Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 4.2e-120 434.9 247 100.0
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 4.2e-112 408.3 249 91.2
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 1.4e-110 403.3 248 91.1
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 1.4e-110 403.3 248 91.1
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 5.1e-110 401.4 247 89.1
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 2.1e-103 379.4 249 85.5
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 5.2e-102 374.8 249 80.3
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 8.8e-102 374.0 252 81.0
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 1.5e-101 373.2 247 80.6
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 5.7e-101 371.3 247 80.2
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 1.1e-99 367.1 247 79.4
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.1e-99 367.1 252 80.2
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 1.4e-99 366.7 250 80.4
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.2e-98 363.6 247 78.9
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 2.2e-97 359.4 248 79.8
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 7.5e-93 344.4 253 77.1
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 1.6e-87 326.6 223 80.3
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 3.6e-79 298.9 253 65.6
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 1.2e-77 293.9 251 64.9
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 2.7e-74 282.7 251 61.4
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 2.9e-73 279.3 253 60.5
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 8.6e-73 277.7 252 61.9
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 1.1e-72 277.3 251 60.2
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 1.5e-72 276.9 257 59.1
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 1.9e-72 276.6 251 59.8
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 1.9e-72 276.6 251 59.4
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 1.9e-72 276.6 251 59.4
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 3.3e-72 275.8 255 62.4
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 4.3e-72 275.4 254 59.8
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 4.3e-72 275.4 251 59.8
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 5.6e-72 275.0 251 59.8
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.6e-72 275.0 250 60.4
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 7.3e-72 274.6 251 60.2
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 7.3e-72 274.6 253 60.9
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.2e-71 273.9 249 59.4
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 2.1e-71 273.1 252 61.1
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 2.8e-71 272.7 251 59.8
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 2.8e-71 272.7 248 59.3
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 3.6e-71 272.3 253 59.7
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 8.0e-71 271.2 152 84.2
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 8.0e-71 271.2 251 59.0
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 1.0e-70 270.8 251 60.2
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 1.4e-70 270.4 252 59.9
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 1.4e-70 270.4 249 61.0
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.4e-70 270.4 253 59.3
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 1.8e-70 270.0 252 59.1
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.8e-70 270.0 251 59.8
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 2.3e-70 269.6 251 59.8
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 2.3e-70 269.6 252 58.3
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 4.0e-70 268.9 257 57.6
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.0e-70 268.9 257 57.6
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.0e-70 268.9 257 57.6
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 5.2e-70 268.5 251 60.2
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 5.2e-70 268.5 257 57.6
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 6.8e-70 268.1 260 60.4
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 6.8e-70 268.1 253 59.7
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 8.9e-70 267.7 251 59.8
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 8.9e-70 267.7 251 59.4
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.2e-69 267.3 257 57.2
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.0e-69 266.5 262 56.9
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 2.6e-69 266.2 252 60.3
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 2.6e-69 266.2 260 58.1
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 3.4e-69 265.8 152 83.6
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 4.4e-69 265.4 247 57.5
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 4.4e-69 265.4 251 59.8
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 5.8e-69 265.0 251 59.8
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 5.8e-69 265.0 152 81.6
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 7.5e-69 264.6 251 58.6
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 7.5e-69 264.6 251 59.4
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 7.5e-69 264.6 152 81.6
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 7.5e-69 264.6 251 59.0
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 7.5e-69 264.6 152 82.9
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 9.8e-69 264.2 153 84.3
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 9.8e-69 264.2 253 57.3
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.3e-68 263.8 152 84.2
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 1.3e-68 263.8 152 82.9
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.3e-68 263.8 152 81.6
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 1.7e-68 263.5 255 59.6
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 6.4e-68 261.5 251 58.6
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 1.1e-67 260.8 251 58.6
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 1.1e-67 260.8 254 57.9
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.1e-67 260.8 152 80.9
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.4e-67 260.4 252 59.1
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 2.4e-67 259.6 252 57.1
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 2.4e-67 259.6 257 58.0
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 3.2e-67 259.2 255 57.6
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 3.2e-67 259.2 153 81.7
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 9.2e-67 257.7 254 56.7
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.2e-66 257.3 153 82.4
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 1.2e-66 257.3 254 57.9
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.6e-66 256.9 249 56.2
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 2.0e-66 256.5 152 79.6
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 2.0e-66 256.5 253 56.5
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 2.0e-66 256.5 239 57.3
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.7e-66 256.1 225 60.9
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 4.6e-66 255.4 251 58.6
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 4.6e-66 255.4 250 57.2
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.0e-65 254.2 148 81.1
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 1.0e-65 254.2 152 80.3
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 1.7e-65 253.4 250 56.4
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 3.0e-65 252.7 248 57.3
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 8.6e-65 251.1 242 59.5
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.1e-64 250.8 152 77.6
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 2.5e-64 249.6 152 79.6
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 2.1e-63 246.5 197 63.5
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 3.6e-63 245.7 253 54.9
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 6.2e-63 245.0 247 55.9
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.1e-62 244.2 152 77.0
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 6.8e-62 241.5 146 78.8
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 2.6e-61 239.6 243 58.0
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 6.4e-60 235.0 152 74.3
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 1.1e-59 234.2 111 100.0
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 4.6e-58 228.8 224 56.2
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 2.3e-57 226.5 254 51.2
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.1e-56 224.2 238 52.9
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 7.1e-51 204.9 120 78.3
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 9.2e-51 204.5 211 56.9
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 7.8e-50 201.4 121 76.0
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 1.3e-49 200.7 121 78.5
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 1.9e-43 180.3 139 59.7
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 7.8e-42 174.9 153 60.1
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 1.3e-41 174.1 141 57.4
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 1.7e-41 173.7 122 68.9
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 4.0e-38 162.5 137 54.7
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 7.6e-37 158.3 139 52.5
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.6e-34 150.6 145 51.7
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.1e-30 137.9 85 70.6
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 2.3e-25 120.2 139 39.6
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 7.4e-24 115.2 68 76.5
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 7.4e-16 88.6 150 30.0
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 9.3e-11 71.6 129 34.1
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.1e-10 70.5 115 41.7


User provided reference genes

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