61.7
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.4e-30 136.3 115 61.7
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 1.8e-30 136.0 106 65.1
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 5.2e-30 134.4 122 55.7
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 1.2e-29 133.3 114 57.0
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.5e-29 132.9 110 56.4
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 2.0e-29 132.5 100 66.0
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 2.0e-29 132.5 110 56.4
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 3.4e-29 131.7 119 55.5
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 4.4e-29 131.3 115 57.4
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 4.4e-29 131.3 110 55.5
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 4.4e-29 131.3 110 55.5
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 4.4e-29 131.3 116 57.8
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 7.5e-29 130.6 110 55.5
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 9.8e-29 130.2 110 57.3
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 1.3e-28 129.8 110 54.5
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.7e-28 129.4 118 56.8
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 2.2e-28 129.0 113 57.5
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 2.8e-28 128.6 110 55.5
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 3.7e-28 128.3 120 53.3
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 6.3e-28 127.5 110 59.1
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 8.3e-28 127.1 119 55.5
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 8.3e-28 127.1 115 55.7
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 1.1e-27 126.7 121 53.7
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 1.4e-27 126.3 111 55.9
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.4e-27 126.3 115 54.8
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 1.4e-27 126.3 111 56.8
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.8e-27 125.9 107 59.8
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 1.8e-27 125.9 121 57.9
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 2.4e-27 125.6 112 57.1
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 5.4e-27 124.4 118 54.2
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 5.4e-27 124.4 124 54.0
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 7.0e-27 124.0 115 55.7
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 7.0e-27 124.0 116 57.8
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 9.1e-27 123.6 119 57.1
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 1.2e-26 123.2 121 56.2
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 1.2e-26 123.2 107 55.1
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.2e-26 123.2 113 52.2
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 1.2e-26 123.2 113 52.2
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 2.0e-26 122.5 116 54.3
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 2.0e-26 122.5 110 57.3
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 2.0e-26 122.5 120 53.3
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 2.0e-26 122.5 116 58.6
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 2.7e-26 122.1 122 51.6
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 3.5e-26 121.7 115 54.8
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 3.5e-26 121.7 114 54.4
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 3.5e-26 121.7 115 56.5
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 4.5e-26 121.3 115 54.8
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 7.7e-26 120.6 107 54.2
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 7.7e-26 120.6 107 54.2
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 7.7e-26 120.6 116 54.3
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 7.7e-26 120.6 123 50.4
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 1.0e-25 120.2 115 52.2
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 1.7e-25 119.4 118 53.4
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 1.7e-25 119.4 116 53.4
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 2.3e-25 119.0 117 51.3
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 2.3e-25 119.0 125 50.4
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 5.0e-25 117.9 115 53.0
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 5.0e-25 117.9 119 54.6
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 6.5e-25 117.5 121 51.2
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 8.6e-25 117.1 119 52.9
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 8.6e-25 117.1 119 54.6
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 8.6e-25 117.1 117 47.9
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 8.6e-25 117.1 117 47.9
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 1.1e-24 116.7 113 56.6
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 1.1e-24 116.7 113 56.6
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 1.5e-24 116.3 115 53.0
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 1.5e-24 116.3 116 54.3
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 1.5e-24 116.3 125 48.8
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 1.9e-24 115.9 117 51.3
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 1.9e-24 115.9 113 54.0
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 3.3e-24 115.2 113 49.6
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 4.2e-24 114.8 120 48.3
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 4.2e-24 114.8 107 52.3
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 4.2e-24 114.8 107 52.3
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 4.2e-24 114.8 102 59.8
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 7.2e-24 114.0 98 54.1
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 7.2e-24 114.0 112 50.9
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 7.2e-24 114.0 114 49.1
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 7.2e-24 114.0 117 53.0
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 9.5e-24 113.6 114 49.1
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 9.5e-24 113.6 109 53.2
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 1.2e-23 113.2 116 55.2
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 1.2e-23 113.2 103 58.3
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 2.1e-23 112.5 112 48.2
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 2.8e-23 112.1 113 51.3
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 2.8e-23 112.1 113 51.3
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 2.8e-23 112.1 113 51.3
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 3.6e-23 111.7 103 50.5
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 3.6e-23 111.7 103 50.5
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 3.6e-23 111.7 101 58.4
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 3.6e-23 111.7 117 51.3
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 4.7e-23 111.3 101 55.4
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 4.7e-23 111.3 110 50.9
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 6.1e-23 110.9 110 51.8
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 6.1e-23 110.9 110 51.8
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 8.0e-23 110.5 110 52.7
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 8.0e-23 110.5 106 53.8
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 8.0e-23 110.5 117 50.4
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.0e-22 110.2 110 50.9
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 1.0e-22 110.2 114 54.4
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 1.4e-22 109.8 117 48.7
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 1.8e-22 109.4 122 46.7
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 1.8e-22 109.4 117 48.7
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 3.0e-22 108.6 120 46.7
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 5.2e-22 107.8 110 50.9
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 5.2e-22 107.8 110 50.9
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 6.8e-22 107.5 117 47.9
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 6.8e-22 107.5 116 54.3
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 6.8e-22 107.5 110 50.0
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.2e-21 106.7 123 49.6
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 1.2e-21 106.7 108 50.9
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 1.2e-21 106.7 119 51.3
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 2.0e-21 105.9 69 71.0
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 2.6e-21 105.5 110 50.0
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 2.6e-21 105.5 97 52.6
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 2.6e-21 105.5 118 50.0
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 3.4e-21 105.1 120 45.8
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 3.4e-21 105.1 108 50.0
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 3.4e-21 105.1 102 53.9
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 3.4e-21 105.1 111 49.5
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 4.4e-21 104.8 102 55.9
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.3e-20 103.2 105 52.4
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 1.7e-20 102.8 106 49.1
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 2.2e-20 102.4 106 51.9
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 2.2e-20 102.4 115 49.6
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 2.8e-20 102.1 123 47.2
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 4.9e-20 101.3 113 48.7
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 4.9e-20 101.3 115 52.2
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 8.3e-20 100.5 125 48.0
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.1e-19 100.1 120 45.0
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 1.1e-19 100.1 114 45.6
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 1.1e-19 100.1 108 50.9
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 1.8e-19 99.4 104 51.9
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 4.1e-19 98.2 103 49.5
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 5.4e-19 97.8 94 50.0
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 2.7e-18 95.5 106 51.9
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 4.5e-18 94.7 122 45.1
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 7.8e-18 94.0 108 50.9
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 7.8e-18 94.0 105 45.7
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 5.0e-17 91.3 123 39.0
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.5e-16 89.7 88 53.4
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 3.3e-16 88.6 132 41.7
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 1.6e-15 86.3 108 47.2
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 2.8e-15 85.5 98 46.9
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 3.6e-15 85.1 121 40.5
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 5.2e-14 81.3 90 47.8
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 6.8e-14 80.9 97 44.3
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 8.9e-14 80.5 113 43.4
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.5e-13 79.7 146 36.3
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 4.4e-13 78.2 135 36.3
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 5.8e-13 77.8 105 38.1
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 9.8e-13 77.0 152 32.2
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 1.3e-12 76.6 77 51.9
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 2.7e-10 68.9 145 33.8
AagrBONN_evm.TU.Sc2ySwM_362.1976 Anthoceros agrestis HOM05D003630 ORTHO05D004151 4.0e-06 55.1 76 40.8


User provided reference genes

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