Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03912 Brassica carinata HOM05D001919 ORTHO05D004490 1.5e-26 122.1 62 100.0
C03p22100 Brassica napus HOM05D001919 ORTHO05D004490 4.4e-26 120.6 60 100.0
BraA03t11154Z Brassica rapa HOM05D001919 ORTHO05D004490 4.4e-26 120.6 60 100.0
A05p11670 Brassica napus HOM05D001919 ORTHO05D004490 1.0e-22 109.4 59 91.5
BraA05t20114Z Brassica rapa HOM05D001919 ORTHO05D004490 1.0e-22 109.4 59 91.5
BcaB02g10604 Brassica carinata HOM05D001919 ORTHO05D004490 2.3e-22 108.2 59 91.5
Sp4g16310 Schrenkiella parvula HOM05D001919 ORTHO05D004490 8.6e-22 106.3 55 92.7
BolC3t14594H Brassica oleracea HOM05D001919 ORTHO05D004490 1.1e-21 105.9 52 98.1
BcaB01g03911 Brassica carinata HOM05D001919 ORTHO05D004490 3.3e-21 104.4 61 90.2
BcaC02g11466 Brassica carinata HOM05D001919 ORTHO05D004490 4.3e-21 104.0 60 86.7
C04p15130 Brassica napus HOM05D001919 ORTHO05D004490 4.3e-21 104.0 60 86.7
BolC4t23089H Brassica oleracea HOM05D001919 ORTHO05D004490 4.3e-21 104.0 60 86.7
A03p18960 Brassica napus HOM05D000064 ORTHO05D004490 5.6e-21 103.6 52 96.2
Thhalv10016784m.g Eutrema salsugineum HOM05D001919 ORTHO05D004490 1.8e-19 98.6 51 92.2
Carub.0004s1559 Capsella rubella HOM05D001919 ORTHO05D004490 5.2e-19 97.1 51 90.2
AL4G29710 Arabidopsis lyrata HOM05D001919 ORTHO05D004490 1.5e-18 95.5 51 90.2
AT2G33880 Arabidopsis thaliana HOM05D001919 ORTHO05D004490 1.5e-18 95.5 51 90.2
CARHR128040 Cardamine hirsuta HOM05D001919 ORTHO05D004490 4.1e-16 87.4 51 82.4
THA.LOC104814236 Tarenaya hassleriana HOM05D001919 ORTHO05D004490 1.1e-13 79.3 52 75.0
Aa31LG9G13800 Aethionema arabicum HOM05D001919 ORTHO05D004490 1.5e-13 79.0 51 68.6
MSTRG.7376 Avicennia marina HOM05D001919 ORTHO05D004490 9.5e-13 76.3 49 67.3
PGR042G0754 Punica granatum HOM05D001919 ORTHO05D004490 1.2e-12 75.9 49 67.3
QL05p043708 Quercus lobata HOM05D001919 ORTHO05D004490 1.2e-12 75.9 49 67.3
CiPaw.09G065800 Carya illinoinensis HOM05D001919 ORTHO05D004490 1.6e-12 75.5 49 67.3
Ciclev10015562m.g Citrus clementina HOM05D001919 ORTHO05D004490 1.6e-12 75.5 49 69.4
DCAR_028033 Daucus carota HOM05D001919 ORTHO05D004490 1.6e-12 75.5 50 66.0
SHI28462 Sapria himalayana HOM05D001919 ORTHO05D004490 1.6e-12 75.5 51 62.7
Cpa.g.sc7.12 Carica papaya HOM05D001919 ORTHO05D004490 2.1e-12 75.1 49 67.3
Duzib192G1052 Durio zibethinus HOM05D001919 ORTHO05D004490 2.1e-12 75.1 49 67.3
SGA_v2.0_scaffold16G07656 Striga asiatica HOM05D003433 ORTHO05D003921 2.1e-12 75.1 49 65.3
TWI38G2016 Tripterygium wilfordii HOM05D001919 ORTHO05D004490 2.1e-12 75.1 51 62.7
Sed0015574 Sechium edule HOM05D001919 ORTHO05D004490 3.6e-12 74.3 49 65.3
Thecc.06G178000 Theobroma cacao HOM05D001919 ORTHO05D004490 3.6e-12 74.3 49 65.3
Duzib235G1081 Durio zibethinus HOM05D001919 ORTHO05D004490 4.7e-12 73.9 49 65.3
Gorai.009G165700 Gossypium raimondii HOM05D001919 ORTHO05D004490 4.7e-12 73.9 49 65.3
HanXRQChr11g0330491 Helianthus annuus HOM05D001919 ORTHO05D004490 4.7e-12 73.9 49 69.4
Potri.004G051600 Populus trichocarpa HOM05D001919 ORTHO05D004490 4.7e-12 73.9 53 64.2
THA.LOC104812625 Tarenaya hassleriana HOM05D001919 ORTHO05D004490 4.7e-12 73.9 52 69.2
Aa31LG9G6920 Aethionema arabicum HOM05D001919 ORTHO05D004490 6.2e-12 73.6 51 66.7
Gohir.A10G029000 Gossypium hirsutum HOM05D001919 ORTHO05D004490 6.2e-12 73.6 49 63.3
Gohir.D10G029500 Gossypium hirsutum HOM05D001919 ORTHO05D004490 6.2e-12 73.6 49 63.3
Gorai.011G031300 Gossypium raimondii HOM05D001919 ORTHO05D004490 6.2e-12 73.6 49 63.3
Hma1.2p1_0155F.1_g068620 Hydrangea macrophylla HOM05D001919 ORTHO05D004490 8.1e-12 73.2 49 65.3
Manes.16G034000 Manihot esculenta HOM05D001919 ORTHO05D004490 8.1e-12 73.2 58 60.3
SalBow8G2504 Salvia bowleyana HOM05D001919 ORTHO05D004490 8.1e-12 73.2 49 65.3
Cc02_g14220 Coffea canephora HOM05D001919 ORTHO05D004490 1.1e-11 72.8 49 63.3
Gohir.A05G157800 Gossypium hirsutum HOM05D001919 ORTHO05D004490 1.1e-11 72.8 49 63.3
Gohir.D05G160500 Gossypium hirsutum HOM05D001919 ORTHO05D004490 1.1e-11 72.8 49 63.3
Potri.011G061400 Populus trichocarpa HOM05D001919 ORTHO05D004490 1.1e-11 72.8 56 58.9
Sabra11G0041800 Salix brachista HOM05D001919 ORTHO05D004490 1.1e-11 72.8 49 63.3
Sabra11G0043400 Salix brachista HOM05D001919 ORTHO05D004490 1.1e-11 72.8 56 58.9
Solyc02g077390.2 Solanum lycopersicum HOM05D001919 ORTHO05D004490 1.1e-11 72.8 49 61.2
Sopen02g022290 Solanum pennellii HOM05D001919 ORTHO05D004490 1.1e-11 72.8 49 61.2
PGSC0003DMG400010725 Solanum tuberosum HOM05D001919 ORTHO05D004490 1.1e-11 72.8 49 61.2
DCAR_006582 Daucus carota HOM05D001919 ORTHO05D004490 1.4e-11 72.4 49 63.3
Nn1g04282 Nelumbo nucifera HOM05D001919 ORTHO05D004490 1.4e-11 72.4 49 65.3
HPP92_023294 Vanilla planifolia HOM05D001919 ORTHO05D004490 1.4e-11 72.4 49 61.2
CAN.G79.74 Capsicum annuum HOM05D001919 ORTHO05D004490 1.8e-11 72.0 49 61.2
TPR.G11704 Trifolium pratense HOM05D001919 ORTHO05D004490 1.8e-11 72.0 51 58.8
EL10Ac8g20466 Beta vulgaris HOM05D001919 ORTHO05D004490 2.3e-11 71.6 52 65.4
Lj6g0021226 Lotus japonicus HOM05D001919 ORTHO05D004490 2.3e-11 71.6 50 60.0
Nn1g06358 Nelumbo nucifera HOM05D001919 ORTHO05D004490 2.3e-11 71.6 48 62.5
Nitab4.5_0000376g0020 Nicotiana tabacum HOM05D001919 ORTHO05D004490 2.3e-11 71.6 49 61.2
Peaxi162Scf00042g00077 Petunia axillaris HOM05D001919 ORTHO05D004490 2.3e-11 71.6 49 61.2
Ca_00405_v3 Cicer arietinum L. HOM05D001919 ORTHO05D004490 3.1e-11 71.2 49 63.3
COL.COLO4_31392 Corchorus olitorius HOM05D001919 ORTHO05D004490 3.1e-11 71.2 49 63.3
Eucgr.D00577 Eucalyptus grandis HOM05D001919 ORTHO05D004490 3.1e-11 71.2 49 63.3
TAR626G1914 Trochodendron aralioides HOM05D001919 ORTHO05D004490 3.1e-11 71.2 48 68.8
TAR629G3060 Trochodendron aralioides HOM05D001919 ORTHO05D004490 3.1e-11 71.2 49 63.3
unitig_899.g15240 Utricularia gibba HOM05D001919 ORTHO05D004490 3.1e-11 71.2 49 61.2
GSVIVG01021144001 Vitis vinifera HOM05D001919 ORTHO05D004490 3.1e-11 71.2 49 65.3
Atru.chr10.1753 Acer truncatum HOM05D001919 ORTHO05D004490 4.0e-11 70.9 49 63.3
A02p29560 Brassica napus HOM05D001919 ORTHO05D004490 4.0e-11 70.9 53 62.3
C02p46900 Brassica napus HOM05D001919 ORTHO05D004490 4.0e-11 70.9 53 62.3
BolC2t10738H Brassica oleracea HOM05D001919 ORTHO05D004490 4.0e-11 70.9 53 62.3
BraA02t07981Z Brassica rapa HOM05D001919 ORTHO05D004490 4.0e-11 70.9 53 62.3
Glyma.13G172700 Glycine max HOM05D001919 ORTHO05D004490 4.0e-11 70.9 49 63.3
AL8G12540 Arabidopsis lyrata HOM05D001919 ORTHO05D004490 5.2e-11 70.5 51 66.7
Dinv40624 Davidia involucrata HOM05D001919 ORTHO05D004490 5.2e-11 70.5 49 61.2
Peaxi162Scf00966g00411 Petunia axillaris HOM05D001919 ORTHO05D004490 5.2e-11 70.5 49 61.2
DCAR_004032 Daucus carota HOM05D001919 ORTHO05D004490 6.8e-11 70.1 48 64.6
Psat1g201160 Pisum sativum HOM05D001919 ORTHO05D004490 6.8e-11 70.1 49 61.2
SGA_v2.0_scaffold309G48154 Striga asiatica HOM05D001919 ORTHO05D004490 6.8e-11 70.1 49 57.1
CsaV3_6G050540 Cucumis sativus L. HOM05D001919 ORTHO05D004490 8.9e-11 69.7 49 61.2
ECA234G2613 Erigeron canadensis HOM05D001919 ORTHO05D004490 8.9e-11 69.7 51 62.7
AUR62014909 Chenopodium quinoa HOM05D001919 ORTHO05D004490 1.2e-10 69.3 52 59.6
Ca_18616_v3 Cicer arietinum L. HOM05D001919 ORTHO05D004490 1.2e-10 69.3 51 62.7
Medtr2g015000 Medicago truncatula HOM05D001919 ORTHO05D004490 1.2e-10 69.3 49 61.2
Phvul.006G179900 Phaseolus vulgaris HOM05D001919 ORTHO05D004490 1.2e-10 69.3 49 59.2
SalBow7G1268 Salvia bowleyana HOM05D001919 ORTHO05D004490 1.2e-10 69.3 43 72.1
CDE10G0232 Ceratophyllum demersum HOM05D001919 ORTHO05D004490 1.5e-10 68.9 49 61.2
ClCG01G023420 Citrullus lanatus HOM05D001919 ORTHO05D004490 1.5e-10 68.9 49 61.2
Sp2g10860 Schrenkiella parvula HOM05D001919 ORTHO05D004490 1.5e-10 68.9 51 64.7
arahy.Tifrunner.gnm1.ann1.KEU6X6 Arachis hypogaea HOM05D001919 ORTHO05D004490 2.0e-10 68.6 51 60.8
arahy.Tifrunner.gnm1.ann1.PM2MNG Arachis hypogaea HOM05D001919 ORTHO05D004490 2.0e-10 68.6 51 60.8
CiPaw.10G054300 Carya illinoinensis HOM05D001919 ORTHO05D004490 2.0e-10 68.6 49 63.3
MELO3C007244.2 Cucumis melo HOM05D001919 ORTHO05D004490 2.0e-10 68.6 50 60.0
Migut.M01086 Erythranthe guttata HOM05D001919 ORTHO05D004490 2.0e-10 68.6 48 60.4
FAN11G0091 Fragaria x ananassa HOM05D001919 ORTHO05D004490 2.0e-10 68.6 49 61.2
FAN11G3677 Fragaria x ananassa HOM05D001919 ORTHO05D004490 2.0e-10 68.6 49 61.2
Oeu043086.1 Olea europaea HOM05D001919 ORTHO05D004490 2.0e-10 68.6 50 62.0
PSO541G2659 Papaver somniferum HOM05D001919 ORTHO05D004490 2.0e-10 68.6 51 64.7
PSO675G4366 Papaver somniferum HOM05D001919 ORTHO05D004490 2.0e-10 68.6 51 64.7
Rhsim13G0181900 Rhododendron simsii HOM05D001919 ORTHO05D004490 2.0e-10 68.6 49 61.2
Aqoxy1G02239 Aquilegia oxysepala HOM05D001919 ORTHO05D004490 2.6e-10 68.2 48 64.6
FvH4_3g08310 Fragaria vesca HOM05D001919 ORTHO05D004490 2.6e-10 68.2 49 59.2
FvH4_3g10130 Fragaria vesca HOM05D001919 ORTHO05D004490 2.6e-10 68.2 49 59.2
FAN21G0880 Fragaria x ananassa HOM05D001919 ORTHO05D004490 2.6e-10 68.2 49 61.2
FAN25G1426 Fragaria x ananassa HOM05D001919 ORTHO05D004490 2.6e-10 68.2 49 61.2
Glyma.07G203000 Glycine max HOM05D001919 ORTHO05D004490 2.6e-10 68.2 51 60.8
HanXRQChr17g0561751 Helianthus annuus HOM05D001919 ORTHO05D004490 2.6e-10 68.2 49 63.3
RcHm_v2.0_Chr5g0009691 Rosa chinensis HOM05D001919 ORTHO05D004490 2.6e-10 68.2 49 59.2
CDE10G0542 Ceratophyllum demersum HOM05D001919 ORTHO05D004490 3.4e-10 67.8 49 61.2
Manes.17G051300 Manihot esculenta HOM05D001919 ORTHO05D004490 3.4e-10 67.8 49 61.2
Cfa000549 Carpinus fangiana HOM05D000064 ORTHO05D000281 4.4e-10 67.4 49 59.2
FAN16G3742 Fragaria x ananassa HOM05D001919 ORTHO05D004490 4.4e-10 67.4 48 60.4
FAN21G3850 Fragaria x ananassa HOM05D001919 ORTHO05D004490 4.4e-10 67.4 49 59.2
Lalb_Chr09g0327911 Lupinus albus HOM05D001919 ORTHO05D004490 4.4e-10 67.4 59 54.2
MD10G1286500 Malus domestica HOM05D001919 ORTHO05D004490 4.4e-10 67.4 49 57.1
DCAR_007980 Daucus carota HOM05D001919 ORTHO05D004490 5.8e-10 67.0 48 62.5
FAN16G0959 Fragaria x ananassa HOM05D001919 ORTHO05D004490 5.8e-10 67.0 49 59.2
FAN25G0323 Fragaria x ananassa HOM05D001919 ORTHO05D004490 5.8e-10 67.0 49 59.2
MD05G1307400 Malus domestica HOM05D001919 ORTHO05D004490 5.8e-10 67.0 49 57.1
AT5G45980 Arabidopsis thaliana HOM05D001919 ORTHO05D004490 7.5e-10 66.6 51 62.7
AUR62031114 Chenopodium quinoa HOM05D001919 ORTHO05D004490 7.5e-10 66.6 52 57.7
Glyma.10G069700 Glycine max HOM05D001919 ORTHO05D004490 7.5e-10 66.6 50 60.0
MBI06_g34198_MAGBIO Magnolia biondii HOM05D000064 ORTHO05D000281 7.5e-10 66.6 48 60.4
Oeu056527.1 Olea europaea HOM05D001919 ORTHO05D004490 7.5e-10 66.6 49 63.3
Phvul.003G073400 Phaseolus vulgaris HOM05D001919 ORTHO05D004490 7.5e-10 66.6 49 65.3
Prupe.4G055300 Prunus persica HOM05D001919 ORTHO05D004490 7.5e-10 66.6 49 57.1
vmacro03893 Vaccinium macrocarpon HOM05D001919 ORTHO05D004490 7.5e-10 66.6 49 61.2
Actinidia23666 Actinidia chinensis HOM05D001919 ORTHO05D004490 9.8e-10 66.2 48 58.3
arahy.Tifrunner.gnm1.ann1.6Y8JYR Arachis hypogaea HOM05D001919 ORTHO05D004490 9.8e-10 66.2 54 57.4
arahy.Tifrunner.gnm1.ann1.BECN34 Arachis hypogaea HOM05D001919 ORTHO05D004490 9.8e-10 66.2 54 57.4
Haze_06328 Corylus avellana HOM05D001919 ORTHO05D004490 9.8e-10 66.2 49 57.1
Lsat_1_v5_gn_4_51320 Lactuca sativa HOM05D001919 ORTHO05D004490 9.8e-10 66.2 49 61.2
Oeu001093.1 Olea europaea HOM05D001919 ORTHO05D004490 1.7e-09 65.5 50 60.0
THA.LOC104798411 Tarenaya hassleriana HOM05D001919 ORTHO05D004490 1.7e-09 65.5 52 61.5
CANSAT35G1097 Cannabis sativa HOM05D001919 ORTHO05D004490 2.2e-09 65.1 49 61.2
TPR.G27874 Trifolium pratense HOM05D001919 ORTHO05D004490 2.9e-09 64.7 50 52.0
Glyma.13G152644 Glycine max HOM05D001919 ORTHO05D004490 3.7e-09 64.3 50 58.0
Lalb_Chr16g0384151 Lupinus albus HOM05D001919 ORTHO05D004490 4.9e-09 63.9 49 59.2
Thhalv10001099m.g Eutrema salsugineum HOM05D001919 ORTHO05D004490 6.4e-09 63.5 50 60.0
CARHR175940 Cardamine hirsuta HOM05D001919 ORTHO05D004490 1.1e-08 62.8 51 54.9
Medtr7g025010 Medicago truncatula HOM05D000388 ORTHO05D004490 1.1e-08 62.8 48 56.2
Duzib160G0055 Durio zibethinus HOM05D001919 ORTHO05D004490 1.4e-08 62.4 49 57.1
Lalb_Chr18g0059291 Lupinus albus HOM05D001919 ORTHO05D004490 1.4e-08 62.4 50 52.0
Psat7g117160 Pisum sativum HOM05D001919 ORTHO05D004490 1.4e-08 62.4 48 60.4
Carub.0008s0194 Capsella rubella HOM05D001919 ORTHO05D004490 1.9e-08 62.0 51 56.9
HanXRQChr16g0518541 Helianthus annuus HOM05D001919 ORTHO05D004490 2.4e-08 61.6 49 55.1
Sc05g0007320 Simmondsia chinensis HOM05D001919 ORTHO05D004490 4.1e-08 60.8 49 51.0
Medtr3g462480 Medicago truncatula HOM05D001919 ORTHO05D004490 5.4e-08 60.5 49 55.1
Medtr4g088070 Medicago truncatula HOM05D001919 ORTHO05D004490 1.2e-07 59.3 47 55.3
ECA236G1034 Erigeron canadensis HOM05D002515 ORTHO05D005057 2.1e-07 58.5 49 49.0
VMungo0540G0605 Vigna mungo HOM05D001919 ORTHO05D004490 2.7e-07 58.2 42 57.1
ClCG10G017070 Citrullus lanatus HOM05D001919 ORTHO05D005057 6.0e-07 57.0 51 47.1
Atru.chr2.1548 Acer truncatum HOM05D001919 ORTHO05D005057 7.8e-07 56.6 48 45.8
Ciclev10021682m.g Citrus clementina HOM05D001919 ORTHO05D005057 7.8e-07 56.6 51 49.0
Phvul.001G106700 Phaseolus vulgaris HOM05D001919 ORTHO05D005057 7.8e-07 56.6 51 47.1
Eucgr.A02149 Eucalyptus grandis HOM05D001919 ORTHO05D005057 1.0e-06 56.2 51 45.1
MBI13_g14160_MAGBIO Magnolia biondii HOM05D001919 ORTHO05D005057 1.0e-06 56.2 52 46.2
CDE09G0339 Ceratophyllum demersum HOM05D001919 ORTHO05D005057 1.3e-06 55.8 49 49.0
ECA248G1614 Erigeron canadensis HOM05D001919 ORTHO05D004490 1.3e-06 55.8 43 55.8
Medtr7g086940 Medicago truncatula HOM05D001919 ORTHO05D005057 1.7e-06 55.5 48 43.8
ATR0602G176 Amborella trichopoda HOM05D001919 ORTHO05D004490 2.3e-06 55.1 52 57.7
CsaV3_3G039320 Cucumis sativus L. HOM05D001919 ORTHO05D005057 2.3e-06 55.1 51 47.1
Duzib128G0772 Durio zibethinus HOM05D001919 ORTHO05D005057 2.3e-06 55.1 48 52.1
HanXRQChr00c0167g0572241 Helianthus annuus HOM05D001919 ORTHO05D005057 3.0e-06 54.7 51 49.0
Lalb_Chr02g0157481 Lupinus albus HOM05D001919 ORTHO05D005057 3.9e-06 54.3 48 45.8
Ah.05g168750 Amaranthus hybridus HOM05D001919 ORTHO05D005057 5.1e-06 53.9 41 51.2
EL10Ac5g11720 Beta vulgaris HOM05D001919 ORTHO05D005057 5.1e-06 53.9 42 50.0
AUR62043402 Chenopodium quinoa HOM05D001919 ORTHO05D005057 5.1e-06 53.9 56 44.6
A01p41450 Brassica napus HOM05D001919 ORTHO05D005057 6.6e-06 53.5 50 44.0
BNapus_Darmor_BZH_scaffold_78p00260 Brassica napus HOM05D001919 ORTHO05D005057 6.6e-06 53.5 50 44.0
BolC1t05818H Brassica oleracea HOM05D001919 ORTHO05D005057 6.6e-06 53.5 50 44.0
BraA01t04569Z Brassica rapa HOM05D001919 ORTHO05D005057 6.6e-06 53.5 50 44.0
Dinv37024 Davidia involucrata HOM05D001919 ORTHO05D005057 6.6e-06 53.5 48 47.9
vmacro08697 Vaccinium macrocarpon HOM05D001919 ORTHO05D005057 6.6e-06 53.5 49 44.9
HPP92_014366 Vanilla planifolia HOM05D001919 ORTHO05D005057 6.6e-06 53.5 54 46.3
CDE08G0715 Ceratophyllum demersum HOM05D001919 ORTHO05D005057 8.6e-06 53.1 49 46.9
MELO3C009677.2 Cucumis melo HOM05D001919 ORTHO05D005057 8.6e-06 53.1 47 46.8
Duzib177G0231 Durio zibethinus HOM05D001919 ORTHO05D005057 8.6e-06 53.1 51 49.0
Glyma.19G118400 Glycine max HOM05D001919 ORTHO05D005057 8.6e-06 53.1 51 43.1
Gohir.D13G166100 Gossypium hirsutum HOM05D001919 ORTHO05D005057 8.6e-06 53.1 48 52.1
Potri.013G066900 Populus trichocarpa HOM05D001919 ORTHO05D005057 8.6e-06 53.1 48 45.8
TPR.G15874 Trifolium pratense HOM05D001919 ORTHO05D004490 8.6e-06 53.1 49 46.9


User provided reference genes

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