Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03837 Brassica carinata HOM05D003485 ORTHO05D004004 1.4e-232 809.3 428 100.0
C03p23590 Brassica napus HOM05D003485 ORTHO05D004004 5.7e-181 637.9 426 81.2
BolC3t14754H Brassica oleracea HOM05D003485 ORTHO05D004004 5.7e-181 637.9 426 81.2
BcaC01g05657 Brassica carinata HOM05D003485 ORTHO05D004004 8.2e-180 634.0 426 81.2
A03p20140 Brassica napus HOM05D003485 ORTHO05D004004 4.5e-178 628.2 427 81.0
BraA03t11264Z Brassica rapa HOM05D003485 ORTHO05D004004 2.2e-177 625.9 427 80.8
Sp4g18720 Schrenkiella parvula HOM05D003485 ORTHO05D004004 7.0e-163 577.8 441 77.1
BolC4t22814H Brassica oleracea HOM05D003485 ORTHO05D004004 1.0e-158 563.9 441 73.5
CARHR130720 Cardamine hirsuta HOM05D003485 ORTHO05D004004 3.0e-158 562.4 437 74.6
BcaC02g07593 Brassica carinata HOM05D003485 ORTHO05D004004 8.2e-156 554.3 428 73.1
BolC4t28026H Brassica oleracea HOM05D003485 ORTHO05D004004 8.2e-156 554.3 428 73.1
BcaB06g28940 Brassica carinata HOM05D003485 ORTHO05D004004 9.1e-155 550.8 434 72.4
BraA04t18284Z Brassica rapa HOM05D003485 ORTHO05D004004 3.5e-154 548.9 429 72.0
BraA05t19893Z Brassica rapa HOM05D003485 ORTHO05D004004 1.0e-150 537.3 442 72.2
BcaC02g11759 Brassica carinata HOM05D003485 ORTHO05D004004 3.0e-150 535.8 448 69.4
C04p11650 Brassica napus HOM05D003485 ORTHO05D004004 6.3e-148 528.1 440 70.0
BcaB02g09354 Brassica carinata HOM05D003485 ORTHO05D004004 5.3e-147 525.0 438 71.7
AT2G36420 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 2.7e-146 522.7 435 70.6
AL4G32600 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 5.0e-145 518.5 444 68.7
Carub.0004s1823 Capsella rubella HOM05D003485 ORTHO05D004004 2.0e-141 506.5 453 66.7
A05p09350 Brassica napus HOM05D003485 ORTHO05D004004 3.5e-138 495.7 439 68.6
Aa31LG5G21610 Aethionema arabicum HOM05D003485 ORTHO05D004004 8.7e-73 278.5 429 45.2
A04p27950 Brassica napus HOM05D003485 ORTHO05D004004 8.4e-68 261.9 210 69.0
THA.LOC104805079 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 9.7e-64 248.4 469 42.0
THA.LOC104823464 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 2.5e-59 233.8 455 39.8
Duzib093G1418 Durio zibethinus HOM05D003485 ORTHO05D004004 1.5e-48 198.0 539 33.6
Cpa.g.sc5.65 Carica papaya HOM05D003485 ORTHO05D004004 7.4e-48 195.7 563 33.9
Haze_19558 Corylus avellana HOM05D003485 ORTHO05D004004 1.8e-46 191.0 535 32.9
Ciclev10011456m.g Citrus clementina HOM05D003485 ORTHO05D004004 2.4e-46 190.7 553 31.3
Sed0015592 Sechium edule HOM05D003485 ORTHO05D004004 2.6e-45 187.2 476 33.2
Prupe.7G115800 Prunus persica HOM05D003485 ORTHO05D004004 7.7e-45 185.7 559 31.1
FvH4_6g18100 Fragaria vesca HOM05D003485 ORTHO05D004004 1.0e-44 185.3 531 30.9
VMungo1383G1455 Vigna mungo HOM05D003485 ORTHO05D004004 2.9e-44 183.7 522 33.0
A04p27940 Brassica napus HOM05D003485 ORTHO05D004004 5.0e-44 183.0 141 73.0
FAN14G1728 Fragaria x ananassa HOM05D003485 ORTHO05D004004 5.0e-44 183.0 531 30.1
Glyma.03G192000 Glycine max HOM05D003485 ORTHO05D004004 8.5e-44 182.2 528 31.4
AL6G13180 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 1.9e-43 181.0 532 33.1
MD12G1019500 Malus domestica HOM05D003485 ORTHO05D004004 1.9e-43 181.0 534 33.0
CiPaw.09G009600 Carya illinoinensis HOM05D003485 ORTHO05D004004 2.5e-43 180.6 552 33.2
Gorai.006G157500 Gossypium raimondii HOM05D003485 ORTHO05D004004 4.2e-43 179.9 517 34.4
MELO3C024521.2 Cucumis melo HOM05D003485 ORTHO05D004004 2.1e-42 177.6 521 32.6
FAN09G2203 Fragaria x ananassa HOM05D003485 ORTHO05D004004 2.1e-42 177.6 525 31.0
MD14G1017300 Malus domestica HOM05D003485 ORTHO05D004004 2.7e-42 177.2 526 34.6
Cfa016557 Carpinus fangiana HOM05D003485 ORTHO05D004004 4.7e-42 176.4 539 32.1
RcHm_v2.0_Chr3g0472371 Rosa chinensis HOM05D003485 ORTHO05D004004 4.7e-42 176.4 542 30.6
Thhalv10016054m.g Eutrema salsugineum HOM05D003485 ORTHO05D004004 1.0e-41 175.3 523 34.4
FAN05G0153 Fragaria x ananassa HOM05D003485 ORTHO05D004004 1.4e-41 174.9 531 32.2
FAN05G0444 Fragaria x ananassa HOM05D003485 ORTHO05D004004 1.4e-41 174.9 531 32.2
Gohir.D09G137200 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.4e-41 174.9 525 33.7
QL07p040106 Quercus lobata HOM05D003485 ORTHO05D004004 1.4e-41 174.9 562 32.4
AT5G03670 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 1.8e-41 174.5 533 33.6
CsaV3_6G040450 Cucumis sativus L. HOM05D003485 ORTHO05D004004 1.8e-41 174.5 511 32.5
Thecc.05G083100 Theobroma cacao HOM05D003485 ORTHO05D004004 2.3e-41 174.1 540 33.3
MSTRG.5814 Avicennia marina HOM05D003485 ORTHO05D004004 3.0e-41 173.7 517 30.8
Gohir.A09G136100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 3.0e-41 173.7 517 33.8
Gohir.A01G208100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 3.9e-41 173.3 520 32.9
BolC9t60060H Brassica oleracea HOM05D003485 ORTHO05D004004 5.2e-41 172.9 512 33.2
FAN02G1693 Fragaria x ananassa HOM05D003485 ORTHO05D004004 5.2e-41 172.9 532 32.3
Phvul.001G187300 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 5.2e-41 172.9 522 30.7
C03p01670 Brassica napus HOM05D003485 ORTHO05D004004 6.7e-41 172.6 514 33.9
BolC3t12719H Brassica oleracea HOM05D003485 ORTHO05D004004 8.8e-41 172.2 514 33.9
Gorai.002G241600 Gossypium raimondii HOM05D003485 ORTHO05D004004 8.8e-41 172.2 522 33.9
Duzib106G1512 Durio zibethinus HOM05D003485 ORTHO05D004004 1.1e-40 171.8 537 30.9
Duzib128G0159 Durio zibethinus HOM05D003485 ORTHO05D004004 1.1e-40 171.8 540 30.0
BcaB01g05795 Brassica carinata HOM05D003485 ORTHO05D004004 1.5e-40 171.4 514 33.7
ClCG04G009820 Citrullus lanatus HOM05D003485 ORTHO05D004004 1.5e-40 171.4 513 31.8
Glyma.19G192500 Glycine max HOM05D003485 ORTHO05D004004 1.5e-40 171.4 535 31.6
Gohir.D01G197500 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.5e-40 171.4 526 34.0
CiPaw.10G006300 Carya illinoinensis HOM05D003485 ORTHO05D004004 3.3e-40 170.2 556 32.2
C09p73250 Brassica napus HOM05D003485 ORTHO05D004004 4.4e-40 169.9 507 33.3
Manes.09G058764 Manihot esculenta HOM05D003485 ORTHO05D004004 4.4e-40 169.9 557 30.7
Sed0013820 Sechium edule HOM05D003485 ORTHO05D004004 4.4e-40 169.9 474 32.5
THA.LOC104816367 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 5.7e-40 169.5 536 32.3
A03p01320 Brassica napus HOM05D003485 ORTHO05D004004 7.4e-40 169.1 521 33.6
TWI74G0849 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 1.3e-39 168.3 571 31.5
PGSC0003DMG400028260 Solanum tuberosum HOM05D003485 ORTHO05D004004 1.7e-39 167.9 446 35.7
Sp6g39060 Schrenkiella parvula HOM05D003485 ORTHO05D004004 4.8e-39 166.4 536 33.6
BcaB01g05809 Brassica carinata HOM05D003485 ORTHO05D004004 6.3e-39 166.0 529 31.6
BraA03t09512Z Brassica rapa HOM05D003485 ORTHO05D004004 6.3e-39 166.0 521 33.4
Lj5g0007324 Lotus japonicus HOM05D003485 ORTHO05D004004 1.8e-38 164.5 518 31.1
Aa31LG1G21550 Aethionema arabicum HOM05D003485 ORTHO05D004004 2.4e-38 164.1 500 33.2
Solyc09g009220.4 Solanum lycopersicum HOM05D003485 ORTHO05D004004 2.4e-38 164.1 492 30.3
Hma1.2p1_0084F.1_g043350 Hydrangea macrophylla HOM05D003485 ORTHO05D004004 4.1e-38 163.3 514 33.5
PGSC0003DMG400002678 Solanum tuberosum HOM05D003485 ORTHO05D004004 4.1e-38 163.3 500 30.4
Phvul.007G222400 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 9.1e-38 162.2 492 30.5
Nitab4.5_0003454g0060 Nicotiana tabacum HOM05D003485 ORTHO05D004004 2.0e-37 161.0 495 32.5
Sabra06G0090200 Salix brachista HOM05D003485 ORTHO05D004004 2.0e-37 161.0 555 33.0
Manes.08G022100 Manihot esculenta HOM05D003485 ORTHO05D004004 2.6e-37 160.6 539 30.6
Oeu032419.1 Olea europaea HOM05D003485 ORTHO05D004004 2.6e-37 160.6 478 31.4
BcaC06g32076 Brassica carinata HOM05D003485 ORTHO05D004004 4.5e-37 159.8 512 33.6
Oeu040530.1 Olea europaea HOM05D003485 ORTHO05D004004 5.9e-37 159.5 486 31.5
Lj1g0007531 Lotus japonicus HOM05D003485 ORTHO05D004004 7.7e-37 159.1 548 31.2
SalBow3G3191 Salvia bowleyana HOM05D003485 ORTHO05D004004 1.0e-36 158.7 436 34.2
A10p32430 Brassica napus HOM05D003485 ORTHO05D004004 2.9e-36 157.1 510 31.2
BraA10t45283Z Brassica rapa HOM05D003485 ORTHO05D004004 2.9e-36 157.1 510 31.2
TWI53G1381 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 3.8e-36 156.8 555 31.9
TPR.G5671 Trifolium pratense HOM05D003485 ORTHO05D004004 1.1e-35 155.2 549 28.1
TWI77G0029 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 1.1e-35 155.2 525 29.5
CsaV3_3G036950 Cucumis sativus L. HOM05D003485 ORTHO05D004004 1.5e-35 154.8 480 34.2
THA.LOC104826931 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 1.5e-35 154.8 532 31.4
Lsat_1_v5_gn_2_20881 Lactuca sativa HOM05D003485 ORTHO05D004004 1.9e-35 154.5 504 32.3
arahy.Tifrunner.gnm1.ann1.FM4PU3 Arachis hypogaea HOM05D003485 ORTHO05D004004 4.2e-35 153.3 499 31.7
ClCG10G019240 Citrullus lanatus HOM05D003485 ORTHO05D004004 4.2e-35 153.3 479 32.4
Nitab4.5_0000132g0120 Nicotiana tabacum HOM05D003485 ORTHO05D004004 9.4e-35 152.1 449 33.0
PGR004G2186 Punica granatum HOM05D003485 ORTHO05D004004 9.4e-35 152.1 485 33.2
MSTRG.26648 Avicennia marina HOM05D003485 ORTHO05D004004 1.2e-34 151.8 502 29.7
Medtr1g060890 Medicago truncatula HOM05D003485 ORTHO05D004004 1.2e-34 151.8 544 29.4
GSVIVG01033797001 Vitis vinifera HOM05D003485 ORTHO05D004004 1.2e-34 151.8 463 31.1
Sopen10g033000 Solanum pennellii HOM05D003485 ORTHO05D004004 1.6e-34 151.4 430 34.4
PGR142G1952 Punica granatum HOM05D003485 ORTHO05D004004 1.0e-33 148.7 517 30.9
CSS0002533 Camellia sinensis var. sinensis HOM05D003485 ORTHO05D004004 1.4e-33 148.3 510 30.0
Glyma.10G067100 Glycine max HOM05D003485 ORTHO05D004004 1.8e-33 147.9 510 30.4
Atru.chr8.1615 Acer truncatum HOM05D003485 ORTHO05D004004 2.3e-33 147.5 553 32.0
MSTRG.10354 Avicennia marina HOM05D003485 ORTHO05D004004 5.2e-33 146.4 473 29.6
arahy.Tifrunner.gnm1.ann1.UZ5M1P Arachis hypogaea HOM05D003485 ORTHO05D004004 6.8e-33 146.0 498 31.7
Potri.006G115300 Populus trichocarpa HOM05D003485 ORTHO05D004004 1.2e-32 145.2 559 31.5
TAR369G0025 Trochodendron aralioides HOM05D003485 ORTHO05D004004 1.2e-32 145.2 522 32.2
HanXRQChr01g0028981 Helianthus annuus HOM05D003485 ORTHO05D004004 4.4e-32 143.3 489 31.1
DCAR_013367 Daucus carota HOM05D003485 ORTHO05D004004 5.7e-32 142.9 484 31.0
CAN.G824.15 Capsicum annuum HOM05D003485 ORTHO05D004004 7.5e-32 142.5 508 30.5
Peaxi162Scf00068g00085 Petunia axillaris HOM05D003485 ORTHO05D004004 2.2e-31 141.0 508 30.9
Sed0026564 Sechium edule HOM05D003485 ORTHO05D004004 2.2e-31 141.0 448 32.4
Solyc10g083530.2 Solanum lycopersicum HOM05D003485 ORTHO05D004004 2.2e-31 141.0 436 32.3
EL10Ac7g16972 Beta vulgaris HOM05D003485 ORTHO05D004004 1.4e-30 138.3 501 28.5
Glyma.13G152100 Glycine max HOM05D003485 ORTHO05D004004 1.8e-30 137.9 508 28.3
Lalb_Chr02g0155221 Lupinus albus HOM05D003485 ORTHO05D004004 3.1e-30 137.1 528 29.0
Nitab4.5_0004489g0010 Nicotiana tabacum HOM05D003485 ORTHO05D004004 4.1e-30 136.7 489 31.7
VMungo0720G2646 Vigna mungo HOM05D003485 ORTHO05D004004 4.1e-30 136.7 482 28.0
Cc06_g05360 Coffea canephora HOM05D003485 ORTHO05D004004 9.1e-30 135.6 562 30.1
Sc02g0001100 Simmondsia chinensis HOM05D003485 ORTHO05D004004 4.5e-29 133.3 538 29.0
Lsat_1_v5_gn_1_48761 Lactuca sativa HOM05D003485 ORTHO05D004004 5.9e-29 132.9 498 30.7
Lalb_Chr20g0112141 Lupinus albus HOM05D003485 ORTHO05D004004 7.7e-29 132.5 514 29.4
Actinidia10397 Actinidia chinensis HOM05D003485 ORTHO05D004004 5.0e-28 129.8 511 32.3
TAR623G1754 Trochodendron aralioides HOM05D003485 ORTHO05D004004 5.0e-28 129.8 527 30.4
Sed0007624 Sechium edule HOM05D003485 ORTHO05D004004 3.2e-27 127.1 426 31.5
vmacro07380 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 9.4e-27 125.6 474 31.2
Lalb_Chr01g0018291 Lupinus albus HOM05D003485 ORTHO05D004004 3.6e-26 123.6 524 28.6
Ah.08g210850 Amaranthus hybridus HOM05D003485 ORTHO05D004004 8.0e-26 122.5 526 27.9
COL.COLO4_29799 Corchorus olitorius HOM05D003485 ORTHO05D004004 8.0e-26 122.5 460 29.6
Oeu040808.2 Olea europaea HOM05D003485 ORTHO05D004004 1.0e-25 122.1 487 29.6
CARHR209630 Cardamine hirsuta HOM05D003485 ORTHO05D004004 5.2e-25 119.8 365 31.8
HanXRQChr11g0351281 Helianthus annuus HOM05D003485 ORTHO05D004004 8.8e-25 119.0 473 29.2
Eucgr.A01536 Eucalyptus grandis HOM05D003485 ORTHO05D004004 2.2e-23 114.4 503 28.2
Dinv19839 Davidia involucrata HOM05D003485 ORTHO05D004004 2.8e-23 114.0 276 36.2
Eucgr.K02068 Eucalyptus grandis HOM05D003485 ORTHO05D004004 6.3e-23 112.8 472 29.9
Gohir.D01G128400 Gossypium hirsutum HOM05D003485 ORTHO05D004004 8.3e-23 112.5 452 30.1
PSO384G0133 Papaver somniferum HOM05D003485 ORTHO05D004004 8.3e-23 112.5 556 26.3
Rhsim03G0079600 Rhododendron simsii HOM05D003485 ORTHO05D004004 1.1e-22 112.1 495 28.9
Psat6g080680 Pisum sativum HOM05D003485 ORTHO05D004004 1.4e-22 111.7 349 31.2
Gorai.002G159100 Gossypium raimondii HOM05D003485 ORTHO05D004004 2.4e-22 110.9 452 30.5
TPR.G25373 Trifolium pratense HOM05D003485 ORTHO05D004004 2.4e-22 110.9 285 34.7
Gohir.A01G138700 Gossypium hirsutum HOM05D003485 ORTHO05D004004 5.4e-22 109.8 459 29.2
DCAR_020774 Daucus carota HOM05D003485 ORTHO05D004004 1.6e-21 108.2 516 28.3
PSO339G0389 Papaver somniferum HOM05D003485 ORTHO05D004004 1.6e-21 108.2 554 26.0
Sopen09g003950 Solanum pennellii HOM05D003485 ORTHO05D004004 1.6e-21 108.2 379 30.1
Migut.L01764 Erythranthe guttata HOM05D003485 ORTHO05D004004 2.0e-21 107.8 434 27.4
Nn2g14048 Nelumbo nucifera HOM05D003485 ORTHO05D004004 3.5e-21 107.1 338 33.1
Actinidia08428 Actinidia chinensis HOM05D003485 ORTHO05D004004 4.5e-21 106.7 460 27.8
Rhsim04G0135000 Rhododendron simsii HOM05D003485 ORTHO05D004004 1.7e-20 104.8 590 27.8
Aqoxy2G01359 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 8.6e-20 102.4 567 26.3
Migut.J00977 Erythranthe guttata HOM05D003485 ORTHO05D004004 2.5e-19 100.9 264 33.3
SGA_v2.0_scaffold184G39942 Striga asiatica HOM05D003485 ORTHO05D004004 3.3e-19 100.5 358 31.0
arahy.Tifrunner.gnm1.ann1.LG3GGS Arachis hypogaea HOM05D003485 ORTHO05D004004 5.5e-19 99.8 521 26.1
arahy.Tifrunner.gnm1.ann1.W633S9 Arachis hypogaea HOM05D003485 ORTHO05D004004 5.5e-19 99.8 521 26.1
Psat3g035000 Pisum sativum HOM05D003485 ORTHO05D004004 1.6e-18 98.2 281 34.2
Aqoxy4G02862 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 2.1e-18 97.8 510 28.2
MBI17_g01908_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 2.1e-18 97.8 523 28.3
Lj2A130G48 Lonicera japonica HOM05D003485 ORTHO05D004004 2.8e-18 97.4 390 32.8
Ca_08971_v3 Cicer arietinum L. HOM05D003485 ORTHO05D004004 1.2e-16 92.0 285 34.0
Actinidia31285 Actinidia chinensis HOM05D003485 ORTHO05D004004 2.6e-16 90.9 331 30.5
SalBow5G3755 Salvia bowleyana HOM05D003485 ORTHO05D004004 7.5e-16 89.4 436 28.2
ECA248G2160 Erigeron canadensis HOM05D003485 ORTHO05D004004 2.9e-15 87.4 379 29.6
Nn6g35018 Nelumbo nucifera HOM05D003485 ORTHO05D004004 3.7e-15 87.0 261 31.8
Carub.0006s0258 Capsella rubella HOM05D003485 ORTHO05D004004 6.3e-15 86.3 282 31.6
MBI01_g46563_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 5.4e-14 83.2 154 36.4
ECA238G4534 Erigeron canadensis HOM05D003485 ORTHO05D004004 1.3e-12 78.6 263 31.6
AUR62043111 Chenopodium quinoa HOM05D003485 ORTHO05D004004 2.3e-12 77.8 212 28.8
unitig_578.g15766 Utricularia gibba HOM05D003485 ORTHO05D004004 6.6e-12 76.3 313 27.2
MELO3C000161.2 Cucumis melo HOM05D003485 ORTHO05D004004 4.3e-11 73.6 193 37.3
DCAR_007743 Daucus carota HOM05D003485 ORTHO05D004004 1.2e-10 72.0 440 25.2
HanXRQChr11g0351271 Helianthus annuus HOM05D003485 ORTHO05D004004 2.8e-10 70.9 224 29.0
unitig_26.g9244 Utricularia gibba HOM05D003485 ORTHO05D004004 2.8e-10 70.9 316 28.8
Dinv21244 Davidia involucrata HOM05D003485 ORTHO05D004004 6.2e-10 69.7 288 31.9
SGA_v2.0_scaffold40G15384 Striga asiatica HOM05D003485 ORTHO05D004004 1.0e-09 68.9 278 28.4
MBI01_g18815_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 1.8e-09 68.2 272 26.8
vmacro08822 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 7.0e-06 56.2 302 26.8


User provided reference genes

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