Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03835 Brassica carinata HOM05D006118 ORTHO05D007750 3.7e-182 641.3 307 100.0
BcaB08g36375 Brassica carinata HOM05D006118 ORTHO05D007750 5.0e-171 604.4 307 95.4
A06p04570 Brassica napus HOM05D006118 ORTHO05D007750 1.0e-91 340.9 193 87.0
BraA06t23661Z Brassica rapa HOM05D006118 ORTHO05D007750 1.0e-91 340.9 193 87.0
BcaB07g33772 Brassica carinata HOM05D006118 ORTHO05D007750 1.3e-91 340.5 193 87.0
BcaC08g43024 Brassica carinata HOM05D006118 ORTHO05D007750 3.0e-91 339.3 193 86.5
C06p02770 Brassica napus HOM05D006118 ORTHO05D007750 3.0e-91 339.3 193 86.5
BolC6t35406H Brassica oleracea HOM05D006118 ORTHO05D007750 3.0e-91 339.3 193 86.5
Carub.0001s3740 Capsella rubella HOM05D006118 ORTHO05D007750 1.9e-90 336.7 193 86.0
CARHR037890 Cardamine hirsuta HOM05D006118 ORTHO05D007750 2.5e-90 336.3 193 85.5
AT1G48270 Arabidopsis thaliana HOM05D006118 ORTHO05D007750 7.4e-90 334.7 193 85.5
Sp1g35230 Schrenkiella parvula HOM05D006118 ORTHO05D007750 9.6e-90 334.3 193 85.5
AL1G54870 Arabidopsis lyrata HOM05D006118 ORTHO05D007750 2.1e-89 333.2 193 85.0
Thhalv10011644m.g Eutrema salsugineum HOM05D006118 ORTHO05D007750 2.8e-89 332.8 193 85.0
Ciclev10005468m.g Citrus clementina HOM05D006118 ORTHO05D007750 6.2e-81 305.1 191 78.5
Atru.chr4.3167 Acer truncatum HOM05D006118 ORTHO05D007750 4.5e-79 298.9 192 78.1
Cpa.g.sc146.16 Carica papaya HOM05D006118 ORTHO05D007750 1.3e-78 297.4 191 76.4
FvH4_2g30820 Fragaria vesca HOM05D006118 ORTHO05D007750 6.5e-78 295.0 190 75.8
FAN15G2451 Fragaria x ananassa HOM05D006118 ORTHO05D007750 6.5e-78 295.0 190 75.8
FAN20G1786 Fragaria x ananassa HOM05D006118 ORTHO05D007750 6.5e-78 295.0 190 75.8
Ca_13095_v3 Cicer arietinum L. HOM05D006118 ORTHO05D007750 8.4e-78 294.7 193 75.6
arahy.Tifrunner.gnm1.ann1.ZI0SGT Arachis hypogaea HOM05D006118 ORTHO05D007750 5.5e-77 292.0 191 75.9
RcHm_v2.0_Chr6g0312021 Rosa chinensis HOM05D006118 ORTHO05D007750 5.5e-77 292.0 190 74.7
Phvul.001G044800 Phaseolus vulgaris HOM05D006118 ORTHO05D007750 7.1e-77 291.6 193 74.6
Lj5g0024511 Lotus japonicus HOM05D006118 ORTHO05D007750 1.2e-76 290.8 191 74.9
FAN27G1493 Fragaria x ananassa HOM05D006118 ORTHO05D007750 1.6e-76 290.4 190 74.7
Glyma.14G107200 Glycine max HOM05D006118 ORTHO05D007750 2.1e-76 290.0 193 73.6
Glyma.17G219300 Glycine max HOM05D006118 ORTHO05D007750 3.5e-76 289.3 193 74.1
Prupe.1G402500 Prunus persica HOM05D006118 ORTHO05D007750 3.5e-76 289.3 191 72.8
VMungo0647G1968 Vigna mungo HOM05D006118 ORTHO05D007750 1.0e-75 287.7 190 75.3
Gohir.A02G058900 Gossypium hirsutum HOM05D006118 ORTHO05D007750 1.3e-75 287.3 187 75.9
Gohir.D02G064600 Gossypium hirsutum HOM05D006118 ORTHO05D007750 1.3e-75 287.3 187 75.9
Gorai.005G073100 Gossypium raimondii HOM05D006118 ORTHO05D007750 1.8e-75 287.0 187 75.4
CiPaw.16G067300 Carya illinoinensis HOM05D006118 ORTHO05D007750 3.9e-75 285.8 191 74.9
MD08G1073200 Malus domestica HOM05D006118 ORTHO05D007750 3.9e-75 285.8 190 72.6
Thecc.04G313700 Theobroma cacao HOM05D006118 ORTHO05D007750 3.9e-75 285.8 187 75.4
Duzib151G0955 Durio zibethinus HOM05D006118 ORTHO05D007750 6.7e-75 285.0 181 76.8
arahy.Tifrunner.gnm1.ann1.Z643MN Arachis hypogaea HOM05D006118 ORTHO05D007750 1.5e-74 283.9 201 72.1
TAR624G0180 Trochodendron aralioides HOM05D006118 ORTHO05D007750 1.9e-74 283.5 191 74.3
CANSAT25G1353 Cannabis sativa HOM05D006118 ORTHO05D007750 3.3e-74 282.7 189 75.7
PSO063G1448 Papaver somniferum HOM05D006118 ORTHO05D007750 3.3e-74 282.7 188 73.9
PSO421G0086 Papaver somniferum HOM05D006118 ORTHO05D007750 3.3e-74 282.7 188 73.9
MD15G1048100 Malus domestica HOM05D006118 ORTHO05D007750 4.3e-74 282.3 190 72.6
GSVIVG01035487001 Vitis vinifera HOM05D006118 ORTHO05D007750 5.7e-74 282.0 194 73.7
PGR142G4277 Punica granatum HOM05D006118 ORTHO05D007750 7.4e-74 281.6 189 73.0
THA.LOC104824720 Tarenaya hassleriana HOM05D006118 ORTHO05D007750 1.6e-73 280.4 193 74.6
Lalb_Chr24g0393681 Lupinus albus HOM05D006118 ORTHO05D007750 4.8e-73 278.9 187 72.7
Migut.E01785 Erythranthe guttata HOM05D006118 ORTHO05D007750 1.1e-72 277.7 192 72.9
PGSC0003DMG402012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 1.4e-72 277.3 192 72.4
Sabra08G0153100 Salix brachista HOM05D006118 ORTHO05D007750 1.8e-72 276.9 193 73.6
Solyc08g061260.4 Solanum lycopersicum HOM05D006118 ORTHO05D007750 1.8e-72 276.9 192 72.4
Sopen08g016640 Solanum pennellii HOM05D006118 ORTHO05D007750 1.8e-72 276.9 192 72.4
Aqoxy7G01030 Aquilegia oxysepala HOM05D006118 ORTHO05D007750 9.0e-72 274.6 189 72.0
Eucgr.C00739 Eucalyptus grandis HOM05D006118 ORTHO05D007750 1.5e-71 273.9 187 72.2
Hma1.2p1_0641F.1_g194200 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 1.5e-71 273.9 192 71.9
Cc08_g01010 Coffea canephora HOM05D006118 ORTHO05D007750 4.5e-71 272.3 191 72.3
MELO3C016921.2 Cucumis melo HOM05D006118 ORTHO05D007750 4.5e-71 272.3 191 71.2
CsaV3_4G036130 Cucumis sativus L. HOM05D006118 ORTHO05D007750 7.6e-71 271.6 191 71.2
HanXRQChr09g0261891 Helianthus annuus HOM05D006118 ORTHO05D007750 2.2e-70 270.0 195 69.2
MSTRG.14088 Avicennia marina HOM05D006118 ORTHO05D007750 5.0e-70 268.9 192 69.8
CSS0045297 Camellia sinensis var. sinensis HOM05D006118 ORTHO05D007750 5.0e-70 268.9 192 70.8
SGA_v2.0_scaffold163G37995 Striga asiatica HOM05D006118 ORTHO05D007750 6.5e-70 268.5 200 69.0
ClCG05G015850 Citrullus lanatus HOM05D006118 ORTHO05D007750 2.5e-69 266.5 191 69.6
Rhsim13G0216900 Rhododendron simsii HOM05D006118 ORTHO05D007750 9.3e-69 264.6 210 64.8
Sed0026686 Sechium edule HOM05D006118 ORTHO05D007750 9.3e-69 264.6 184 69.6
Lsat_1_v5_gn_8_70541 Lactuca sativa HOM05D006118 ORTHO05D007750 1.6e-68 263.8 233 60.5
TPR.G38901 Trifolium pratense HOM05D006118 ORTHO05D007750 4.6e-68 262.3 187 70.1
DCAR_003726 Daucus carota HOM05D006118 ORTHO05D007750 6.1e-68 261.9 204 65.7
Actinidia01325 Actinidia chinensis HOM05D006118 ORTHO05D007750 1.9e-66 256.9 192 68.2
ATR0598G044 Amborella trichopoda HOM05D006118 ORTHO05D007750 5.7e-66 255.4 192 66.7
Manes.03G212200 Manihot esculenta HOM05D006118 ORTHO05D007750 3.7e-65 252.7 191 68.6
Medtr1g015010 Medicago truncatula HOM05D006118 ORTHO05D007750 1.2e-63 247.7 181 70.7
Lj7A209G43 Lonicera japonica HOM05D006118 ORTHO05D007750 2.0e-63 246.9 238 57.6
Psat6g023080 Pisum sativum HOM05D006118 ORTHO05D007750 2.6e-63 246.5 194 68.0
SalBow1G5335 Salvia bowleyana HOM05D006118 ORTHO05D007750 1.7e-62 243.8 248 54.4
TWI53G1421 Tripterygium wilfordii HOM05D006118 ORTHO05D007750 3.8e-62 242.7 190 66.8
Haze_18321 Corylus avellana HOM05D006118 ORTHO05D007750 5.0e-62 242.3 250 56.0
Aa31LG10G5490 Aethionema arabicum HOM05D006118 ORTHO05D007750 6.5e-62 241.9 193 67.4
COL.COLO4_34509 Corchorus olitorius HOM05D006118 ORTHO05D007750 6.5e-62 241.9 229 57.2
Nitab4.5_0001576g0100 Nicotiana tabacum HOM05D006118 ORTHO05D007750 1.4e-59 234.2 204 63.2
BcaB03g11812 Brassica carinata HOM05D006118 ORTHO05D094040 6.7e-59 231.9 132 87.1
vmacro04115 Vaccinium macrocarpon HOM05D006118 ORTHO05D007750 2.6e-58 229.9 259 51.0
PGSC0003DMG401012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 3.7e-57 226.1 156 73.1
Sc06g0000090 Simmondsia chinensis HOM05D006118 ORTHO05D007750 4.8e-57 225.7 189 61.9
Os06g0199800 Oryza sativa ssp. japonica HOM05D006118 ORTHO05D007750 8.2e-57 224.9 183 59.6
CDE06G0461 Ceratophyllum demersum HOM05D006118 ORTHO05D007750 1.1e-56 224.6 183 62.8
AagrBONN_evm.TU.Sc2ySwM_228.1339 Anthoceros agrestis HOM05D006118 ORTHO05D007750 1.2e-55 221.1 189 60.8
FAN24G3410 Fragaria x ananassa HOM05D006118 ORTHO05D007750 5.0e-54 215.7 126 77.0
Mapoly0073s0070 Marchantia polymorpha HOM05D006118 ORTHO05D007750 7.9e-52 208.4 198 55.6
MD15G1048300 Malus domestica HOM05D006118 ORTHO05D007750 1.1e-50 204.5 193 57.0
Dinv41849 Davidia involucrata HOM05D006118 ORTHO05D007750 1.5e-50 204.1 138 71.0
Pp3c15_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 1.5e-50 204.1 229 49.3
Hma1.2p1_0641F.1_g194210 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 2.0e-50 203.8 128 74.2
SMO119G0499 Selaginella moellendorffii HOM05D006118 ORTHO05D007750 2.0e-50 203.8 183 56.3
ECA236G0212 Erigeron canadensis HOM05D006118 ORTHO05D007750 2.6e-50 203.4 141 69.5
Pp3c9_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 2.6e-50 203.4 229 49.8
Potri.008G206000 Populus trichocarpa HOM05D006118 ORTHO05D007750 1.3e-49 201.1 165 64.2
Peaxi162Scf00486g00116 Petunia axillaris HOM05D006118 ORTHO05D007750 1.7e-49 200.7 139 72.7
Oeu036787.2 Olea europaea HOM05D006118 ORTHO05D007750 8.2e-49 198.4 166 62.0
BcaB01g01553 Brassica carinata HOM05D006118 ORTHO05D007750 1.4e-48 197.6 103 88.3
Ah.12g061330 Amaranthus hybridus HOM05D006118 ORTHO05D007750 5.3e-48 195.7 162 61.1
BcaB04g18078 Brassica carinata HOM05D006118 ORTHO05D095248 2.3e-43 180.3 97 91.8
AUR62020280 Chenopodium quinoa HOM05D006118 ORTHO05D007750 2.3e-43 180.3 174 58.0
EL10Ac2g02406 Beta vulgaris HOM05D006118 ORTHO05D007750 1.2e-42 177.9 148 61.5
Oeu024208.1 Olea europaea HOM05D006118 ORTHO05D007750 2.0e-42 177.2 113 74.3
Zm00001eb278600 Zea mays HOM05D006118 ORTHO05D007750 3.8e-38 162.9 118 61.9
BcaB07g32513 Brassica carinata HOM05D006118 ORTHO05D007750 4.2e-37 159.5 80 87.5
Hund25545 Selenicereus undatus HOM05D006118 ORTHO05D007750 4.7e-36 156.0 183 51.4
Lalb_Chr23g0268011 Lupinus albus HOM05D006118 ORTHO05D007750 1.8e-35 154.1 101 71.3
CBR_g36835 Chara braunii HOM05D006118 ORTHO05D007750 2.2e-30 137.1 140 48.6
HPP92_016236 Vanilla planifolia HOM05D006118 ORTHO05D007750 2.9e-30 136.7 189 43.9
AUR62037725 Chenopodium quinoa HOM05D006118 ORTHO05D007750 1.1e-29 134.8 121 57.9
ATR0684G160 Amborella trichopoda HOM05D006118 ORTHO05D007750 9.2e-24 115.2 86 64.0
arahy.Tifrunner.gnm1.ann1.C1NZN8 Arachis hypogaea HOM05D006118 ORTHO05D007750 6.6e-22 109.0 205 42.0
BcaB01g01552 Brassica carinata HOM05D006118 ORTHO05D007750 2.8e-20 103.6 54 96.3
Nitab4.5_0009849g0030 Nicotiana tabacum HOM05D006118 ORTHO05D007750 9.2e-16 88.6 189 37.6
PRCOL_00004868 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 2.7e-15 87.0 183 35.0
BcaC05g26727 Brassica carinata HOM05D010730 ORTHO05D013750 9.8e-10 68.6 97 42.3
arahy.Tifrunner.gnm1.ann1.K6H74S Arachis hypogaea HOM05D006118 ORTHO05D007750 3.5e-07 60.1 38 71.1


User provided reference genes

Program Settings