Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03819 Brassica carinata HOM05D007554 ORTHO05D009569 5.4e-174 614.4 343 100.0
BraA03t11273Z Brassica rapa HOM05D007554 ORTHO05D009569 2.4e-126 456.1 345 76.5
A03p20230 Brassica napus HOM05D007554 ORTHO05D009569 1.8e-121 439.9 370 71.4
BcaC01g05644 Brassica carinata HOM05D007554 ORTHO05D009569 1.3e-114 417.2 317 79.2
BolC3t14766H Brassica oleracea HOM05D007554 ORTHO05D009569 2.1e-114 416.4 318 77.0
C03p23720 Brassica napus HOM05D007554 ORTHO05D009569 3.1e-113 412.5 318 79.2
A05p09220 Brassica napus HOM05D007554 ORTHO05D009569 1.5e-91 340.5 408 57.1
BcaB02g09343 Brassica carinata HOM05D007554 ORTHO05D009569 1.8e-89 333.6 422 54.7
BcaC02g11778 Brassica carinata HOM05D007554 ORTHO05D009569 3.1e-89 332.8 401 55.9
C04p11490 Brassica napus HOM05D007554 ORTHO05D009569 3.1e-89 332.8 401 55.9
BolC4t22799H Brassica oleracea HOM05D007554 ORTHO05D009569 3.1e-89 332.8 401 55.9
AL4G32830 Arabidopsis lyrata HOM05D007554 ORTHO05D009569 9.1e-89 331.3 399 54.9
BraA05t19878Z Brassica rapa HOM05D007554 ORTHO05D009569 1.5e-88 330.5 408 56.4
Thhalv10017640m.g Eutrema salsugineum HOM05D007554 ORTHO05D009569 2.0e-88 330.1 306 62.7
CARHR130930 Cardamine hirsuta HOM05D007554 ORTHO05D009569 1.0e-84 317.8 399 53.1
Sp4g18930 Schrenkiella parvula HOM05D007554 ORTHO05D009569 3.7e-82 309.3 367 54.0
Carub.0004s1847 Capsella rubella HOM05D007554 ORTHO05D009569 2.4e-81 306.6 401 48.9
AT2G36650 Arabidopsis thaliana HOM05D007554 ORTHO05D009569 1.5e-78 297.4 334 60.5
Aa31LG5G21850 Aethionema arabicum HOM05D007554 ORTHO05D009569 5.7e-59 232.3 387 44.7
THA.LOC104823478 Tarenaya hassleriana HOM05D007554 ORTHO05D009569 1.5e-46 191.0 410 35.9
Atru.chr8.1675 Acer truncatum HOM05D007554 ORTHO05D009569 8.9e-28 128.6 435 27.8
PGR142G2625 Punica granatum HOM05D007554 ORTHO05D009569 7.6e-27 125.6 401 27.4
Manes.09G058083 Manihot esculenta HOM05D007554 ORTHO05D009569 2.4e-25 120.6 421 26.1
FAN05G0950 Fragaria x ananassa HOM05D000031 ORTHO05D001864 7.1e-25 119.0 315 29.2
FAN05G4577 Fragaria x ananassa HOM05D007554 ORTHO05D009569 7.1e-25 119.0 315 29.2
FAN09G2175 Fragaria x ananassa HOM05D000031 ORTHO05D001864 4.6e-24 116.3 315 28.6
QL07p041193 Quercus lobata HOM05D007554 ORTHO05D009569 6.0e-24 115.9 321 27.7
FvH4_6g17340 Fragaria vesca HOM05D007554 ORTHO05D009569 7.8e-24 115.5 315 28.3
FAN05G5377 Fragaria x ananassa HOM05D007554 ORTHO05D009569 1.3e-23 114.8 315 28.6
Cpa.g.sc5.117 Carica papaya HOM05D007554 ORTHO05D009569 3.0e-23 113.6 318 26.1
Eucgr.K02413 Eucalyptus grandis HOM05D007554 ORTHO05D009569 3.0e-23 113.6 397 28.0
Ciclev10011754m.g Citrus clementina HOM05D007554 ORTHO05D009569 3.9e-23 113.2 439 25.5
TAR623G1240 Trochodendron aralioides HOM05D007554 ORTHO05D009569 5.1e-23 112.8 328 26.8
Thecc.05G076700 Theobroma cacao HOM05D007554 ORTHO05D009569 1.9e-22 110.9 322 27.6
Gohir.D09G139300 Gossypium hirsutum HOM05D007554 ORTHO05D009569 7.3e-22 109.0 321 27.4
Gorai.006G159800 Gossypium raimondii HOM05D007554 ORTHO05D009569 7.3e-22 109.0 321 27.4
Lsat_1_v5_gn_2_24301 Lactuca sativa HOM05D007554 ORTHO05D009569 1.6e-21 107.8 304 28.9
Gohir.A09G143100 Gossypium hirsutum HOM05D007554 ORTHO05D009569 2.1e-21 107.5 321 26.8
Lj2A125T59 Lonicera japonica HOM05D007554 ORTHO05D009569 4.8e-21 106.3 299 28.4
GSVIVG01033729001 Vitis vinifera HOM05D007554 ORTHO05D009569 4.8e-21 106.3 235 31.1
HanXRQChr06g0181651 Helianthus annuus HOM05D007554 ORTHO05D009569 6.2e-21 105.9 301 27.9
VMungo0720G0941 Vigna mungo HOM05D007554 ORTHO05D009569 6.9e-20 102.4 393 27.0
ECA238G1996 Erigeron canadensis HOM05D001775 ORTHO05D008700 2.0e-19 100.9 247 31.6
Potri.005G098400 Populus trichocarpa HOM05D007554 ORTHO05D009569 2.0e-19 100.9 437 23.3
MD12G1101400 Malus domestica HOM05D007554 ORTHO05D009569 2.6e-19 100.5 320 27.5
Glyma.03G188800 Glycine max HOM05D007554 ORTHO05D009569 4.4e-19 99.8 309 27.5
Prupe.7G122100 Prunus persica HOM05D007554 ORTHO05D009569 7.6e-19 99.0 231 28.6
Duzib106G2002 Durio zibethinus HOM05D007554 ORTHO05D009569 9.9e-19 98.6 227 30.0
PGSC0003DMG401012981 Solanum tuberosum HOM05D007554 ORTHO05D009569 3.8e-18 96.7 250 27.2
TWI74G1006 Tripterygium wilfordii HOM05D007554 ORTHO05D009569 3.8e-18 96.7 430 22.3
CSS0026822 Camellia sinensis var. sinensis HOM05D007554 ORTHO05D009569 4.9e-18 96.3 233 29.6
COL.COLO4_22265 Corchorus olitorius HOM05D007554 ORTHO05D008700 6.4e-18 95.9 323 25.1
BcaC02g11783 Brassica carinata HOM05D007554 ORTHO05D009569 8.4e-18 95.5 141 45.4
RcHm_v2.0_Chr3g0471481 Rosa chinensis HOM05D007554 ORTHO05D009569 8.4e-18 95.5 309 27.2
CSS0026453 Camellia sinensis var. sinensis HOM05D007554 ORTHO05D009569 1.9e-17 94.4 233 28.3
Peaxi162Scf01063g00111 Petunia axillaris HOM05D007554 ORTHO05D009569 3.2e-17 93.6 324 24.1
CiPaw.09G006000 Carya illinoinensis HOM05D007554 ORTHO05D009569 7.1e-17 92.4 281 24.6
Cc06_g04860 Coffea canephora HOM05D007554 ORTHO05D009569 9.3e-17 92.0 344 24.4
Glyma.10G063900 Glycine max HOM05D007554 ORTHO05D009569 9.3e-17 92.0 283 27.2
Solyc09g008660.3 Solanum lycopersicum HOM05D007554 ORTHO05D009569 9.3e-17 92.0 251 27.9
Glyma.13G148500 Glycine max HOM05D007554 ORTHO05D009569 1.6e-16 91.3 348 25.0
Medtr1g061840 Medicago truncatula HOM05D007554 ORTHO05D009569 7.9e-16 89.0 238 27.3
vmacro08807 Vaccinium macrocarpon HOM05D007554 ORTHO05D009569 1.7e-15 87.8 329 26.7
FAN14G0141 Fragaria x ananassa HOM05D000031 ORTHO05D001864 2.3e-15 87.4 200 29.5
Phvul.001G184200 Phaseolus vulgaris HOM05D007554 ORTHO05D009569 3.0e-15 87.0 322 25.5
Sed0015840 Sechium edule HOM05D000031 ORTHO05D001864 6.6e-15 85.9 252 27.4
DCAR_015020 Daucus carota HOM05D007554 ORTHO05D009569 1.9e-14 84.3 335 23.9
Phvul.007G225500 Phaseolus vulgaris HOM05D007554 ORTHO05D009569 5.6e-14 82.8 241 27.4
Lj1g0019279 Lotus japonicus HOM05D007554 ORTHO05D009569 9.6e-14 82.0 233 26.6
Sabra05G0080800 Salix brachista HOM05D007554 ORTHO05D009569 4.8e-13 79.7 243 25.9
Cfa016496 Carpinus fangiana HOM05D001775 ORTHO05D008700 1.1e-12 78.6 319 24.1
Ca_11566_v3 Cicer arietinum L. HOM05D007554 ORTHO05D008700 1.1e-12 78.6 195 26.2
MELO3C009416.2 Cucumis melo HOM05D007554 ORTHO05D009569 1.4e-12 78.2 257 26.1
Lj5g0018631 Lotus japonicus HOM05D007554 ORTHO05D009569 1.8e-12 77.8 238 24.8
CAN.G1830.10 Capsicum annuum HOM05D007554 ORTHO05D009569 2.4e-12 77.4 260 25.8
CsaV3_3G036620 Cucumis sativus L. HOM05D007554 ORTHO05D009569 6.9e-12 75.9 263 25.5
Glyma.19G189000 Glycine max HOM05D007554 ORTHO05D009569 1.5e-11 74.7 322 23.6
Psat0s3550g0120 Pisum sativum HOM05D007554 ORTHO05D009569 1.5e-11 74.7 338 25.7
Ah.15g091360 Amaranthus hybridus HOM05D007554 ORTHO05D009569 2.6e-11 73.9 320 24.4
TPR.G30363 Trifolium pratense HOM05D007554 ORTHO05D009569 3.4e-11 73.6 328 23.2
Aqoxy2G01532 Aquilegia oxysepala HOM05D007554 ORTHO05D009569 5.8e-11 72.8 230 25.7
arahy.Tifrunner.gnm1.ann1.WUL3RA Arachis hypogaea HOM05D007554 ORTHO05D009569 5.8e-11 72.8 323 25.7
Nn2g13923 Nelumbo nucifera HOM05D007554 ORTHO05D009569 2.2e-10 70.9 330 24.8
EL10Ac7g16728 Beta vulgaris HOM05D007554 ORTHO05D009569 6.4e-10 69.3 398 21.1
Sc07g0004650 Simmondsia chinensis HOM05D007554 ORTHO05D009569 1.1e-09 68.6 300 23.7
ClCG10G019580 Citrullus lanatus HOM05D000031 ORTHO05D001864 5.4e-09 66.2 189 25.9
Dinv35842 Davidia involucrata HOM05D007554 ORTHO05D009569 7.1e-09 65.9 326 23.3
arahy.Tifrunner.gnm1.ann1.TQ9G2A Arachis hypogaea HOM05D007554 ORTHO05D009569 9.3e-09 65.5 223 28.3
Nitab4.5_0004281g0070 Nicotiana tabacum HOM05D007554 ORTHO05D009569 1.2e-08 65.1 208 25.0
PSO339G0406 Papaver somniferum HOM05D007554 ORTHO05D009569 1.2e-08 65.1 160 25.0
Actinidia21725 Actinidia chinensis HOM05D000566 ORTHO05D004798 2.1e-08 64.3 250 24.4
Rhsim08G0228800 Rhododendron simsii HOM05D000566 ORTHO05D004798 2.1e-08 64.3 232 25.9
Ah.01g005910 Amaranthus hybridus HOM05D000566 ORTHO05D004798 3.5e-08 63.5 213 26.3
Haze_19498 Corylus avellana HOM05D000031 ORTHO05D001864 4.6e-08 63.2 253 23.3
AUR62036291 Chenopodium quinoa HOM05D000566 ORTHO05D000686 7.9e-08 62.4 311 23.5
AUR62044070 Chenopodium quinoa HOM05D007554 ORTHO05D009569 7.9e-08 62.4 303 21.8
VMungo0331G1583 Vigna mungo HOM05D000566 ORTHO05D004798 7.9e-08 62.4 239 27.2
MSTRG.11016 Avicennia marina HOM05D000566 ORTHO05D004798 1.0e-07 62.0 264 25.0
vmacro18840 Vaccinium macrocarpon HOM05D000566 ORTHO05D004798 1.0e-07 62.0 232 23.7
Phvul.007G101700 Phaseolus vulgaris HOM05D000566 ORTHO05D000686 1.3e-07 61.6 239 25.9
Ca_01174_v3 Cicer arietinum L. HOM05D000566 ORTHO05D004798 1.8e-07 61.2 220 24.5
Nitab4.5_0006709g0010 Nicotiana tabacum HOM05D007554 ORTHO05D009569 1.8e-07 61.2 225 24.9
RcHm_v2.0_Chr2g0141111 Rosa chinensis HOM05D000566 ORTHO05D004798 1.8e-07 61.2 256 24.6
Sopen09g003460 Solanum pennellii HOM05D007554 ORTHO05D009569 1.8e-07 61.2 212 24.5
Gohir.D06G198400 Gossypium hirsutum HOM05D000566 ORTHO05D004798 5.1e-07 59.7 255 25.5
Hma1.2p1_1578F.1_g291800 Hydrangea macrophylla HOM05D007554 ORTHO05D009569 5.1e-07 59.7 232 24.6
Lalb_Chr01g0018501 Lupinus albus HOM05D007554 ORTHO05D009569 6.7e-07 59.3 355 18.9
Prupe.3G056400 Prunus persica HOM05D000566 ORTHO05D004798 6.7e-07 59.3 249 24.9
AUR62040182 Chenopodium quinoa HOM05D007554 ORTHO05D009569 8.7e-07 58.9 229 22.7
Ca_23280_v3 Cicer arietinum L. HOM05D000566 ORTHO05D004798 8.7e-07 58.9 257 24.1
Glyma.08G199600 Glycine max HOM05D000566 ORTHO05D004798 8.7e-07 58.9 233 27.0
PSO801G0154 Papaver somniferum HOM05D007554 ORTHO05D009569 8.7e-07 58.9 218 21.6
Gorai.009G138100 Gossypium raimondii HOM05D000566 ORTHO05D004798 1.1e-06 58.5 289 24.9
Lsat_1_v5_gn_1_36681 Lactuca sativa HOM05D000566 ORTHO05D004798 1.1e-06 58.5 241 24.5
HPP92_003963 Vanilla planifolia HOM05D000566 ORTHO05D004798 1.1e-06 58.5 235 24.3
TPR.G15135 Trifolium pratense HOM05D000566 ORTHO05D004798 1.5e-06 58.2 254 24.4
arahy.Tifrunner.gnm1.ann1.561HRF Arachis hypogaea HOM05D000566 ORTHO05D004798 1.9e-06 57.8 241 24.5
DCAR_007592 Daucus carota HOM05D000566 ORTHO05D004798 1.9e-06 57.8 249 25.3
Oeu026720.1 Olea europaea HOM05D000566 ORTHO05D004798 1.9e-06 57.8 262 24.8
EL10Ac5g11774 Beta vulgaris HOM05D000566 ORTHO05D000686 2.5e-06 57.4 302 24.2
AUR62039739 Chenopodium quinoa HOM05D000566 ORTHO05D000686 2.5e-06 57.4 311 24.1
Gorai.010G231300 Gossypium raimondii HOM05D000566 ORTHO05D004798 2.5e-06 57.4 256 25.8
Lalb_Chr04g0263011 Lupinus albus HOM05D000566 ORTHO05D004798 3.3e-06 57.0 239 24.7
TPR.G6520 Trifolium pratense HOM05D000566 ORTHO05D004798 3.3e-06 57.0 248 25.0
VMungo1080G1237 Vigna mungo HOM05D000566 ORTHO05D004798 3.3e-06 57.0 257 24.5
VMungo1383G1881 Vigna mungo HOM05D007554 ORTHO05D009569 3.3e-06 57.0 322 23.3
Aa31LG2G6620 Aethionema arabicum HOM05D000566 ORTHO05D000686 4.3e-06 56.6 315 22.9
AUR62022243 Chenopodium quinoa HOM05D000566 ORTHO05D004798 4.3e-06 56.6 240 24.2
Lsat_1_v5_gn_4_96600 Lactuca sativa HOM05D000566 ORTHO05D004798 4.3e-06 56.6 240 25.8
MD09G1199900 Malus domestica HOM05D000566 ORTHO05D004798 4.3e-06 56.6 257 25.3
C07p34550 Brassica napus HOM05D000566 ORTHO05D000686 5.6e-06 56.2 305 23.6
BolC7t43987H Brassica oleracea HOM05D000566 ORTHO05D000686 5.6e-06 56.2 305 23.6
Lj3g0025101 Lotus japonicus HOM05D000566 ORTHO05D004798 5.6e-06 56.2 256 25.8
ATR0026G023 Amborella trichopoda HOM05D000566 ORTHO05D004798 7.4e-06 55.8 253 24.9
ClCG09G000280 Citrullus lanatus HOM05D000566 ORTHO05D004798 9.6e-06 55.5 240 25.8
Glyma.13G353200 Glycine max HOM05D000566 ORTHO05D004798 9.6e-06 55.5 256 24.6
Gohir.A05G132600 Gossypium hirsutum HOM05D000566 ORTHO05D004798 9.6e-06 55.5 288 23.6
Gohir.D05G134500 Gossypium hirsutum HOM05D000566 ORTHO05D004798 9.6e-06 55.5 288 23.6
Lj5A51G50 Lonicera japonica HOM05D000566 ORTHO05D004798 9.6e-06 55.5 263 23.2
Phvul.010G143700 Phaseolus vulgaris HOM05D000566 ORTHO05D004798 9.6e-06 55.5 238 25.6


User provided reference genes

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