Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 4.9e-60 234.2 111 100.0
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 4.9e-60 234.2 111 100.0
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 4.9e-60 234.2 111 100.0
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 4.9e-60 234.2 111 100.0
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 6.4e-60 233.8 111 99.1
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 1.4e-59 232.6 111 99.1
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 7.1e-59 230.3 111 97.3
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 3.5e-58 228.0 111 95.5
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 7.8e-58 226.9 111 95.5
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 1.7e-57 225.7 111 97.3
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.7e-57 225.7 111 97.3
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 8.6e-57 223.4 111 93.7
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 1.5e-56 222.6 111 96.4
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 1.5e-56 222.6 111 96.4
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.9e-56 222.2 111 94.6
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.9e-56 222.2 111 93.7
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 8.1e-55 216.9 111 92.8
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 8.9e-54 213.4 111 94.6
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 2.7e-50 201.8 111 81.1
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 2.7e-50 201.8 111 81.1
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 2.7e-50 201.8 111 81.1
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 4.6e-50 201.1 111 84.7
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 7.8e-50 200.3 111 84.7
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 1.3e-49 199.5 111 83.8
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 3.0e-49 198.4 111 81.1
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 6.6e-49 197.2 111 80.2
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 8.7e-49 196.8 111 81.1
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 1.1e-48 196.4 111 82.0
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.1e-48 196.4 111 80.2
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.1e-48 196.4 111 80.2
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 2.5e-48 195.3 111 79.3
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 2.5e-48 195.3 111 80.2
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 3.3e-48 194.9 111 81.1
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 7.3e-48 193.7 111 78.4
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 7.3e-48 193.7 111 77.5
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 9.6e-48 193.4 111 80.2
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 1.2e-47 193.0 111 79.3
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 1.2e-47 193.0 111 79.3
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.2e-47 193.0 111 79.3
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.2e-47 193.0 111 79.3
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 1.6e-47 192.6 111 79.3
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 2.1e-47 192.2 111 79.3
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 2.1e-47 192.2 111 78.4
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 3.6e-47 191.4 112 81.2
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 3.6e-47 191.4 112 81.2
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 3.6e-47 191.4 111 78.4
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 3.6e-47 191.4 111 79.3
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 4.7e-47 191.0 111 81.1
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 6.2e-47 190.7 111 79.3
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.2e-47 190.7 111 76.6
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.2e-47 190.7 111 76.6
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 1.1e-46 189.9 111 77.5
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 1.4e-46 189.5 111 77.5
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.4e-46 189.5 111 79.3
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 1.4e-46 189.5 111 76.6
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 1.8e-46 189.1 111 79.3
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 1.8e-46 189.1 111 78.4
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 1.8e-46 189.1 111 80.2
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 2.4e-46 188.7 111 77.5
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 4.0e-46 188.0 111 76.6
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 5.2e-46 187.6 111 76.6
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 5.2e-46 187.6 112 78.6
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 6.9e-46 187.2 111 77.5
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 9.0e-46 186.8 111 76.6
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 9.0e-46 186.8 111 75.7
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 9.0e-46 186.8 110 77.3
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 9.0e-46 186.8 112 77.7
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 9.0e-46 186.8 107 78.5
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.5e-45 186.0 111 75.7
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 2.0e-45 185.7 111 78.4
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 2.6e-45 185.3 111 75.7
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 3.4e-45 184.9 111 73.9
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 3.4e-45 184.9 112 76.8
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 4.4e-45 184.5 111 77.5
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 4.4e-45 184.5 112 78.6
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 4.4e-45 184.5 112 78.6
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 5.8e-45 184.1 111 77.5
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 5.8e-45 184.1 111 77.5
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 5.8e-45 184.1 112 75.0
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 5.8e-45 184.1 112 75.0
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 5.8e-45 184.1 112 75.0
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 7.6e-45 183.7 112 75.0
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 7.6e-45 183.7 112 75.0
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 7.6e-45 183.7 111 76.6
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.7e-44 182.6 112 74.1
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 1.7e-44 182.6 112 76.8
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 2.9e-44 181.8 108 75.0
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 4.9e-44 181.0 111 75.7
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 4.9e-44 181.0 111 73.9
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 6.4e-44 180.6 111 73.0
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 6.4e-44 180.6 111 73.0
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 8.4e-44 180.3 111 75.7
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 8.4e-44 180.3 110 73.6
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 1.1e-43 179.9 112 76.8
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 1.1e-43 179.9 111 75.7
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.4e-43 179.5 111 72.1
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 2.4e-43 178.7 111 73.9
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 3.2e-43 178.3 112 75.0
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 5.4e-43 177.6 112 73.2
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 9.3e-43 176.8 111 71.2
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 1.2e-42 176.4 111 72.1
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.2e-42 176.4 105 76.2
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.2e-42 176.4 111 73.0
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 1.6e-42 176.0 111 74.8
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 2.1e-42 175.6 111 73.9
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 2.1e-42 175.6 111 73.9
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 2.7e-42 175.3 98 79.6
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.5e-42 174.9 111 72.1
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 6.0e-42 174.1 111 73.0
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 1.0e-41 173.3 111 72.1
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 1.0e-41 173.3 100 77.0
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.7e-41 172.6 111 70.3
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.3e-41 172.2 100 79.0
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 3.0e-41 171.8 111 70.3
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 5.1e-41 171.0 107 72.9
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.5e-40 168.7 111 69.4
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 3.1e-38 161.8 98 71.4
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 1.5e-37 159.5 111 64.0
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 5.4e-35 151.0 108 66.7
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 6.7e-33 144.1 86 72.1
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.8e-31 137.9 85 70.6
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 2.9e-28 128.6 97 58.8
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 3.2e-27 125.2 100 57.0
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.0e-25 120.2 104 53.8
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 3.9e-25 118.2 98 52.0
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 6.7e-25 117.5 95 53.7
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 3.3e-24 115.2 68 76.5
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 7.4e-24 114.0 70 71.4
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 2.1e-18 95.9 97 42.3
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 1.0e-12 77.0 105 34.3
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.0e-09 65.5 111 40.5


User provided reference genes

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