Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 6.1e-169 597.4 310 100.0
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 7.3e-154 547.4 308 90.9
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 2.1e-153 545.8 309 90.9
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 5.2e-152 541.2 309 90.6
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 7.8e-148 527.3 309 89.3
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 7.8e-148 527.3 309 89.3
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 1.9e-146 522.7 305 86.9
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 1.6e-140 503.1 304 85.2
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 1.0e-139 500.4 311 85.5
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 4.7e-137 491.5 302 84.4
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 8.9e-136 487.3 299 84.9
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 3.5e-132 475.3 301 82.7
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 9.6e-114 414.1 300 71.7
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 6.0e-108 394.8 230 83.0
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 3.7e-105 385.6 223 87.4
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 4.1e-104 382.1 301 65.8
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 1.3e-102 377.1 310 64.2
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 1.1e-101 374.0 324 61.4
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 1.6e-100 370.2 301 65.1
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 2.7e-100 369.4 300 63.3
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 1.3e-99 367.1 305 63.0
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 2.3e-99 366.3 301 64.5
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 3.0e-99 365.9 301 64.8
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 5.1e-99 365.2 305 63.3
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 1.5e-98 363.6 233 75.1
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 2.5e-98 362.8 229 78.6
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.3e-98 362.5 302 65.2
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.3e-98 362.5 302 65.2
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.3e-98 362.1 302 64.9
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 7.4e-98 361.3 292 65.1
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.7e-97 359.0 302 64.6
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 4.8e-97 358.6 251 70.9
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 1.1e-96 357.5 301 64.1
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 1.4e-96 357.1 299 62.9
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 4.1e-96 355.5 298 62.8
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 4.1e-96 355.5 231 74.9
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 1.2e-95 354.0 307 62.2
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 2.6e-95 352.8 300 62.3
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 7.7e-95 351.3 308 61.7
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 1.0e-94 350.9 229 73.4
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 1.0e-94 350.9 214 78.0
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 1.3e-94 350.5 304 64.1
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 3.8e-94 349.0 304 61.2
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 5.0e-94 348.6 234 72.2
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 5.0e-94 348.6 315 60.0
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 8.5e-94 347.8 299 61.5
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 1.4e-93 347.1 231 73.2
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 1.9e-93 346.7 321 58.9
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 1.9e-93 346.7 321 58.9
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 2.5e-93 346.3 231 73.2
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 7.2e-93 344.7 296 60.8
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 9.4e-93 344.4 229 72.1
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 1.2e-92 344.0 299 60.9
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 2.1e-92 343.2 225 75.1
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 3.6e-92 342.4 232 71.6
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 4.7e-92 342.0 231 72.7
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 6.1e-92 341.7 305 60.3
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 6.1e-92 341.7 234 70.1
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 7.9e-92 341.3 247 69.2
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 1.8e-91 340.1 223 74.0
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 5.1e-91 338.6 299 58.5
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 6.7e-91 338.2 223 74.0
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 2.0e-90 336.7 299 62.2
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 4.4e-90 335.5 217 75.6
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 4.4e-90 335.5 216 75.0
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 5.7e-90 335.1 221 71.9
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 7.4e-90 334.7 309 57.0
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 1.7e-89 333.6 220 71.4
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 1.7e-89 333.6 233 70.0
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 4.8e-89 332.0 234 68.8
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 6.3e-89 331.6 248 67.3
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 8.2e-89 331.3 308 58.8
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 1.4e-88 330.5 235 70.2
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 1.8e-88 330.1 296 57.4
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 1.8e-88 330.1 261 63.6
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 2.4e-88 329.7 211 73.5
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 2.4e-88 329.7 216 72.2
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 3.1e-88 329.3 225 72.0
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 3.8e-86 322.4 296 59.8
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 8.5e-86 321.2 254 65.7
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 3.2e-85 319.3 303 57.8
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 5.5e-85 318.5 216 68.5
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 7.2e-85 318.2 256 63.3
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 9.4e-85 317.8 190 78.9
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.6e-84 317.0 256 63.7
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 8.8e-83 311.2 216 70.8
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 2.0e-82 310.1 217 72.4
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 2.8e-81 306.2 299 55.9
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 1.4e-80 303.9 230 63.5
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 1.1e-77 294.3 232 64.7
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 1.6e-71 273.9 217 59.9
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 1.2e-68 264.2 218 58.3
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 2.7e-68 263.1 259 54.4
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 6.3e-65 251.9 215 57.7
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 1.4e-64 250.8 216 56.0
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 9.8e-58 228.0 161 67.1
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 1.1e-56 224.6 161 67.7
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 3.8e-54 216.1 220 54.1
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 6.6e-54 215.3 215 50.2
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 6.6e-54 215.3 230 56.1
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.1e-53 214.5 241 49.8
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 6.1e-52 208.8 156 62.8
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 8.9e-51 204.9 191 52.4
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.6e-50 203.4 152 67.1
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 9.2e-48 194.9 155 63.9
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 3.4e-42 176.4 136 63.2
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 9.8e-42 174.9 165 58.8
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 1.1e-40 171.4 106 75.5
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 1.6e-39 167.5 125 64.0
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 6.4e-33 145.6 97 69.1
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.1e-29 134.8 71 87.3
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.1e-29 134.8 71 87.3
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 1.3e-22 111.3 83 68.7
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 2.6e-18 97.1 98 52.0
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 2.2e-17 94.0 222 27.9
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 2.1e-12 77.4 62 67.7
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 2.9e-09 67.0 40 75.0
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 3.8e-09 66.6 223 24.2
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 1.2e-07 61.6 224 21.9
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 2.7e-07 60.5 66 51.5
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 1.8e-06 57.8 208 24.0
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 1.8e-06 57.8 48 54.2
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 3.0e-06 57.0 49 59.2
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 3.9e-06 56.6 203 22.2
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 5.1e-06 56.2 179 23.5


User provided reference genes

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