Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03678 Brassica carinata HOM05D006353 ORTHO05D007993 3.4e-192 674.9 353 100.0
BcaB01g03677 Brassica carinata HOM05D006353 ORTHO05D007993 3.8e-175 618.2 358 92.7
BraA03t11371Z Brassica rapa HOM05D006353 ORTHO05D007993 1.2e-171 606.7 358 89.7
C03p25230 Brassica napus HOM05D006353 ORTHO05D007993 3.4e-171 605.1 358 89.9
A03p21360 Brassica napus HOM05D006353 ORTHO05D007993 1.3e-170 603.2 358 88.8
BcaC01g05532 Brassica carinata HOM05D006353 ORTHO05D007993 1.1e-169 600.1 358 89.7
BolC3t14918H Brassica oleracea HOM05D006353 ORTHO05D007993 1.1e-169 600.1 358 89.7
Sp4g20840 Schrenkiella parvula HOM05D006353 ORTHO05D007993 5.2e-164 581.3 358 86.0
BcaB02g09176 Brassica carinata HOM05D006353 ORTHO05D007993 1.6e-160 569.7 359 83.3
BcaC02g12001 Brassica carinata HOM05D006353 ORTHO05D007993 3.5e-160 568.5 359 82.7
Thhalv10016859m.g Eutrema salsugineum HOM05D006353 ORTHO05D007993 5.9e-160 567.8 358 84.1
CARHR133200 Cardamine hirsuta HOM05D006353 ORTHO05D007993 2.3e-159 565.8 358 83.5
Carub.0004s2049 Capsella rubella HOM05D006353 ORTHO05D007993 2.5e-158 562.4 355 83.4
C04p09030 Brassica napus HOM05D006353 ORTHO05D007993 3.3e-158 562.0 359 82.2
BolC4t22493H Brassica oleracea HOM05D006353 ORTHO05D007993 3.3e-158 562.0 359 82.2
A05p07550 Brassica napus HOM05D006353 ORTHO05D007993 1.2e-157 560.1 360 81.9
BraA05t19722Z Brassica rapa HOM05D006353 ORTHO05D007993 1.2e-157 560.1 360 81.9
AT2G38500 Arabidopsis thaliana HOM05D006353 ORTHO05D007993 1.6e-157 559.7 358 82.4
AL4G35790 Arabidopsis lyrata HOM05D006353 ORTHO05D007993 4.0e-156 555.1 356 81.5
Aa31LG5G23800 Aethionema arabicum HOM05D006353 ORTHO05D007993 1.2e-149 533.5 358 80.2
THA.LOC104806639 Tarenaya hassleriana HOM05D006353 ORTHO05D007993 1.1e-124 450.7 348 67.8
Thecc.04G154100 Theobroma cacao HOM05D006353 ORTHO05D007993 1.1e-76 291.2 351 50.4
Duzib212G0771 Durio zibethinus HOM05D006353 ORTHO05D007993 5.3e-76 288.9 348 48.3
Gorai.011G129000 Gossypium raimondii HOM05D006353 ORTHO05D007993 5.2e-71 272.3 323 46.4
Gohir.A10G149700 Gossypium hirsutum HOM05D006353 ORTHO05D007993 1.1e-70 271.2 350 44.3
Gohir.D10G117100 Gossypium hirsutum HOM05D006353 ORTHO05D007993 5.7e-70 268.9 323 46.1
Ciclev10012094m.g Citrus clementina HOM05D006353 ORTHO05D007993 8.2e-69 265.0 359 46.2
Atru.chr8.2382 Acer truncatum HOM05D006353 ORTHO05D007993 2.7e-59 233.4 329 42.9
Dinv25324 Davidia involucrata HOM05D006353 ORTHO05D007993 2.2e-58 230.3 345 38.3
Duzib151G0311 Durio zibethinus HOM05D006353 ORTHO05D007993 9.4e-57 224.9 262 46.9
GSVIVG01030203001 Vitis vinifera HOM05D006353 ORTHO05D007993 1.4e-55 221.1 353 38.2
Manes.09G116500 Manihot esculenta HOM05D006353 ORTHO05D007993 2.6e-54 216.9 350 40.0
QL07p032560 Quercus lobata HOM05D006353 ORTHO05D007993 8.3e-53 211.8 321 42.1
Sabra04G0151900 Salix brachista HOM05D006353 ORTHO05D007993 4.1e-52 209.5 329 41.6
Sc07g0005810 Simmondsia chinensis HOM05D006353 ORTHO05D007993 5.4e-52 209.1 322 40.4
Potri.016G134500 Populus trichocarpa HOM05D006353 ORTHO05D007993 5.9e-51 205.7 323 40.6
AUR62006369 Chenopodium quinoa HOM05D006353 ORTHO05D007993 7.7e-51 205.3 326 39.0
EL10Ac7g17070 Beta vulgaris HOM05D006353 ORTHO05D007993 1.9e-49 200.7 324 37.7
Sc20g0006870 Simmondsia chinensis HOM05D006353 ORTHO05D007993 2.5e-49 200.3 312 38.8
Manes.08G173800 Manihot esculenta HOM05D006353 ORTHO05D007993 3.2e-49 199.9 320 40.9
Cfa017056 Carpinus fangiana HOM05D006353 ORTHO05D007993 2.1e-48 197.2 355 40.0
TWI74G0177 Tripterygium wilfordii HOM05D006353 ORTHO05D007993 1.2e-46 191.4 354 39.5
Rhsim05G0229500 Rhododendron simsii HOM05D006353 ORTHO05D007993 5.7e-46 189.1 349 35.8
Actinidia11518 Actinidia chinensis HOM05D006353 ORTHO05D007993 1.3e-45 188.0 354 37.3
CiPaw.09G219300 Carya illinoinensis HOM05D006353 ORTHO05D007993 1.7e-45 187.6 325 41.2
vmacro20360 Vaccinium macrocarpon HOM05D006353 ORTHO05D007993 3.7e-45 186.4 349 35.8
Haze_21157 Corylus avellana HOM05D006353 ORTHO05D007993 2.4e-44 183.7 296 41.6
TAR636G2144 Trochodendron aralioides HOM05D006353 ORTHO05D007993 7.0e-44 182.2 362 35.6
BcaB02g09177 Brassica carinata HOM05D006353 ORTHO05D007993 2.7e-43 180.3 122 83.6
Glyma.18G215200 Glycine max HOM05D006353 ORTHO05D007993 2.8e-40 170.2 354 34.2
Prupe.6G291400 Prunus persica HOM05D006353 ORTHO05D007993 6.1e-40 169.1 362 33.1
CSS0001064 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 2.3e-39 167.2 329 37.4
Migut.J00057 Erythranthe guttata HOM05D006353 ORTHO05D007993 2.3e-39 167.2 336 35.4
Hund19788 Selenicereus undatus HOM05D006353 ORTHO05D007993 6.8e-39 165.6 237 41.4
Lj1g0007888 Lotus japonicus HOM05D006353 ORTHO05D007993 1.2e-38 164.9 346 33.2
Ah.08g209640 Amaranthus hybridus HOM05D006353 ORTHO05D007993 5.7e-38 162.5 236 41.1
Oeu026960.1 Olea europaea HOM05D006353 ORTHO05D007993 7.5e-38 162.2 343 33.8
ClCG04G006410 Citrullus lanatus HOM05D006353 ORTHO05D007993 3.2e-36 156.8 354 37.6
RcHm_v2.0_Chr3g0460831 Rosa chinensis HOM05D006353 ORTHO05D007993 3.2e-36 156.8 347 30.3
AUR62029702 Chenopodium quinoa HOM05D006353 ORTHO05D007993 5.4e-36 156.0 236 39.8
CSS0032329 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 2.7e-35 153.7 296 38.2
MSTRG.18951 Avicennia marina HOM05D006353 ORTHO05D007993 7.8e-35 152.1 320 33.1
VMungo1383G2355 Vigna mungo HOM05D006353 ORTHO05D007993 1.0e-34 151.8 311 33.8
arahy.Tifrunner.gnm1.ann1.0YL58U Arachis hypogaea HOM05D006353 ORTHO05D007993 1.3e-34 151.4 357 33.6
arahy.Tifrunner.gnm1.ann1.FA4IPG Arachis hypogaea HOM05D006353 ORTHO05D007993 1.3e-34 151.4 357 33.6
Phvul.008G084100 Phaseolus vulgaris HOM05D006353 ORTHO05D007993 8.6e-34 148.7 333 33.6
Dinv11379 Davidia involucrata HOM05D006353 ORTHO05D007993 1.1e-33 148.3 204 41.7
Lalb_Chr19g0124031 Lupinus albus HOM05D006353 ORTHO05D007993 4.3e-33 146.4 359 32.0
FAN05G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 1.6e-32 144.4 351 31.1
HanXRQChr14g0433401 Helianthus annuus HOM05D006353 ORTHO05D007993 2.1e-32 144.1 354 31.1
FAN09G0411 Fragaria x ananassa HOM05D006353 ORTHO05D007993 6.2e-32 142.5 351 31.1
COL.COLO4_16552 Corchorus olitorius HOM05D006353 ORTHO05D007993 8.0e-32 142.1 174 50.0
ECA248G0672 Erigeron canadensis HOM05D006353 ORTHO05D007993 1.8e-31 141.0 359 30.6
FAN14G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 2.3e-31 140.6 351 30.2
FvH4_6g10130 Fragaria vesca HOM05D006353 ORTHO05D007993 4.0e-31 139.8 351 30.2
MD12G1185800 Malus domestica HOM05D006353 ORTHO05D007993 4.0e-31 139.8 367 32.7
ECA236G3817 Erigeron canadensis HOM05D006353 ORTHO05D007993 1.5e-30 137.9 353 28.6
Medtr7g072635 Medicago truncatula HOM05D006353 ORTHO05D007993 1.5e-30 137.9 323 31.3
Medtr7g072870 Medicago truncatula HOM05D006353 ORTHO05D007993 1.5e-30 137.9 323 31.3
SalBow5G5035 Salvia bowleyana HOM05D006353 ORTHO05D007993 4.4e-30 136.3 327 33.6
SalBow5G5483 Salvia bowleyana HOM05D006353 ORTHO05D007993 4.4e-30 136.3 327 33.6
CsaV3_4G027090 Cucumis sativus L. HOM05D006353 ORTHO05D007993 1.3e-29 134.8 363 32.8
Sed0002935 Sechium edule HOM05D006353 ORTHO05D007993 4.9e-29 132.9 351 32.5
Lsat_1_v5_gn_8_107941 Lactuca sativa HOM05D006353 ORTHO05D007993 1.9e-28 131.0 281 29.9
Eucgr.K01277 Eucalyptus grandis HOM05D006353 ORTHO05D007993 3.2e-28 130.2 366 31.4
PGSC0003DMG400004416 Solanum tuberosum HOM05D006353 ORTHO05D007993 1.2e-27 128.3 309 30.4
Nn2g10337 Nelumbo nucifera HOM05D006353 ORTHO05D007993 2.7e-27 127.1 360 31.7
HanXRQChr16g0509461 Helianthus annuus HOM05D006353 ORTHO05D007993 6.0e-27 125.9 353 26.9
Sopen09g010850 Solanum pennellii HOM05D006353 ORTHO05D007993 1.3e-26 124.8 315 30.8
MELO3C025210.2 Cucumis melo HOM05D006353 ORTHO05D007993 2.5e-25 120.6 266 35.7
Actinidia29043 Actinidia chinensis HOM05D006353 ORTHO05D007993 8.1e-24 115.5 188 41.0
PSO384G2070 Papaver somniferum HOM05D006353 ORTHO05D007993 8.1e-24 115.5 373 28.4
HPP92_022856 Vanilla planifolia HOM05D006353 ORTHO05D007993 2.3e-23 114.0 328 31.7
PSO339G6092 Papaver somniferum HOM05D006353 ORTHO05D007993 5.2e-23 112.8 374 29.1
Lsat_1_v5_gn_5_150140 Lactuca sativa HOM05D006353 ORTHO05D007993 6.8e-23 112.5 258 32.6
FAN05G5674 Fragaria x ananassa HOM05D006353 ORTHO05D007993 2.0e-22 110.9 349 28.7
PGR004G2035 Punica granatum HOM05D006353 ORTHO05D007993 7.1e-20 102.4 330 27.9
CANSAT35G0573 Cannabis sativa HOM05D006353 ORTHO05D007993 2.1e-19 100.9 354 29.4
Cpa.g.c45395 Carica papaya HOM05D006353 ORTHO05D007993 3.9e-18 96.7 107 47.7
CiPaw.09G219500 Carya illinoinensis HOM05D006353 ORTHO05D007993 8.6e-18 95.5 175 41.1
Ca_07754_v3 Cicer arietinum L. HOM05D006353 ORTHO05D007993 4.3e-17 93.2 264 31.4
Ca_29600_v3 Cicer arietinum L. HOM05D006353 ORTHO05D007993 4.3e-17 93.2 264 31.4
FAN02G1449 Fragaria x ananassa HOM05D006353 ORTHO05D007993 4.3e-17 93.2 288 27.4
AUR62031907 Chenopodium quinoa HOM05D006831 ORTHO05D008256 5.6e-17 92.8 291 28.9
DCAR_018544 Daucus carota HOM05D006353 ORTHO05D007993 2.1e-16 90.9 271 29.5
MBI03_g38281_MAGBIO Magnolia biondii HOM05D006353 ORTHO05D007993 5.2e-15 86.3 167 34.7
Os01g0823400 Oryza sativa ssp. japonica HOM05D006353 ORTHO05D007993 8.9e-15 85.5 340 29.1
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 8.9e-15 85.5 354 26.3
MD09G1204500 Malus domestica HOM05D006831 ORTHO05D008256 4.4e-14 83.2 361 26.3
Atru.chr1.3517 Acer truncatum HOM05D006831 ORTHO05D008256 1.3e-13 81.6 353 26.1
AUR62022199 Chenopodium quinoa HOM05D006831 ORTHO05D008256 2.2e-13 80.9 257 28.0
Prupe.3G060100 Prunus persica HOM05D006831 ORTHO05D008256 2.9e-13 80.5 349 26.9
Psat3g120040 Pisum sativum HOM05D006353 ORTHO05D007993 3.8e-13 80.1 191 31.4
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 4.9e-13 79.7 358 26.3
EL10Ac9g21213 Beta vulgaris HOM05D006831 ORTHO05D008256 6.4e-13 79.3 335 26.3
Rhsim08G0227100 Rhododendron simsii HOM05D006831 ORTHO05D008256 8.4e-13 79.0 360 25.6
Ah.01g022020 Amaranthus hybridus HOM05D006831 ORTHO05D008256 1.4e-12 78.2 258 25.6
FAN02G3719 Fragaria x ananassa HOM05D006831 ORTHO05D008256 1.4e-12 78.2 359 25.9
TPR.G26913 Trifolium pratense HOM05D006353 ORTHO05D007993 1.4e-12 78.2 176 27.3
TPR.G29201 Trifolium pratense HOM05D006831 ORTHO05D008256 1.4e-12 78.2 261 29.1
COL.COLO4_30498 Corchorus olitorius HOM05D006831 ORTHO05D008256 1.9e-12 77.8 361 25.8
Actinidia21708 Actinidia chinensis HOM05D006831 ORTHO05D008256 2.4e-12 77.4 345 25.5
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 2.4e-12 77.4 357 26.6
Ciclev10025849m.g Citrus clementina HOM05D006831 ORTHO05D008256 4.1e-12 76.6 352 26.7
FvH4_6g32300 Fragaria vesca HOM05D006831 ORTHO05D008256 7.1e-12 75.9 348 25.3
Thecc.06G098700 Theobroma cacao HOM05D006831 ORTHO05D008256 7.1e-12 75.9 353 25.5
MSTRG.11030 Avicennia marina HOM05D006831 ORTHO05D008256 1.6e-11 74.7 363 26.7
Nitab4.5_0003003g0010 Nicotiana tabacum HOM05D006353 ORTHO05D007993 2.1e-11 74.3 142 35.2
RcHm_v2.0_Chr2g0140341 Rosa chinensis HOM05D006831 ORTHO05D008256 2.1e-11 74.3 365 25.2
arahy.Tifrunner.gnm1.ann1.4LXS91 Arachis hypogaea HOM05D006831 ORTHO05D008256 2.7e-11 73.9 264 27.3
FAN05G2796 Fragaria x ananassa HOM05D006831 ORTHO05D008256 2.7e-11 73.9 359 25.9
TAR383G0884 Trochodendron aralioides HOM05D006831 ORTHO05D008256 2.7e-11 73.9 353 25.2
CANSAT56G0873 Cannabis sativa HOM05D006831 ORTHO05D008256 3.5e-11 73.6 353 24.1
SGA_v2.0_scaffold85G26642 Striga asiatica HOM05D006353 ORTHO05D007993 4.6e-11 73.2 142 38.7
arahy.Tifrunner.gnm1.ann1.U3LBHC Arachis hypogaea HOM05D006831 ORTHO05D008256 6.0e-11 72.8 265 26.8
Manes.11G034300 Manihot esculenta HOM05D006831 ORTHO05D008256 6.0e-11 72.8 253 28.5
TWI12G0407 Tripterygium wilfordii HOM05D006831 ORTHO05D008256 6.0e-11 72.8 364 24.2
ATR0681G315 Amborella trichopoda HOM05D006353 ORTHO05D007993 7.8e-11 72.4 140 33.6
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 7.8e-11 72.4 360 25.3
PSO210G6112 Papaver somniferum HOM05D006831 ORTHO05D008256 7.8e-11 72.4 173 31.2
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 7.8e-11 72.4 348 25.6
Lalb_Chr04g0262951 Lupinus albus HOM05D006831 ORTHO05D008256 1.0e-10 72.0 246 26.4
ECA247G2417 Erigeron canadensis HOM05D006831 ORTHO05D008256 1.3e-10 71.6 301 24.9
Duzib235G1306 Durio zibethinus HOM05D006831 ORTHO05D008256 2.3e-10 70.9 359 25.1
VMungo0331G1511 Vigna mungo HOM05D006831 ORTHO05D008256 2.3e-10 70.9 256 26.2
Cpa.g.sc109.6 Carica papaya HOM05D006831 ORTHO05D008256 3.0e-10 70.5 256 24.2
Gorai.003G062200 Gossypium raimondii HOM05D006831 ORTHO05D008256 3.9e-10 70.1 362 25.1
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 6.6e-10 69.3 357 25.2
PSO210G4514 Papaver somniferum HOM05D006831 ORTHO05D008256 8.7e-10 68.9 172 30.2
QL05p020342 Quercus lobata HOM05D006831 ORTHO05D008256 8.7e-10 68.9 352 26.4
Potri.001G189400 Populus trichocarpa HOM05D006831 ORTHO05D008256 1.1e-09 68.6 348 26.4
Psat4g221040 Pisum sativum HOM05D006831 ORTHO05D008256 1.5e-09 68.2 186 30.6
Gohir.D03G058400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 1.9e-09 67.8 362 25.7
Phvul.010G145700 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 1.9e-09 67.8 347 25.6
ClCG00G002730 Citrullus lanatus HOM05D006831 ORTHO05D008256 2.5e-09 67.4 286 27.6
ClCG07G013280 Citrullus lanatus HOM05D006831 ORTHO05D008256 2.5e-09 67.4 286 27.6
Zm00001eb368790 Zea mays HOM05D006353 ORTHO05D007993 2.5e-09 67.4 347 27.7
Gohir.A02G117700 Gossypium hirsutum HOM05D006831 ORTHO05D008256 3.3e-09 67.0 360 24.7
FAN14G1280 Fragaria x ananassa HOM05D006831 ORTHO05D008256 4.3e-09 66.6 354 26.6
Medtr8g014330 Medicago truncatula HOM05D006831 ORTHO05D008256 4.3e-09 66.6 188 28.7
Gorai.011G071900 Gossypium raimondii HOM05D006831 ORTHO05D008256 5.6e-09 66.2 368 24.7
Oeu050599.1 Olea europaea HOM05D006831 ORTHO05D008256 5.6e-09 66.2 351 25.6
CsaV3_3G023650 Cucumis sativus L. HOM05D006831 ORTHO05D008256 7.3e-09 65.9 206 29.1
Nitab4.5_0001697g0120 Nicotiana tabacum HOM05D006353 ORTHO05D007993 9.6e-09 65.5 137 30.7
Peaxi162Scf00732g00043 Petunia axillaris HOM05D006353 ORTHO05D007993 9.6e-09 65.5 135 33.3
Nitab4.5_0001469g0020 Nicotiana tabacum HOM05D006353 ORTHO05D007993 1.2e-08 65.1 142 33.1
Gohir.A10G066100 Gossypium hirsutum HOM05D006831 ORTHO05D008256 2.8e-08 63.9 368 24.2
Lj3g0006655 Lotus japonicus HOM05D006831 ORTHO05D008256 3.6e-08 63.5 211 27.0
CiPaw.01G232000 Carya illinoinensis HOM05D006831 ORTHO05D008256 6.2e-08 62.8 368 25.0
Glyma.07G015900 Glycine max HOM05D006831 ORTHO05D008256 6.2e-08 62.8 251 24.3
Gohir.D10G067400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 6.2e-08 62.8 371 24.0
HanXRQChr10g0313251 Helianthus annuus HOM05D006831 ORTHO05D008256 6.2e-08 62.8 353 22.9
Potri.011G047800 Populus trichocarpa HOM05D006831 ORTHO05D008256 6.2e-08 62.8 348 24.4
Ca_23268_v3 Cicer arietinum L. HOM05D006831 ORTHO05D008256 8.1e-08 62.4 186 29.6
Cc04_g02630 Coffea canephora HOM05D006831 ORTHO05D008256 8.1e-08 62.4 193 25.9
COL.COLO4_16553 Corchorus olitorius HOM05D006353 ORTHO05D007993 3.1e-07 60.5 100 40.0
Sabra11G0033200 Salix brachista HOM05D006831 ORTHO05D008256 3.1e-07 60.5 352 23.3
Hma1.2p1_0430F.1_g151466 Hydrangea macrophylla HOM05D006831 ORTHO05D008256 5.2e-07 59.7 362 24.9
Hma1.2p1_1052F.1_g252320 Hydrangea macrophylla HOM05D006353 ORTHO05D007993 9.0e-07 58.9 184 28.8
TAR626G1633 Trochodendron aralioides HOM05D006831 ORTHO05D008256 2.0e-06 57.8 189 27.5
ATR0705G209 Amborella trichopoda HOM05D006831 ORTHO05D008256 2.6e-06 57.4 154 28.6
Sed0018864 Sechium edule HOM05D006831 ORTHO05D008256 2.6e-06 57.4 199 26.6
PGR102G2866 Punica granatum HOM05D006831 ORTHO05D008256 3.4e-06 57.0 367 23.4
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 9.9e-06 55.5 374 22.7


User provided reference genes

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