Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03698 Brassica carinata HOM05D001122 ORTHO05D001877 9.6e-92 340.1 169 100.0
C03p25110 Brassica napus HOM05D001122 ORTHO05D001877 8.0e-46 187.6 139 76.3
BolC3t14902H Brassica oleracea HOM05D001122 ORTHO05D001877 8.0e-46 187.6 139 76.3
BcaB01g03695 Brassica carinata HOM05D001122 ORTHO05D001877 1.0e-45 187.2 139 76.3
BcaC01g05545 Brassica carinata HOM05D001122 ORTHO05D001877 1.0e-45 187.2 139 76.3
BraA03t11360Z Brassica rapa HOM05D001122 ORTHO05D001877 1.2e-41 173.7 145 69.7
A03p21230 Brassica napus HOM05D001122 ORTHO05D001877 5.9e-41 171.4 145 69.0
BcaB01g03692 Brassica carinata HOM05D001122 ORTHO05D001877 3.1e-34 149.1 142 64.1
Sp4g20690 Schrenkiella parvula HOM05D001122 ORTHO05D001877 8.9e-29 131.0 138 57.2
Thhalv10016492m.g Eutrema salsugineum HOM05D001122 ORTHO05D001877 4.9e-27 125.2 139 56.1
Carub.0004s2034 Capsella rubella HOM05D001122 ORTHO05D001877 8.9e-21 104.4 143 53.1
BraA04t18404Z Brassica rapa HOM05D001122 ORTHO05D001877 4.1e-18 95.5 139 51.1
AT2G38370 Arabidopsis thaliana HOM05D001122 ORTHO05D001877 5.4e-18 95.1 139 49.6
Aa31LG5G24080 Aethionema arabicum HOM05D001122 ORTHO05D001877 1.2e-17 94.0 141 47.5
CARHR132980 Cardamine hirsuta HOM05D001122 ORTHO05D001877 2.7e-17 92.8 131 51.1
BcaB06g29047 Brassica carinata HOM05D001122 ORTHO05D001877 4.6e-17 92.0 139 51.1
BcaC02g07472 Brassica carinata HOM05D001122 ORTHO05D001877 4.6e-17 92.0 139 51.1
AL4G35590 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 1.0e-16 90.9 121 52.1
THA.LOC104806079 Tarenaya hassleriana HOM05D001122 ORTHO05D001877 2.3e-16 89.7 159 42.1
Aa31sc463G20 Aethionema arabicum HOM05D001122 ORTHO05D001877 1.5e-15 87.0 101 47.5
THA.LOC104806629 Tarenaya hassleriana HOM05D001122 ORTHO05D001877 1.5e-15 87.0 109 48.6
BcaC02g07470 Brassica carinata HOM05D001122 ORTHO05D001877 3.6e-14 82.4 100 54.0
C04p66660 Brassica napus HOM05D001122 ORTHO05D001877 3.6e-14 82.4 100 54.0
BolC4t28168H Brassica oleracea HOM05D001122 ORTHO05D001877 3.6e-14 82.4 100 54.0
CSS0044199 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 1.5e-12 77.0 110 49.1
AL5G32170 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 3.4e-12 75.9 92 48.9
Cpa.g.sc86.25 Carica papaya HOM05D001122 ORTHO05D001877 3.4e-12 75.9 94 53.2
Sp5g10560 Schrenkiella parvula HOM05D001122 ORTHO05D001877 4.4e-12 75.5 93 48.4
Hma1.2p1_1052F.1_g252360 Hydrangea macrophylla HOM05D001122 ORTHO05D001877 5.8e-12 75.1 88 46.6
CSS0030369 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 9.9e-12 74.3 93 52.7
Eucgr.A00686 Eucalyptus grandis HOM05D001122 ORTHO05D001877 1.3e-11 73.9 93 48.4
Oeu064875.2 Olea europaea HOM05D001122 ORTHO05D003607 1.3e-11 73.9 128 43.0
Oeu064876.1 Olea europaea HOM05D001122 ORTHO05D001877 1.3e-11 73.9 128 43.0
Haze_21139 Corylus avellana HOM05D001122 ORTHO05D001877 2.2e-11 73.2 133 38.3
Haze_21145 Corylus avellana HOM05D001122 ORTHO05D001877 2.2e-11 73.2 133 38.3
Thecc.04G155100 Theobroma cacao HOM05D001122 ORTHO05D001877 2.2e-11 73.2 93 49.5
BcaB01g00426 Brassica carinata HOM05D001122 ORTHO05D001877 2.9e-11 72.8 92 45.7
Thhalv10010401m.g Eutrema salsugineum HOM05D001122 ORTHO05D001877 2.9e-11 72.8 93 47.3
vmacro20355 Vaccinium macrocarpon HOM05D001122 ORTHO05D001877 2.9e-11 72.8 93 49.5
Actinidia11525 Actinidia chinensis HOM05D001122 ORTHO05D001877 6.4e-11 71.6 93 51.6
BraA09t39946Z Brassica rapa HOM05D001122 ORTHO05D001877 6.4e-11 71.6 92 46.7
Cfa017062 Carpinus fangiana HOM05D001122 ORTHO05D001877 6.4e-11 71.6 133 38.3
Gohir.A02G004900 Gossypium hirsutum HOM05D001122 ORTHO05D001877 6.4e-11 71.6 88 48.9
Gohir.D02G005300 Gossypium hirsutum HOM05D001122 ORTHO05D001877 6.4e-11 71.6 117 42.7
Gorai.005G006000 Gossypium raimondii HOM05D001122 ORTHO05D001877 6.4e-11 71.6 117 42.7
QL07p032789 Quercus lobata HOM05D001122 ORTHO05D001877 8.3e-11 71.2 88 47.7
A09p44840 Brassica napus HOM05D001122 ORTHO05D001877 1.1e-10 70.9 92 44.6
Duzib151G1105 Durio zibethinus HOM05D001122 ORTHO05D001877 1.1e-10 70.9 94 47.9
Migut.J00063 Erythranthe guttata HOM05D001122 ORTHO05D001877 1.4e-10 70.5 91 47.3
Oeu060448.2 Olea europaea HOM05D001122 ORTHO05D001877 1.4e-10 70.5 117 41.9
Sabra04G0151000 Salix brachista HOM05D001122 ORTHO05D001877 1.4e-10 70.5 88 48.9
GSVIVG01030215001 Vitis vinifera HOM05D001122 ORTHO05D003607 1.4e-10 70.5 91 47.3
Peaxi162Scf00732g00440 Petunia axillaris HOM05D001122 ORTHO05D001877 1.9e-10 70.1 95 44.2
TWI77G0311 Tripterygium wilfordii HOM05D001122 ORTHO05D001877 2.4e-10 69.7 118 38.1
MSTRG.18958 Avicennia marina HOM05D001122 ORTHO05D001877 4.1e-10 68.9 103 44.7
BolC8t50306H Brassica oleracea HOM05D001122 ORTHO05D001877 4.1e-10 68.9 119 37.0
Duzib212G0698 Durio zibethinus HOM05D001122 ORTHO05D001877 4.1e-10 68.9 89 44.9
TWI74G1328 Tripterygium wilfordii HOM05D001122 ORTHO05D001877 4.1e-10 68.9 118 39.0
unitig_8.g3220 Utricularia gibba HOM05D001122 ORTHO05D001877 4.1e-10 68.9 96 45.8
C08p26890 Brassica napus HOM05D001122 ORTHO05D001877 5.4e-10 68.6 92 43.5
A04p29360 Brassica napus HOM05D001122 ORTHO05D001877 7.1e-10 68.2 135 42.2
Atru.chr8.2373 Acer truncatum HOM05D001122 ORTHO05D001877 9.2e-10 67.8 93 47.3
Dinv25307 Davidia involucrata HOM05D001122 ORTHO05D001877 9.2e-10 67.8 93 48.4
Hund03744 Selenicereus undatus HOM05D001122 ORTHO05D001877 9.2e-10 67.8 86 46.5
Carub.0005s1806 Capsella rubella HOM05D001122 ORTHO05D001877 1.2e-09 67.4 92 45.7
CiPaw.10G163900 Carya illinoinensis HOM05D001122 ORTHO05D001877 1.2e-09 67.4 91 47.3
COL.COLO4_30003 Corchorus olitorius HOM05D001122 ORTHO05D001877 1.2e-09 67.4 96 42.7
CsaV3_UNG107770 Cucumis sativus L. HOM05D001122 ORTHO05D001877 1.2e-09 67.4 91 41.8
MSTRG.5516 Avicennia marina HOM05D001122 ORTHO05D001877 1.6e-09 67.0 88 44.3
BcaB01g00491 Brassica carinata HOM05D001122 ORTHO05D001877 1.6e-09 67.0 92 42.4
BcaB01g00493 Brassica carinata HOM05D001122 ORTHO05D001877 1.6e-09 67.0 92 42.4
MD12G1184800 Malus domestica HOM05D001122 ORTHO05D001877 1.6e-09 67.0 101 43.6
Lsat_1_v5_gn_5_148221 Lactuca sativa HOM05D001122 ORTHO05D001877 2.1e-09 66.6 90 43.3
Manes.09G115600 Manihot esculenta HOM05D001122 ORTHO05D001877 2.1e-09 66.6 119 37.8
Nitab4.5_0000126g0030 Nicotiana tabacum HOM05D001122 ORTHO05D001877 2.1e-09 66.6 119 38.7
PGR031G0394 Punica granatum HOM05D001122 ORTHO05D001877 2.1e-09 66.6 88 44.3
Solyc09g042710.3 Solanum lycopersicum HOM05D001122 ORTHO05D001877 2.1e-09 66.6 88 43.2
Sopen09g015510 Solanum pennellii HOM05D001122 ORTHO05D001877 2.1e-09 66.6 88 43.2
PGSC0003DMG400026574 Solanum tuberosum HOM05D001122 ORTHO05D001877 2.1e-09 66.6 88 43.2
AT3G51720 Arabidopsis thaliana HOM05D001122 ORTHO05D001877 2.7e-09 66.2 92 42.4
BcaC04g22401 Brassica carinata HOM05D001122 ORTHO05D001877 2.7e-09 66.2 89 46.1
Rhsim05G0228900 Rhododendron simsii HOM05D001122 ORTHO05D001877 2.7e-09 66.2 117 41.9
CANSAT35G1567 Cannabis sativa HOM05D001122 ORTHO05D001877 3.5e-09 65.9 88 40.9
Ca_07747_v3 Cicer arietinum L. HOM05D001122 ORTHO05D001877 4.6e-09 65.5 92 45.7
Ciclev10011064m.g Citrus clementina HOM05D001122 ORTHO05D001877 4.6e-09 65.5 93 47.3
TAR629G1123 Trochodendron aralioides HOM05D001122 ORTHO05D001877 4.6e-09 65.5 99 43.4
TAR636G1426 Trochodendron aralioides HOM05D001122 ORTHO05D001877 4.6e-09 65.5 99 43.4
C09p19750 Brassica napus HOM05D001122 ORTHO05D001877 6.0e-09 65.1 89 46.1
BolC9t54877H Brassica oleracea HOM05D001122 ORTHO05D001877 6.0e-09 65.1 89 46.1
CSS0026092 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 6.0e-09 65.1 121 43.0
AUR62029682 Chenopodium quinoa HOM05D001122 ORTHO05D001877 6.0e-09 65.1 111 40.5
Potri.016G133300 Populus trichocarpa HOM05D001122 ORTHO05D001877 6.0e-09 65.1 88 43.2
Rhsim03G0150400 Rhododendron simsii HOM05D001122 ORTHO05D001877 7.8e-09 64.7 140 39.3
Ah.15g090230 Amaranthus hybridus HOM05D001122 ORTHO05D001877 1.0e-08 64.3 93 43.0
HanXRQChr01g0000001 Helianthus annuus HOM05D001122 ORTHO05D001877 1.0e-08 64.3 88 46.6
Psat7g230000 Pisum sativum HOM05D001122 ORTHO05D001877 1.0e-08 64.3 134 33.6
AL96U10050 Arabidopsis lyrata HOM05D001122 ORTHO05D038588 1.3e-08 63.9 56 71.4
Cc06_g00550 Coffea canephora HOM05D001122 ORTHO05D001877 1.3e-08 63.9 89 44.9
ECA248G3012 Erigeron canadensis HOM05D001122 ORTHO05D001877 1.3e-08 63.9 91 45.1
TPR.G5005 Trifolium pratense HOM05D001122 ORTHO05D001877 1.3e-08 63.9 109 38.5
CSS0014462 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 1.7e-08 63.5 120 42.5
AUR62006350 Chenopodium quinoa HOM05D001122 ORTHO05D001877 1.7e-08 63.5 92 44.6
Sc02g0000820 Simmondsia chinensis HOM05D001122 ORTHO05D001877 1.7e-08 63.5 88 42.0
CSS0020386 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 2.3e-08 63.2 121 39.7
CARHR161330 Cardamine hirsuta HOM05D001122 ORTHO05D001877 2.3e-08 63.2 92 44.6
Medtr4g029090 Medicago truncatula HOM05D001122 ORTHO05D001877 2.3e-08 63.2 133 36.8
EL10Ac7g17055 Beta vulgaris HOM05D001122 ORTHO05D001877 3.0e-08 62.8 91 40.7
GSVIVG01032713001 Vitis vinifera HOM05D001122 ORTHO05D001877 3.0e-08 62.8 85 48.2
Aqoxy2G00742 Aquilegia oxysepala HOM05D001122 ORTHO05D001877 5.1e-08 62.0 88 42.0
HanXRQChr10g0298251 Helianthus annuus HOM05D001122 ORTHO05D001877 5.1e-08 62.0 89 43.8
Lj1g0026787 Lotus japonicus HOM05D001122 ORTHO05D001877 5.1e-08 62.0 93 44.1
arahy.Tifrunner.gnm1.ann1.P0IKGX Arachis hypogaea HOM05D001122 ORTHO05D001877 8.6e-08 61.2 97 45.4
Medtr7g072550 Medicago truncatula HOM05D001122 ORTHO05D001877 8.6e-08 61.2 129 35.7
RcHm_v2.0_Chr3g0460971 Rosa chinensis HOM05D001122 ORTHO05D001877 8.6e-08 61.2 113 34.5
CiPaw.09G218300 Carya illinoinensis HOM05D001122 ORTHO05D001877 1.1e-07 60.8 85 44.7
Lalb_Chr07g0190691 Lupinus albus HOM05D001122 ORTHO05D001877 1.1e-07 60.8 98 38.8
MD04G1171400 Malus domestica HOM05D001122 ORTHO05D001877 1.1e-07 60.8 101 40.6
DCAR_015347 Daucus carota HOM05D001122 ORTHO05D001877 1.5e-07 60.5 135 29.6
Glyma.01G131300 Glycine max HOM05D001122 ORTHO05D001877 1.5e-07 60.5 119 35.3
TAR623G0962 Trochodendron aralioides HOM05D001122 ORTHO05D001877 1.9e-07 60.1 88 43.2
TAR623G1430 Trochodendron aralioides HOM05D001122 ORTHO05D001877 1.9e-07 60.1 88 43.2
Psat3g121320 Pisum sativum HOM05D001122 ORTHO05D001877 2.5e-07 59.7 102 34.3
VMungo1383G3549 Vigna mungo HOM05D001122 ORTHO05D001877 2.5e-07 59.7 127 36.2
Lj3g0016412 Lotus japonicus HOM05D001122 ORTHO05D001877 3.3e-07 59.3 97 41.2
Nn2g11099 Nelumbo nucifera HOM05D001122 ORTHO05D001877 3.3e-07 59.3 91 42.9
Sed0001794 Sechium edule HOM05D001122 ORTHO05D001877 3.3e-07 59.3 93 40.9
VMungo0331G1084 Vigna mungo HOM05D001122 ORTHO05D001877 4.3e-07 58.9 116 35.3
ClCG10G022610 Citrullus lanatus HOM05D001122 ORTHO05D001877 5.6e-07 58.5 88 37.5
CsaV3_3G033220 Cucumis sativus L. HOM05D001122 ORTHO05D001877 5.6e-07 58.5 107 37.4
MBI15_g27352_MAGBIO Magnolia biondii HOM05D001122 ORTHO05D001877 5.6e-07 58.5 132 35.6
Sed0011321 Sechium edule HOM05D001122 ORTHO05D001877 7.3e-07 58.2 106 36.8
arahy.Tifrunner.gnm1.ann1.Y8SUHG Arachis hypogaea HOM05D001122 ORTHO05D001877 9.5e-07 57.8 97 44.3
ClCG04G006480 Citrullus lanatus HOM05D001122 ORTHO05D001877 9.5e-07 57.8 119 33.6
MELO3C009115.2 Cucumis melo HOM05D001122 ORTHO05D001877 9.5e-07 57.8 88 37.5
Glyma.03G037500 Glycine max HOM05D001122 ORTHO05D001877 9.5e-07 57.8 116 35.3
Lalb_Chr12g0207571 Lupinus albus HOM05D001122 ORTHO05D001877 9.5e-07 57.8 105 36.2
Dinv10548 Davidia involucrata HOM05D001122 ORTHO05D001877 1.2e-06 57.4 104 44.2
Cpa.g.sc19.90 Carica papaya HOM05D001122 ORTHO05D001877 1.6e-06 57.0 93 41.9
CDE12G0457 Ceratophyllum demersum HOM05D001122 ORTHO05D001877 1.6e-06 57.0 90 40.0
Phvul.001G249000 Phaseolus vulgaris HOM05D001122 ORTHO05D001877 1.6e-06 57.0 127 35.4
Prupe.6G289900 Prunus persica HOM05D001122 ORTHO05D001877 1.6e-06 57.0 93 40.9
FvH4_6g10230 Fragaria vesca HOM05D001122 ORTHO05D001877 2.1e-06 56.6 113 33.6
FAN14G3888 Fragaria x ananassa HOM05D001122 ORTHO05D001877 2.1e-06 56.6 113 33.6
Glyma.11G235600 Glycine max HOM05D001122 ORTHO05D001877 2.1e-06 56.6 127 34.6
Lj6g0018919 Lotus japonicus HOM05D001122 ORTHO05D001877 2.1e-06 56.6 102 40.2
MELO3C026053.2 Cucumis melo HOM05D001122 ORTHO05D001877 3.6e-06 55.8 91 37.4
Sp4g22830 Schrenkiella parvula HOM05D001122 ORTHO05D001877 3.6e-06 55.8 91 41.8
AL4G38330 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 4.7e-06 55.5 88 42.0
Lj1A965T41 Lonicera japonica HOM05D001122 ORTHO05D001877 4.7e-06 55.5 118 41.5
ATR0681G215 Amborella trichopoda HOM05D001122 ORTHO05D001877 6.2e-06 55.1 92 39.1
ClCG11G005750 Citrullus lanatus HOM05D001122 ORTHO05D001877 6.2e-06 55.1 127 37.8
LjContig00357g0016613 Lotus japonicus HOM05D001122 ORTHO05D001877 6.2e-06 55.1 99 41.4
AT2G40480 Arabidopsis thaliana HOM05D001122 ORTHO05D001877 8.1e-06 54.7 88 42.0
MSTRG.8901 Avicennia marina HOM05D001122 ORTHO05D001877 8.1e-06 54.7 121 37.2
CDE04G2871 Ceratophyllum demersum HOM05D001122 ORTHO05D001877 8.1e-06 54.7 104 36.5
MD01G1163200 Malus domestica HOM05D001122 ORTHO05D001877 8.1e-06 54.7 89 43.8


User provided reference genes

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