Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 6.7e-238 827.0 435 100.0
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 5.2e-214 747.7 436 88.1
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 7.2e-208 727.2 421 88.8
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 4.0e-206 721.5 421 88.4
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 3.3e-205 718.4 421 87.9
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 9.7e-205 716.8 417 88.5
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 2.2e-188 662.5 434 80.0
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 8.6e-185 650.6 428 79.4
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 7.3e-184 647.5 428 78.5
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 1.5e-181 639.8 434 77.0
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 4.6e-178 628.2 430 75.3
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 1.0e-177 627.1 429 77.2
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 4.4e-173 611.7 434 73.0
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 1.3e-156 557.0 428 67.1
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 1.3e-132 477.2 416 57.9
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 2.9e-132 476.1 434 56.9
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 1.9e-131 473.4 428 55.8
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 3.2e-131 472.6 423 56.3
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 7.1e-131 471.5 449 55.0
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 4.6e-130 468.8 441 54.2
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 4.6e-130 468.8 416 57.2
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 7.9e-130 468.0 416 57.2
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 1.3e-129 467.2 430 55.3
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 5.7e-128 461.8 441 53.5
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 8.2e-127 458.0 447 51.9
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 1.1e-126 457.6 416 56.2
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 2.2e-124 449.9 424 52.8
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 3.8e-124 449.1 436 52.1
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 3.8e-124 449.1 439 51.9
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.4e-123 447.2 425 54.1
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 1.4e-123 447.2 432 52.3
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 1.9e-123 446.8 429 52.4
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 1.2e-122 444.1 435 52.2
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 1.2e-122 444.1 430 53.0
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 1.6e-122 443.7 439 52.6
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.7e-122 443.0 429 52.9
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.7e-122 443.0 429 52.9
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 4.6e-122 442.2 443 51.2
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 1.0e-121 441.0 435 52.2
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 5.1e-121 438.7 486 48.8
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 1.5e-120 437.2 430 52.1
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 4.3e-120 435.6 421 51.5
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 5.7e-120 435.3 441 50.3
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 2.8e-119 433.0 431 52.7
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 3.7e-119 432.6 431 51.3
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 3.7e-119 432.6 459 49.0
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 1.1e-118 431.0 440 51.4
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 1.8e-118 430.3 422 53.3
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 2.4e-118 429.9 431 52.9
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 3.1e-118 429.5 431 53.1
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 5.3e-118 428.7 427 50.8
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 9.0e-118 427.9 440 50.9
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 2.0e-117 426.8 427 50.8
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 2.6e-117 426.4 419 53.0
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 5.9e-117 425.2 426 50.9
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 2.2e-116 423.3 412 51.9
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 3.8e-116 422.5 422 51.7
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 3.8e-116 422.5 431 51.3
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 6.5e-116 421.8 416 53.4
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 8.5e-116 421.4 429 50.3
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 8.5e-116 421.4 441 49.7
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 2.5e-115 419.9 437 50.8
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 1.2e-114 417.5 432 50.7
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 1.6e-114 417.2 415 52.5
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 1.4e-113 414.1 443 50.1
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 3.0e-113 412.9 431 51.3
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 5.1e-113 412.1 412 51.9
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 2.0e-112 410.2 428 49.3
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 2.5e-112 409.8 434 50.0
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 3.3e-112 409.5 410 51.7
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 5.7e-112 408.7 440 49.8
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 7.4e-112 408.3 365 56.4
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 7.4e-112 408.3 418 50.7
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 1.3e-111 407.5 427 50.8
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 1.4e-110 404.1 419 49.6
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 4.1e-110 402.5 431 50.8
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 5.3e-110 402.1 432 49.5
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 1.0e-108 397.9 428 48.4
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 1.4e-107 394.0 409 51.6
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 2.5e-107 393.3 441 49.4
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 9.4e-107 391.3 420 50.5
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 1.6e-106 390.6 306 60.5
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 6.1e-106 388.7 456 48.7
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 7.9e-106 388.3 436 49.1
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 7.9e-106 388.3 406 51.7
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 7.9e-106 388.3 440 49.5
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 3.3e-104 382.9 371 51.8
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 1.2e-101 374.4 426 48.4
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 3.2e-99 366.3 425 46.6
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 7.2e-99 365.2 407 46.9
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 7.2e-99 365.2 402 47.8
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 1.2e-98 364.4 402 46.3
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 5.2e-97 359.0 292 56.8
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 1.5e-96 357.5 482 42.9
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 9.1e-94 348.2 249 73.9
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 1.5e-91 340.9 461 44.0
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 1.2e-88 331.3 364 51.1
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 7.0e-86 322.0 434 42.4
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 2.0e-85 320.5 432 48.4
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 1.0e-81 308.1 428 39.0
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 1.3e-79 301.2 337 46.6
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.7e-79 300.8 307 51.1
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 1.6e-69 267.7 433 38.8
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 7.8e-53 212.2 296 38.2
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 4.7e-50 203.0 269 39.4
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 1.1e-49 201.8 165 63.6
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 1.4e-49 201.4 149 59.7
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 2.6e-48 197.2 316 35.8
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 5.8e-48 196.1 153 60.1
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 3.7e-47 193.4 349 38.1
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 6.0e-45 186.0 202 44.1
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 2.3e-44 184.1 273 39.6
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 6.6e-44 182.6 146 59.6
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 1.1e-38 165.2 145 53.1
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 9.3e-38 162.2 229 42.8
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 4.6e-37 159.8 153 54.2
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.1e-30 138.7 159 47.8
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 7.1e-30 136.0 275 30.9
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 1.1e-22 112.1 165 44.2
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 3.2e-14 84.0 102 43.1
MCO16G020 Micromonas commoda HOM05D006228 ORTHO05D007847 5.5e-14 83.2 262 22.9
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 2.1e-13 81.3 58 60.3
PRCOL_00002967 Prasinoderma coloniale HOM05D006228 ORTHO05D007847 3.7e-10 70.5 184 25.5


User provided reference genes

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