Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 3.4e-79 298.5 180 100.0
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 3.2e-37 159.1 182 51.6
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 4.2e-37 158.7 186 52.7
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 4.2e-37 158.7 186 52.7
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 4.2e-37 158.7 186 52.7
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 9.4e-37 157.5 186 52.2
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 9.4e-37 157.5 186 51.6
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 1.2e-36 157.1 186 51.1
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 1.2e-36 157.1 186 51.1
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.2e-36 157.1 186 52.2
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.6e-36 156.8 186 51.1
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 2.1e-36 156.4 186 51.6
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 2.1e-36 156.4 186 51.6
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 4.7e-36 155.2 186 51.1
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 4.7e-36 155.2 186 51.1
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 6.1e-36 154.8 186 52.2
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 1.8e-35 153.3 186 51.6
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 1.8e-35 153.3 186 51.6
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 4.8e-33 145.2 186 46.8
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 5.9e-31 138.3 186 45.7
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.3e-30 136.3 186 46.2
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 3.2e-29 132.5 186 45.2
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 1.6e-28 130.2 183 42.6
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 2.1e-28 129.8 186 44.6
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 3.6e-28 129.0 183 44.3
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 3.6e-28 129.0 183 44.8
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 8.0e-28 127.9 183 43.7
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 1.0e-27 127.5 186 43.0
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.4e-27 127.1 194 39.7
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.8e-27 126.7 186 44.1
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 2.3e-27 126.3 183 42.6
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 3.0e-27 125.9 183 42.6
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 3.0e-27 125.9 183 43.7
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 3.0e-27 125.9 183 42.6
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 4.0e-27 125.6 183 43.2
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 4.0e-27 125.6 183 42.6
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 5.2e-27 125.2 183 43.2
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 5.2e-27 125.2 183 42.6
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 5.2e-27 125.2 183 43.2
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 5.2e-27 125.2 183 42.6
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 6.8e-27 124.8 186 43.0
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 8.8e-27 124.4 183 42.1
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 8.8e-27 124.4 183 42.1
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.2e-26 124.0 180 43.3
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 1.5e-26 123.6 186 41.9
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.5e-26 123.6 186 42.5
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 1.5e-26 123.6 183 43.7
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.5e-26 123.6 183 43.2
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 2.0e-26 123.2 186 40.9
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 2.0e-26 123.2 170 43.5
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 2.0e-26 123.2 181 42.5
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 2.6e-26 122.9 183 42.1
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.6e-26 122.9 183 42.1
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 2.6e-26 122.9 194 40.7
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 2.6e-26 122.9 183 41.5
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 3.4e-26 122.5 183 41.5
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 3.4e-26 122.5 183 42.1
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.4e-26 122.5 183 42.1
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.4e-26 122.5 183 42.1
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 3.4e-26 122.5 183 41.5
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 4.4e-26 122.1 180 42.2
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 4.4e-26 122.1 183 42.1
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 4.4e-26 122.1 182 41.2
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 4.4e-26 122.1 181 42.5
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 4.4e-26 122.1 183 43.2
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 4.4e-26 122.1 183 43.2
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 4.4e-26 122.1 183 42.1
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 5.7e-26 121.7 183 42.6
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 5.7e-26 121.7 183 41.0
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 7.5e-26 121.3 183 41.5
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 9.8e-26 120.9 183 41.0
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 9.8e-26 120.9 194 41.8
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 1.3e-25 120.6 180 41.7
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.3e-25 120.6 182 39.6
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.7e-25 120.2 187 43.3
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 2.2e-25 119.8 183 39.9
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 2.2e-25 119.8 186 39.8
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.7e-25 119.0 183 41.0
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 4.9e-25 118.6 183 41.0
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 6.3e-25 118.2 183 40.4
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 6.3e-25 118.2 170 41.8
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 8.3e-25 117.9 178 41.0
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 8.3e-25 117.9 171 41.5
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 8.3e-25 117.9 177 41.2
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.1e-24 117.5 181 40.9
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.4e-24 117.1 183 41.0
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 1.4e-24 117.1 182 39.0
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.8e-24 116.7 183 39.3
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 1.8e-24 116.7 194 39.7
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 1.8e-24 116.7 183 40.4
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.8e-24 116.7 183 39.9
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.4e-24 116.3 186 40.3
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 4.1e-24 115.5 186 38.7
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 5.4e-24 115.2 181 39.2
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 9.2e-24 114.4 180 40.0
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.2e-23 114.0 181 38.7
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 2.0e-23 113.2 183 37.2
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 2.0e-23 113.2 183 41.5
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 2.9e-22 109.4 173 39.3
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 6.6e-22 108.2 158 40.5
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 1.9e-21 106.7 181 37.6
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.9e-21 106.7 186 38.7
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 3.3e-21 105.9 176 38.6
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 1.2e-20 104.0 171 39.2
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.8e-20 102.8 120 48.3
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 4.7e-20 102.1 134 45.5
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 3.0e-19 99.4 183 36.1
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 4.9e-17 92.0 119 44.5
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 9.2e-16 87.8 281 27.8
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 9.2e-16 87.8 172 33.1
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.3e-14 84.0 128 43.0
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.7e-14 83.6 48 77.1
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 2.5e-13 79.7 172 34.3
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 7.3e-13 78.2 48 72.9
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 9.5e-13 77.8 48 70.8
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 9.5e-13 77.8 47 74.5
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.2e-12 77.4 47 74.5
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.2e-12 77.4 47 74.5
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.6e-12 77.0 171 31.6
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 2.8e-12 76.3 133 39.1
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.1e-11 74.3 48 68.8
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 1.2e-10 70.9 161 28.6
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 1.5e-10 70.5 46 69.6
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 3.4e-10 69.3 86 50.0
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 4.4e-10 68.9 82 46.3
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 5.8e-10 68.6 81 46.9
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 1.7e-09 67.0 71 54.9
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.2e-09 66.6 81 48.1
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 6.4e-09 65.1 81 45.7
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 1.4e-08 63.9 83 43.4
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 7.0e-08 61.6 166 26.5
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.2e-07 60.8 164 27.4
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 5.0e-06 55.5 45 62.2


User provided reference genes

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