Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03807 Brassica carinata HOM05D006449 ORTHO05D007995 6.0e-64 247.3 119 100.0
BcaB02g09320 Brassica carinata HOM05D006449 ORTHO05D007995 4.3e-62 241.1 119 96.6
BcaC02g11815 Brassica carinata HOM05D006449 ORTHO05D007995 4.3e-62 241.1 119 96.6
A03p20330 Brassica napus HOM05D006449 ORTHO05D007995 9.6e-62 240.0 119 96.6
BraA03t11279Z Brassica rapa HOM05D006449 ORTHO05D007995 9.6e-62 240.0 119 96.6
Thhalv10017435m.g Eutrema salsugineum HOM05D006449 ORTHO05D007995 9.6e-62 240.0 118 96.6
BcaC01g05620 Brassica carinata HOM05D006449 ORTHO05D007995 2.1e-61 238.8 119 95.8
C03p23890 Brassica napus HOM05D006449 ORTHO05D007995 2.1e-61 238.8 119 95.8
BolC3t14781H Brassica oleracea HOM05D006449 ORTHO05D007995 2.1e-61 238.8 119 95.8
A05p08950 Brassica napus HOM05D006449 ORTHO05D007995 4.7e-61 237.7 119 95.0
C04p11060 Brassica napus HOM05D006449 ORTHO05D007995 4.7e-61 237.7 119 95.0
BolC4t22754H Brassica oleracea HOM05D006449 ORTHO05D007995 4.7e-61 237.7 119 95.0
BraA05t19857Z Brassica rapa HOM05D006449 ORTHO05D007995 4.7e-61 237.7 119 95.0
Sp4g19220 Schrenkiella parvula HOM05D006449 ORTHO05D007995 4.7e-61 237.7 119 95.8
AL4G33170 Arabidopsis lyrata HOM05D006449 ORTHO05D007995 1.8e-60 235.7 119 93.3
Carub.0004s1878 Capsella rubella HOM05D006449 ORTHO05D007995 6.8e-60 233.8 119 93.3
CARHR131400 Cardamine hirsuta HOM05D006449 ORTHO05D007995 5.8e-59 230.7 119 89.9
AT2G36930 Arabidopsis thaliana HOM05D006449 ORTHO05D007995 9.9e-59 229.9 117 92.3
Nn2g13802 Nelumbo nucifera HOM05D006449 ORTHO05D007995 1.5e-51 206.1 116 82.8
THA.LOC104823475 Tarenaya hassleriana HOM05D006449 ORTHO05D007995 5.8e-51 204.1 117 82.1
Gorai.002G246900 Gossypium raimondii HOM05D006449 ORTHO05D007995 2.9e-50 201.8 116 79.3
Gohir.A01G213500 Gossypium hirsutum HOM05D006449 ORTHO05D007995 3.8e-50 201.4 115 80.0
Aa31LG5G22150 Aethionema arabicum HOM05D006449 ORTHO05D007995 8.4e-50 200.3 117 84.6
CSS0028691 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 1.4e-49 199.5 116 77.6
TWI74G0214 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 1.4e-49 199.5 117 77.8
Glyma.13G142300 Glycine max HOM05D006449 ORTHO05D007995 1.9e-49 199.1 116 77.6
TWI77G0881 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 1.9e-49 199.1 117 77.8
Manes.09G065800 Manihot esculenta HOM05D006449 ORTHO05D007995 2.4e-49 198.7 116 78.4
VMungo0720G3134 Vigna mungo HOM05D006449 ORTHO05D007995 5.4e-49 197.6 116 77.6
AUR62040339 Chenopodium quinoa HOM05D006449 ORTHO05D007995 9.3e-49 196.8 116 76.7
Gohir.D01G202200 Gossypium hirsutum HOM05D006449 ORTHO05D007995 9.3e-49 196.8 116 77.6
AUR62042508 Chenopodium quinoa HOM05D006449 ORTHO05D007995 1.2e-48 196.4 116 76.7
Glyma.10G055200 Glycine max HOM05D006449 ORTHO05D007995 1.2e-48 196.4 116 75.9
Aqoxy1G01150 Aquilegia oxysepala HOM05D006449 ORTHO05D007995 2.1e-48 195.7 116 77.6
Thecc.05G067500 Theobroma cacao HOM05D006449 ORTHO05D007995 2.1e-48 195.7 116 76.7
CiPaw.10G129500 Carya illinoinensis HOM05D006449 ORTHO05D007995 3.5e-48 194.9 118 76.3
CsaV3_6G039970 Cucumis sativus L. HOM05D006449 ORTHO05D007995 3.5e-48 194.9 116 78.4
Nn6g35286 Nelumbo nucifera HOM05D006449 ORTHO05D007995 3.5e-48 194.9 116 76.7
DCAR_015000 Daucus carota HOM05D006449 ORTHO05D007995 4.6e-48 194.5 117 76.9
ClCG04G009390 Citrullus lanatus HOM05D006449 ORTHO05D007995 7.9e-48 193.7 116 77.6
Nitab4.5_0000814g0040 Nicotiana tabacum HOM05D006449 ORTHO05D007995 1.0e-47 193.4 116 75.9
Phvul.007G219000 Phaseolus vulgaris HOM05D006449 ORTHO05D007995 1.0e-47 193.4 116 75.0
Duzib093G0849 Durio zibethinus HOM05D006449 ORTHO05D007995 1.3e-47 193.0 115 76.5
Hma1.2p1_0205F.1_g086990 Hydrangea macrophylla HOM05D006449 ORTHO05D007995 1.3e-47 193.0 116 77.6
Atru.chr8.1798 Acer truncatum HOM05D006449 ORTHO05D007995 2.3e-47 192.2 119 75.6
Psat6g074040 Pisum sativum HOM05D006449 ORTHO05D007995 2.3e-47 192.2 116 75.9
Actinidia08770 Actinidia chinensis HOM05D006449 ORTHO05D007995 3.0e-47 191.8 116 75.0
Nitab4.5_0003861g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 3.9e-47 191.4 116 75.9
PGR004G0793 Punica granatum HOM05D006449 ORTHO05D007995 3.9e-47 191.4 116 76.7
Ca_11505_v3 Cicer arietinum L. HOM05D006449 ORTHO05D007995 5.1e-47 191.0 116 77.6
MSTRG.5764 Avicennia marina HOM05D006449 ORTHO05D007995 6.6e-47 190.7 116 74.1
Sed0015731 Sechium edule HOM05D006449 ORTHO05D007995 6.6e-47 190.7 116 75.0
Medtr1g063190 Medicago truncatula HOM05D006449 ORTHO05D007995 8.7e-47 190.3 116 75.0
Solyc09g008230.3 Solanum lycopersicum HOM05D006449 ORTHO05D007995 1.5e-46 189.5 116 75.9
Sopen09g003050 Solanum pennellii HOM05D006449 ORTHO05D007995 1.5e-46 189.5 116 75.9
HanXRQChr15g0491571 Helianthus annuus HOM05D006449 ORTHO05D007995 1.9e-46 189.1 116 75.0
Lj5g0001377 Lotus japonicus HOM05D006449 ORTHO05D007995 1.9e-46 189.1 116 75.9
EL10Ac7g16636 Beta vulgaris HOM05D006449 ORTHO05D007995 2.5e-46 188.7 116 74.1
PGSC0003DMG400003863 Solanum tuberosum HOM05D006449 ORTHO05D007995 2.5e-46 188.7 116 75.0
Peaxi162Scf00311g00119 Petunia axillaris HOM05D006449 ORTHO05D007995 3.3e-46 188.3 116 75.0
CAN.G900.29 Capsicum annuum HOM05D006449 ORTHO05D007995 1.6e-45 186.0 116 73.3
CDE09G0874 Ceratophyllum demersum HOM05D006449 ORTHO05D007995 1.6e-45 186.0 118 75.4
Potri.016G093500 Populus trichocarpa HOM05D006449 ORTHO05D007995 2.1e-45 185.7 119 76.5
TPR.G11267 Trifolium pratense HOM05D006449 ORTHO05D007995 3.6e-45 184.9 116 71.6
SEGI_04945 Sequoiadendron giganteum HOM05D006449 ORTHO05D007995 4.8e-45 184.5 114 75.4
GSVIVG01033644001 Vitis vinifera HOM05D006449 ORTHO05D007995 8.1e-45 183.7 117 74.4
Peaxi162Scf00638g00414 Petunia axillaris HOM05D006449 ORTHO05D007995 1.1e-44 183.3 116 75.0
Sabra16G0098600 Salix brachista HOM05D006449 ORTHO05D007995 1.8e-44 182.6 119 75.6
Hund26578 Selenicereus undatus HOM05D006449 ORTHO05D007995 3.1e-44 181.8 118 72.0
ECA248G0052 Erigeron canadensis HOM05D006449 ORTHO05D007995 6.9e-44 180.6 116 72.4
Oeu041490.2 Olea europaea HOM05D006449 ORTHO05D007995 1.2e-43 179.9 123 70.7
Hund20380 Selenicereus undatus HOM05D006449 ORTHO05D007995 2.0e-43 179.1 118 71.2
Zm00001eb038700 Zea mays HOM05D006449 ORTHO05D007995 4.5e-43 177.9 121 69.4
FvH4_6g16440 Fragaria vesca HOM05D006449 ORTHO05D007995 1.3e-42 176.4 118 72.9
FAN05G0981 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.3e-42 176.4 118 72.9
FAN14G2797 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.3e-42 176.4 118 72.9
FAN14G3008 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.3e-42 176.4 118 72.9
Lsat_1_v5_gn_1_52340 Lactuca sativa HOM05D006449 ORTHO05D007995 4.9e-42 174.5 116 73.3
FAN02G2429 Fragaria x ananassa HOM05D006449 ORTHO05D007995 6.4e-42 174.1 118 72.0
Os08g0564500 Oryza sativa ssp. japonica HOM05D006449 ORTHO05D007995 1.1e-41 173.3 121 67.8
RcHm_v2.0_Chr3g0470301 Rosa chinensis HOM05D006449 ORTHO05D007995 2.4e-41 172.2 118 71.2
Mapoly0185s0018 Marchantia polymorpha HOM05D006449 ORTHO05D007995 4.2e-41 171.4 116 71.6
CSS0018897 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 9.3e-41 170.2 130 63.8
Pp3c13_22060 Physcomitrium patens HOM05D006449 ORTHO05D007995 3.5e-40 168.3 116 66.4
unitig_749.g14285 Utricularia gibba HOM05D006449 ORTHO05D007995 7.9e-40 167.2 116 68.1
HanXRQChr01g0027751 Helianthus annuus HOM05D006449 ORTHO05D007995 1.5e-38 162.9 89 79.8
PSO063G3287 Papaver somniferum HOM05D006449 ORTHO05D007995 1.6e-37 159.5 119 68.1
PSO339G4301 Papaver somniferum HOM05D006449 ORTHO05D007995 1.6e-37 159.5 119 68.1
COL.COLO4_26955 Corchorus olitorius HOM05D006449 ORTHO05D007995 4.8e-37 157.9 99 70.7
Lalb_Chr02g0155801 Lupinus albus HOM05D006449 ORTHO05D007995 1.1e-36 156.8 87 77.0
MELO3C024474.2 Cucumis melo HOM05D006449 ORTHO05D007995 3.1e-36 155.2 87 78.2
ATR0219G007 Amborella trichopoda HOM05D006449 ORTHO05D007995 4.0e-36 154.8 87 78.2
SGA_v2.0_scaffold75G24848 Striga asiatica HOM05D006449 ORTHO05D007995 4.0e-36 154.8 114 63.2
QL07p043219 Quercus lobata HOM05D006449 ORTHO05D007995 5.3e-36 154.5 87 75.9
MD12G1112600 Malus domestica HOM05D006449 ORTHO05D007995 2.0e-35 152.5 87 79.3
Sabra06G0098200 Salix brachista HOM05D006449 ORTHO05D007995 2.6e-35 152.1 99 72.7
SGA_v2.0_scaffold40G15520 Striga asiatica HOM05D006449 ORTHO05D007995 4.5e-35 151.4 89 74.2
Rhsim03G0091200 Rhododendron simsii HOM05D006449 ORTHO05D007995 7.6e-35 150.6 89 74.2
Cfa017617 Carpinus fangiana HOM05D006449 ORTHO05D007995 1.7e-34 149.4 128 60.9
MD00G1155400 Malus domestica HOM05D006449 ORTHO05D007995 2.9e-34 148.7 87 77.0
CANSAT80G0535 Cannabis sativa HOM05D006449 ORTHO05D007995 3.8e-34 148.3 87 73.6
Cc06_g04250 Coffea canephora HOM05D006449 ORTHO05D007995 6.0e-32 141.0 78 79.5
HPP92_025806 Vanilla planifolia HOM05D006449 ORTHO05D007995 7.9e-32 140.6 89 70.8
arahy.Tifrunner.gnm1.ann1.9GBJ25 Arachis hypogaea HOM05D006449 ORTHO05D007995 3.3e-30 135.2 84 73.8
arahy.Tifrunner.gnm1.ann1.D9FX9P Arachis hypogaea HOM05D006449 ORTHO05D007995 3.3e-30 135.2 84 73.8
Migut.J00654 Erythranthe guttata HOM05D006449 ORTHO05D007995 5.7e-30 134.4 84 72.6
Ciclev10013228m.g Citrus clementina HOM05D006449 ORTHO05D007995 9.6e-30 133.7 85 71.8
Nitab4.5_0029554g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 9.6e-30 133.7 84 71.4
Potri.006G124100 Populus trichocarpa HOM05D006449 ORTHO05D007995 6.2e-29 131.0 72 80.6
SMO144G0185 Selaginella moellendorffii HOM05D006449 ORTHO05D007995 2.4e-28 129.0 89 66.3
Sc20g0005520 Simmondsia chinensis HOM05D006449 ORTHO05D007995 4.1e-28 128.3 84 67.9
vmacro07293 Vaccinium macrocarpon HOM05D006449 ORTHO05D007995 3.4e-27 125.2 96 62.5
Haze_20546 Corylus avellana HOM05D006449 ORTHO05D007995 2.9e-26 122.1 98 60.2
Oeu005023.1 Olea europaea HOM05D006449 ORTHO05D007995 3.8e-26 121.7 99 60.6
Manes.08G011000 Manihot esculenta HOM05D006449 ORTHO05D007995 1.1e-25 120.2 96 62.5
Prupe.7G129700 Prunus persica HOM05D006449 ORTHO05D007995 6.5e-18 94.4 63 68.3
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 1.4e-17 93.2 53 77.4
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 5.5e-17 91.3 110 44.5
Cre17.g734628 Chlamydomonas reinhardtii HOM05D006449 ORTHO05D007995 2.7e-16 89.0 132 39.4
CBR_g8310 Chara braunii HOM05D006449 ORTHO05D007995 1.4e-15 86.7 116 41.4
MCO09G543 Micromonas commoda HOM05D006449 ORTHO05D007995 3.9e-15 85.1 150 36.7
Lj3A986G82 Lonicera japonica HOM05D006449 ORTHO05D007995 3.7e-13 78.6 116 42.2
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.1e-09 67.0 33 93.9
MSTRG.19181 Avicennia marina HOM05D006449 ORTHO05D007995 6.1e-08 61.2 32 87.5
HanXRQChr16g0526221 Helianthus annuus HOM05D006449 ORTHO05D007995 7.9e-08 60.8 30 76.7


User provided reference genes

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