Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 1.1e-173 613.2 314 100.0
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 3.4e-159 565.1 314 91.1
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 3.4e-159 565.1 314 91.1
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 5.1e-155 551.2 314 90.1
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 5.1e-155 551.2 314 89.5
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 5.7e-154 547.7 314 89.5
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 4.5e-143 511.5 314 84.1
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 4.3e-138 495.0 308 81.5
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 5.7e-138 494.6 314 79.3
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 1.8e-136 489.6 314 79.6
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 3.4e-135 485.3 314 78.3
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 3.0e-131 472.2 314 76.8
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 5.7e-114 414.8 306 67.6
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 9.4e-109 397.5 313 62.3
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 6.3e-105 384.8 313 62.0
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 5.4e-104 381.7 313 61.3
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 7.0e-104 381.3 312 61.2
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 2.0e-103 379.8 313 61.0
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 6.6e-102 374.8 308 62.0
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 8.6e-102 374.4 312 59.9
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 2.5e-101 372.9 311 62.4
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 5.6e-101 371.7 317 60.6
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 9.5e-101 370.9 313 59.7
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 2.8e-100 369.4 314 61.8
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 3.6e-100 369.0 305 62.6
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 3.6e-100 369.0 317 60.6
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 8.0e-100 367.9 308 61.4
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 6.8e-99 364.8 308 59.1
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 8.9e-99 364.4 306 61.8
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 1.5e-98 363.6 312 59.3
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 2.0e-98 363.2 312 59.6
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 3.4e-98 362.5 310 59.7
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 4.4e-98 362.1 307 59.3
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 7.5e-98 361.3 311 60.1
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 1.3e-97 360.5 306 61.1
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 2.2e-97 359.8 313 58.5
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 3.7e-97 359.0 310 59.7
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 3.7e-97 359.0 317 58.0
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 4.9e-97 358.6 307 57.3
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 4.9e-97 358.6 330 57.3
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 6.4e-97 358.2 308 59.7
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 1.1e-96 357.5 311 60.8
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.8e-96 356.7 311 57.6
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 2.4e-96 356.3 310 60.3
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 2.4e-96 356.3 308 60.1
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 5.4e-96 355.1 310 56.5
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 7.0e-96 354.8 306 58.2
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 9.2e-96 354.4 309 58.9
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 2.7e-95 352.8 311 57.2
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 5.9e-95 351.7 308 60.1
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 1.0e-94 350.9 311 58.5
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 1.7e-94 350.1 314 57.0
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 3.0e-94 349.4 313 58.1
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 8.6e-94 347.8 311 57.9
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 1.9e-93 346.7 309 58.6
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 1.9e-93 346.7 315 56.2
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 4.3e-93 345.5 306 58.2
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 5.6e-93 345.1 305 58.4
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 8.0e-92 341.3 313 58.1
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 2.3e-91 339.7 313 57.8
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.3e-91 339.7 313 56.9
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 1.2e-90 337.4 313 57.8
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 9.8e-90 334.3 296 57.8
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 9.8e-90 334.3 312 58.0
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 2.2e-89 333.2 332 53.9
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 4.9e-89 332.0 311 55.3
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 6.4e-89 331.6 312 55.4
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 6.4e-89 331.6 296 57.4
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 1.9e-88 330.1 304 55.9
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 2.0e-87 326.6 310 55.5
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 2.3e-86 323.2 316 53.5
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 6.6e-86 321.6 295 54.9
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.5e-85 319.7 322 53.7
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 8.9e-83 311.2 307 52.8
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 3.7e-81 305.8 286 58.7
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 1.1e-80 304.3 264 61.7
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 5.4e-80 302.0 311 51.8
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 7.8e-79 298.1 274 59.9
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 8.6e-78 294.7 314 52.9
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 5.6e-77 292.0 313 49.8
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 5.6e-77 292.0 269 59.9
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 1.1e-75 287.7 232 62.5
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 1.1e-75 287.7 197 79.7
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.4e-75 287.3 270 57.0
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 2.3e-75 286.6 315 50.2
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 3.1e-75 286.2 307 49.5
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 2.0e-74 283.5 328 50.3
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 8.4e-73 278.1 263 58.2
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 9.2e-72 274.6 258 57.0
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 1.1e-69 267.7 226 60.2
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 2.1e-68 263.5 229 59.8
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 2.8e-68 263.1 241 58.9
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 3.1e-67 259.6 263 54.4
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 2.0e-66 256.9 260 51.5
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 2.9e-65 253.1 245 58.4
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 5.1e-62 242.3 308 44.5
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.5e-58 230.7 283 47.0
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 2.6e-58 229.9 212 55.7
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 8.4e-57 224.9 228 52.6
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 5.4e-56 222.2 307 44.3
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 3.5e-55 219.5 186 55.9
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 5.1e-54 215.7 314 39.2
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 4.3e-53 212.6 309 39.8
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 1.3e-52 211.1 302 43.0
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 6.9e-51 205.3 293 40.6
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 2.1e-47 193.7 178 56.2
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 1.2e-42 177.9 233 43.3
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 7.6e-42 175.3 158 56.3
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 2.1e-39 167.2 162 51.9
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 7.4e-37 158.7 214 43.9
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 1.1e-35 154.8 109 68.8
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 1.1e-35 154.8 318 34.6
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 2.2e-33 147.1 163 52.1
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 1.2e-31 141.4 152 51.3
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 2.2e-28 130.6 160 45.6
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.0e-25 121.7 166 41.0
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 2.2e-25 120.6 183 41.0
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 1.9e-24 117.5 252 36.5
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 4.2e-24 116.3 90 60.0
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 5.5e-24 115.9 223 36.8
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 1.6e-23 114.4 145 42.1
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 4.3e-21 106.3 76 63.2
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.4e-19 101.3 83 61.4
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 4.1e-19 99.8 83 60.2
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 3.4e-18 96.7 119 42.9
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 9.7e-13 78.6 70 45.7
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 2.2e-12 77.4 107 42.1
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 6.3e-12 75.9 143 37.1
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.2e-10 71.6 196 32.1
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 2.7e-07 60.5 37 75.7


User provided reference genes

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