Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 3.1e-116 421.8 207 100.0
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 3.2e-65 252.3 220 65.0
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 4.0e-63 245.4 238 60.1
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 3.1e-60 235.7 249 56.2
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 9.1e-60 234.2 249 55.8
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.0e-59 233.0 249 55.8
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 3.5e-59 232.3 249 55.4
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 5.9e-59 231.5 249 55.4
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.3e-58 230.3 249 55.0
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 2.2e-58 229.6 249 55.0
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 6.5e-58 228.0 249 54.2
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.9e-57 226.5 216 60.2
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 4.2e-57 225.3 249 54.6
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 7.2e-57 224.6 249 54.6
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.1e-56 223.0 249 54.2
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 5.2e-55 218.4 249 53.0
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 3.7e-53 212.2 278 47.8
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.8e-52 209.9 232 53.9
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 7.0e-52 208.0 249 51.4
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.3e-50 203.8 249 50.6
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 4.0e-47 192.2 249 46.2
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.5e-46 190.3 249 45.4
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 2.0e-46 189.9 249 44.6
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 2.0e-46 189.9 249 45.4
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 3.4e-46 189.1 253 45.1
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.7e-46 188.3 246 45.5
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.3e-45 187.2 249 45.0
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.3e-45 187.2 249 45.4
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.3e-45 187.2 249 45.4
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.3e-45 187.2 249 45.4
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.7e-45 186.8 249 44.6
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.7e-45 186.8 249 44.6
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 2.2e-45 186.4 249 44.2
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 2.8e-45 186.0 249 45.4
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 2.8e-45 186.0 249 45.4
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 6.3e-45 184.9 249 45.0
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 8.3e-45 184.5 249 45.0
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 8.3e-45 184.5 246 44.7
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.1e-44 184.1 249 45.0
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.1e-44 184.1 249 43.8
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.1e-44 184.1 249 44.6
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.1e-44 184.1 249 44.2
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.8e-44 183.3 249 44.2
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 2.4e-44 183.0 249 43.8
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 3.1e-44 182.6 249 43.8
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 5.4e-44 181.8 249 44.6
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 7.0e-44 181.4 253 43.1
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 9.2e-44 181.0 246 43.5
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 9.2e-44 181.0 249 43.4
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 9.2e-44 181.0 249 43.0
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.2e-43 180.6 249 44.6
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.2e-43 180.6 249 43.4
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.2e-43 180.6 249 43.4
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.6e-43 180.3 249 44.2
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.6e-43 180.3 249 43.0
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.6e-43 180.3 249 43.0
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.6e-43 180.3 249 43.4
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.6e-43 180.3 249 43.4
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.6e-43 180.3 264 42.0
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 2.7e-43 179.5 249 43.8
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.7e-43 179.5 249 43.4
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 2.7e-43 179.5 249 43.8
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 2.7e-43 179.5 249 43.4
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 3.5e-43 179.1 249 43.0
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.9e-43 178.3 266 42.1
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 5.9e-43 178.3 246 45.1
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 5.9e-43 178.3 249 43.8
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 5.9e-43 178.3 249 43.0
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 5.9e-43 178.3 249 43.0
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 7.8e-43 177.9 253 44.3
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 7.8e-43 177.9 249 43.0
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 7.8e-43 177.9 253 43.1
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 7.8e-43 177.9 246 43.9
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 7.8e-43 177.9 249 42.6
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.0e-42 177.6 249 42.6
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-42 177.2 283 40.3
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-42 177.2 283 40.3
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.7e-42 176.8 249 41.4
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 1.7e-42 176.8 249 42.6
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.7e-42 176.8 249 42.6
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.7e-42 176.8 249 42.6
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.9e-42 176.0 249 41.8
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.9e-42 176.0 249 41.8
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.9e-42 176.0 249 43.0
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.8e-42 175.6 249 41.4
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.8e-42 175.6 253 43.9
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 3.8e-42 175.6 249 43.4
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 3.8e-42 175.6 249 41.4
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 5.0e-42 175.3 249 42.6
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 5.0e-42 175.3 249 42.6
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 8.6e-42 174.5 249 42.2
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.1e-41 174.1 248 42.3
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.5e-41 173.7 266 40.6
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.9e-41 173.3 246 43.9
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 3.3e-41 172.6 251 41.8
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 3.3e-41 172.6 253 42.7
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 3.3e-41 172.6 249 42.2
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 4.3e-41 172.2 249 41.0
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 5.6e-41 171.8 249 41.4
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 7.3e-41 171.4 249 41.4
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 7.3e-41 171.4 247 42.9
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 7.3e-41 171.4 249 40.6
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 9.5e-41 171.0 251 40.2
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 9.5e-41 171.0 249 41.8
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.2e-40 170.6 249 40.6
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.2e-40 170.6 249 41.4
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.1e-40 169.9 271 40.2
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 6.1e-40 168.3 250 43.2
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 8.0e-40 167.9 249 41.8
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.8e-39 166.8 249 40.2
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 4.0e-39 165.6 249 40.2
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.5e-38 163.7 249 41.8
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 2.0e-38 163.3 278 39.6
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 9.8e-38 161.0 249 40.6
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 1.7e-37 160.2 248 40.7
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 2.9e-37 159.5 231 42.4
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 8.3e-37 157.9 232 44.4
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 8.3e-37 157.9 249 40.6
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 4.1e-36 155.6 233 41.2
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.2e-35 154.1 253 37.9
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 3.0e-34 149.4 249 39.8
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.5e-33 147.1 299 34.4
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 4.3e-33 145.6 247 36.4
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 7.3e-33 144.8 186 48.4
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.2e-30 137.5 163 50.9
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 4.4e-30 135.6 143 58.0
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 5.8e-30 135.2 163 50.3
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.2e-29 133.3 163 49.7
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.2e-29 133.3 163 49.7
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 7.0e-28 128.3 64 92.2
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.7e-27 126.3 64 90.6
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 2.7e-27 126.3 221 36.2
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 2.1e-24 116.7 64 85.9
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 4.0e-23 112.5 64 82.8
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.2e-19 100.9 64 79.7
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 2.7e-19 99.8 203 35.0
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 3.0e-18 96.3 51 90.2
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 9.5e-17 91.3 49 83.7
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.4e-15 87.4 51 76.5
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 4.0e-15 85.9 172 30.2
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 7.6e-14 81.6 190 35.3
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.0e-10 71.2 163 36.8
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.3e-10 70.9 36 86.1
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.7e-10 70.5 234 25.6
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.7e-10 70.5 248 27.0
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.7e-10 70.5 114 35.1
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 3.9e-10 69.3 250 27.2
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 3.9e-10 69.3 73 45.2
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 6.6e-10 68.6 47 53.2
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.2e-08 64.3 51 47.1


User provided reference genes

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