Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 3.2e-36 154.8 94 100.0
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 1.9e-25 119.0 92 88.0
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 1.9e-25 119.0 92 88.0
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 5.6e-25 117.5 92 87.0
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 1.6e-24 115.9 92 85.9
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 1.6e-24 115.9 92 85.9
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 5.3e-23 110.9 92 70.7
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 6.9e-23 110.5 94 77.7
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 9.0e-23 110.2 91 71.4
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 2.6e-22 108.6 86 82.6
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 4.5e-22 107.8 92 73.9
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 5.8e-22 107.5 86 81.4
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 1.9e-20 102.4 89 76.4
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 8.7e-18 93.6 85 72.9
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 5.7e-17 90.9 78 69.2
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 5.7e-17 90.9 92 60.9
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 9.0e-15 83.6 81 54.3
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 2.6e-14 82.0 75 60.0
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 3.4e-14 81.6 90 53.3
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 4.5e-14 81.3 89 52.8
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 4.5e-14 81.3 75 60.0
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 4.5e-14 81.3 81 53.1
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 5.9e-14 80.9 75 58.7
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 7.7e-14 80.5 75 58.7
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 7.7e-14 80.5 75 58.7
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 7.7e-14 80.5 75 58.7
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 7.7e-14 80.5 75 58.7
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 7.7e-14 80.5 75 58.7
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 7.7e-14 80.5 75 58.7
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.0e-13 80.1 89 51.7
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 1.3e-13 79.7 81 56.8
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 1.3e-13 79.7 81 56.8
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 2.2e-13 79.0 86 53.5
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 2.2e-13 79.0 86 53.5
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 2.2e-13 79.0 86 53.5
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 2.2e-13 79.0 86 53.5
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 5.0e-13 77.8 87 50.6
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 8.5e-13 77.0 78 53.8
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.4e-12 76.3 75 60.0
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 2.5e-12 75.5 77 55.8
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 4.2e-12 74.7 80 55.0
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 4.2e-12 74.7 75 57.3
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 9.4e-12 73.6 73 57.5
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 1.2e-11 73.2 77 57.1
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 1.6e-11 72.8 85 52.9
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 1.6e-11 72.8 77 57.1
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 2.1e-11 72.4 71 56.3
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 2.7e-11 72.0 77 57.1
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 2.7e-11 72.0 75 53.3
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 2.7e-11 72.0 79 54.4
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 3.6e-11 71.6 76 53.9
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 3.6e-11 71.6 83 50.6
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 3.6e-11 71.6 76 55.3
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 6.1e-11 70.9 71 53.5
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 6.1e-11 70.9 79 54.4
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 7.9e-11 70.5 77 51.9
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 7.9e-11 70.5 73 54.8
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 7.9e-11 70.5 75 52.0
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 2.3e-10 68.9 98 45.9
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 3.0e-10 68.6 76 55.3
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.0e-10 68.6 98 45.9
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.0e-10 68.6 98 45.9
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 3.0e-10 68.6 85 51.8
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 3.9e-10 68.2 70 54.3
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 5.1e-10 67.8 98 45.9
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 6.7e-10 67.4 92 44.6
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 6.7e-10 67.4 99 45.5
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 6.7e-10 67.4 92 44.6
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 6.7e-10 67.4 71 54.9
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 8.8e-10 67.0 70 55.7
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 8.8e-10 67.0 101 42.6
Thhalv10017703m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 1.5e-09 66.2 43 81.4
Sp4g18110 Schrenkiella parvula HOM05D005113 ORTHO05D006045 2.5e-09 65.5 43 81.4
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 3.3e-09 65.1 68 54.4
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 4.3e-09 64.7 85 48.2
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 4.3e-09 64.7 76 52.6
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 5.7e-09 64.3 78 51.3
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.3e-08 63.2 91 44.0
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 1.3e-08 63.2 81 48.1
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.3e-08 63.2 71 50.7
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 1.7e-08 62.8 71 49.3
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.8e-08 62.0 76 43.4
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 3.7e-08 61.6 79 45.6
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 3.7e-08 61.6 79 45.6
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 3.7e-08 61.6 99 40.4
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 3.7e-08 61.6 78 47.4
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 3.7e-08 61.6 79 48.1
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 4.8e-08 61.2 90 45.6
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 6.3e-08 60.8 71 49.3
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 8.2e-08 60.5 93 40.9
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 8.2e-08 60.5 71 49.3
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 8.2e-08 60.5 85 50.6
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 1.1e-07 60.1 79 45.6
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.1e-07 60.1 76 43.4
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.8e-07 59.3 80 48.8
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 5.3e-07 57.8 87 44.8
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 9.1e-07 57.0 79 45.6
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 2.0e-06 55.8 79 51.9
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 2.6e-06 55.5 78 44.9
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 3.4e-06 55.1 85 40.0
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 4.5e-06 54.7 99 38.4


User provided reference genes

Program Settings