Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03615 Brassica carinata HOM05D000290 ORTHO05D007415 1.3e-45 186.0 98 100.0
BcaB01g03617 Brassica carinata HOM05D000290 ORTHO05D007415 5.1e-37 157.5 84 100.0
A03p21900 Brassica napus HOM05D000290 ORTHO05D007415 1.5e-33 146.0 84 94.0
C03p25970 Brassica napus HOM05D000290 ORTHO05D007415 1.5e-33 146.0 84 94.0
BraA03t11426Z Brassica rapa HOM05D000290 ORTHO05D007415 1.5e-33 146.0 84 94.0
BcaB01g03651 Brassica carinata HOM05D000290 ORTHO05D007415 5.0e-32 141.0 83 91.6
BolC3t14982H Brassica oleracea HOM05D000290 ORTHO05D007415 5.0e-32 141.0 83 91.6
Thhalv10016257m.g Eutrema salsugineum HOM05D000290 ORTHO05D007415 4.2e-31 137.9 84 88.1
Sp4g21520 Schrenkiella parvula HOM05D000290 ORTHO05D007415 3.0e-29 131.7 84 84.5
AL4G36490 Arabidopsis lyrata HOM05D000290 ORTHO05D007415 1.5e-25 119.4 83 78.3
Carub.0004s2123 Capsella rubella HOM05D000290 ORTHO05D007415 3.5e-25 118.2 83 78.3
AT2G39190 Arabidopsis thaliana HOM05D000290 ORTHO05D007415 2.9e-24 115.2 83 78.3
Aa31LG5G20180 Aethionema arabicum HOM05D000290 ORTHO05D007415 4.8e-19 97.8 80 66.2
THA.LOC104809972 Tarenaya hassleriana HOM05D000290 ORTHO05D007415 3.1e-18 95.1 80 63.8
Cc09_g02000 Coffea canephora HOM05D000290 ORTHO05D007415 4.2e-15 84.7 81 51.9
Sabra10G0170700 Salix brachista HOM05D000290 ORTHO05D007415 2.1e-14 82.4 80 52.5
Cfa001614 Carpinus fangiana HOM05D000290 ORTHO05D007415 2.7e-14 82.0 85 51.8
MSTRG.369 Avicennia marina HOM05D000290 ORTHO05D007415 4.7e-14 81.3 79 51.9
Glyma.20G179100 Glycine max HOM05D000290 ORTHO05D007415 1.4e-13 79.7 81 53.1
PGR142G4180 Punica granatum HOM05D000290 ORTHO05D007415 1.4e-13 79.7 91 50.5
Potri.010G221000 Populus trichocarpa HOM05D000290 ORTHO05D007415 1.8e-13 79.3 80 50.0
CiPaw.02G174700 Carya illinoinensis HOM05D000290 ORTHO05D007415 3.0e-13 78.6 80 52.5
AUR62037660 Chenopodium quinoa HOM05D000290 ORTHO05D007415 4.0e-13 78.2 81 54.3
Oeu034811.1 Olea europaea HOM05D000290 ORTHO05D007415 4.0e-13 78.2 74 52.7
SalBow3G1677 Salvia bowleyana HOM05D000290 ORTHO05D007415 4.0e-13 78.2 93 49.5
SGA_v2.0_scaffold341G49361 Striga asiatica HOM05D000290 ORTHO05D007415 8.8e-13 77.0 75 48.0
EL10Ac2g03246 Beta vulgaris HOM05D000290 ORTHO05D007415 1.5e-12 76.3 68 52.9
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.5e-12 76.3 82 52.4
FAN03G2244 Fragaria x ananassa HOM05D000290 ORTHO05D007415 2.0e-12 75.9 63 58.7
Ciclev10030711m.g Citrus clementina HOM05D000290 ORTHO05D007415 2.6e-12 75.5 60 60.0
TAR636G1312 Trochodendron aralioides HOM05D000290 ORTHO05D007415 2.6e-12 75.5 77 50.6
Lj5g0003555 Lotus japonicus HOM05D000290 ORTHO05D007415 3.4e-12 75.1 77 50.6
COL.COLO4_23704 Corchorus olitorius HOM05D000290 ORTHO05D007415 4.4e-12 74.7 80 50.0
Sed0009428 Sechium edule HOM05D000290 ORTHO05D007415 4.4e-12 74.7 67 50.7
CANSAT56G0046 Cannabis sativa HOM05D000290 ORTHO05D007415 5.7e-12 74.3 76 51.3
FvH4_7g19760 Fragaria vesca HOM05D000290 ORTHO05D007415 7.5e-12 73.9 63 58.7
FAN06G5088 Fragaria x ananassa HOM05D000290 ORTHO05D007415 7.5e-12 73.9 63 58.7
Glyma.10G212000 Glycine max HOM05D000290 ORTHO05D007415 7.5e-12 73.9 81 49.4
MD07G1176000 Malus domestica HOM05D000290 ORTHO05D007415 7.5e-12 73.9 73 50.7
Thecc.10G071500 Theobroma cacao HOM05D000290 ORTHO05D007415 7.5e-12 73.9 84 50.0
TWI63G0995 Tripterygium wilfordii HOM05D000290 ORTHO05D007415 7.5e-12 73.9 66 56.1
VMungo0720G0458 Vigna mungo HOM05D000290 ORTHO05D007415 7.5e-12 73.9 77 48.1
Medtr1g095480 Medicago truncatula HOM05D000290 ORTHO05D007415 9.8e-12 73.6 77 50.6
MELO3C012436.2 Cucumis melo HOM05D000290 ORTHO05D007415 1.3e-11 73.2 63 54.0
ECA232G0301 Erigeron canadensis HOM05D000290 ORTHO05D007415 1.3e-11 73.2 69 55.1
Nitab4.5_0000233g0060 Nicotiana tabacum HOM05D000290 ORTHO05D007415 1.3e-11 73.2 70 54.3
Prupe.8G142600 Prunus persica HOM05D000290 ORTHO05D007415 1.3e-11 73.2 59 57.6
RcHm_v2.0_Chr1g0363651 Rosa chinensis HOM05D000290 ORTHO05D007415 1.3e-11 73.2 80 50.0
Aqoxy1G01252 Aquilegia oxysepala HOM05D000290 ORTHO05D007415 1.7e-11 72.8 82 47.6
Duzib106G1672 Durio zibethinus HOM05D000290 ORTHO05D007415 1.7e-11 72.8 80 50.0
Gohir.A10G206900 Gossypium hirsutum HOM05D000290 ORTHO05D007415 1.7e-11 72.8 80 50.0
Gohir.D10G215000 Gossypium hirsutum HOM05D000290 ORTHO05D007415 1.7e-11 72.8 80 50.0
Gorai.011G240500 Gossypium raimondii HOM05D000290 ORTHO05D007415 1.7e-11 72.8 80 50.0
Nitab4.5_0001448g0010 Nicotiana tabacum HOM05D000290 ORTHO05D007415 1.7e-11 72.8 70 54.3
Cpa.g.sc53.63 Carica papaya HOM05D000290 ORTHO05D007415 2.2e-11 72.4 59 59.3
PSO339G6283 Papaver somniferum HOM05D000290 ORTHO05D007415 2.2e-11 72.4 80 48.8
Sc20g0001930 Simmondsia chinensis HOM05D000290 ORTHO05D007415 2.2e-11 72.4 85 49.4
arahy.Tifrunner.gnm1.ann1.IU7X6X Arachis hypogaea HOM05D000290 ORTHO05D007415 2.8e-11 72.0 77 49.4
Manes.07G104400 Manihot esculenta HOM05D000290 ORTHO05D007415 3.7e-11 71.6 79 49.4
GSVIVG01016296001 Vitis vinifera HOM05D000290 ORTHO05D007415 3.7e-11 71.6 73 56.2
arahy.Tifrunner.gnm1.ann1.AS9ABP Arachis hypogaea HOM05D000290 ORTHO05D007415 4.8e-11 71.2 77 49.4
CSS0015563 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D007415 4.8e-11 71.2 80 46.2
CSS0025800 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D007415 4.8e-11 71.2 80 46.2
CsaV3_5G036380 Cucumis sativus L. HOM05D000290 ORTHO05D007415 6.3e-11 70.9 63 52.4
Eucgr.G02820 Eucalyptus grandis HOM05D000290 ORTHO05D007415 6.3e-11 70.9 74 50.0
Atru.chr12.734 Acer truncatum HOM05D000290 ORTHO05D007415 8.3e-11 70.5 83 45.8
Peaxi162Scf00272g00222 Petunia axillaris HOM05D000290 ORTHO05D007415 8.3e-11 70.5 61 57.4
Lj1A916G22 Lonicera japonica HOM05D000290 ORTHO05D007415 1.1e-10 70.1 75 53.3
Actinidia03052 Actinidia chinensis HOM05D000290 ORTHO05D007415 1.8e-10 69.3 58 56.9
Solyc04g049390.3 Solanum lycopersicum HOM05D000290 ORTHO05D007415 2.4e-10 68.9 67 55.2
Sopen04g019370 Solanum pennellii HOM05D000290 ORTHO05D007415 2.4e-10 68.9 67 55.2
CAN.G29.6 Capsicum annuum HOM05D000290 ORTHO05D007415 3.1e-10 68.6 61 55.7
Hma1.2p1_0063F.1_g034380 Hydrangea macrophylla HOM05D000290 ORTHO05D007415 3.1e-10 68.6 80 50.0
Nn2g10759 Nelumbo nucifera HOM05D000290 ORTHO05D007415 4.1e-10 68.2 78 48.7
Lsat_1_v5_gn_9_68761 Lactuca sativa HOM05D000290 ORTHO05D007415 5.4e-10 67.8 63 55.6
Ah.16g106370 Amaranthus hybridus HOM05D000290 ORTHO05D007415 9.1e-10 67.0 78 50.0
TPR.G1810 Trifolium pratense HOM05D000290 ORTHO05D007415 2.7e-09 65.5 81 48.1
Migut.F01770 Erythranthe guttata HOM05D000290 ORTHO05D007415 5.9e-09 64.3 76 44.7
HanXRQChr09g0246431 Helianthus annuus HOM05D000290 ORTHO05D007415 1.3e-08 63.2 68 51.5
PSO063G6866 Papaver somniferum HOM05D000290 ORTHO05D007415 5.0e-08 61.2 80 45.0
Haze_16906 Corylus avellana HOM05D000290 ORTHO05D007415 6.5e-08 60.8 127 34.6
Psat6g185080 Pisum sativum HOM05D000290 ORTHO05D007415 1.1e-07 60.1 81 43.2
ATR0115G028 Amborella trichopoda HOM05D000290 ORTHO05D007415 1.2e-06 56.6 72 41.7
Os02g0805800 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D007415 1.2e-06 56.6 72 40.3
CDE08G1592 Ceratophyllum demersum HOM05D000290 ORTHO05D007415 1.6e-06 56.2 79 38.0
unitig_22.g5127 Utricularia gibba HOM05D000290 ORTHO05D007415 2.1e-06 55.8 61 45.9
Lalb_Chr02g0142071 Lupinus albus HOM05D000290 ORTHO05D007415 2.7e-06 55.5 82 37.8
Phvul.007G093900 Phaseolus vulgaris HOM05D000290 ORTHO05D007415 8.0e-06 53.9 81 40.7
Zm00001eb258280 Zea mays HOM05D000290 ORTHO05D007415 8.0e-06 53.9 74 39.2


User provided reference genes

Program Settings