Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 2.4e-26 121.3 58 100.0
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 5.9e-25 116.7 59 98.3
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 5.9e-25 116.7 59 98.3
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 5.9e-25 116.7 59 98.3
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 4.4e-20 100.5 52 88.5
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 4.4e-20 100.5 52 88.5
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 5.8e-20 100.1 51 90.2
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 7.5e-20 99.8 52 88.5
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 7.5e-20 99.8 52 88.5
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 5.4e-18 93.6 52 80.8
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 7.0e-18 93.2 54 79.6
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 2.7e-17 91.3 53 79.2
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 1.0e-16 89.4 53 77.4
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 1.0e-16 89.4 53 77.4
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 6.6e-16 86.7 59 76.3
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 6.6e-16 86.7 59 76.3
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 8.6e-16 86.3 59 76.3
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 8.6e-16 86.3 59 76.3
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 1.5e-15 85.5 56 73.2
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 4.3e-15 84.0 46 87.0
BcaC01g05378 Brassica carinata HOM05D015100 ORTHO05D031876 5.6e-15 83.6 42 97.6
C03p27210 Brassica napus HOM05D015100 ORTHO05D031876 2.1e-14 81.6 40 100.0
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 6.2e-14 80.1 57 64.9
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 1.4e-13 79.0 47 85.1
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 2.3e-13 78.2 54 61.1
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 5.2e-13 77.0 57 59.6
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 1.5e-12 75.5 58 60.3
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 2.0e-12 75.1 56 60.7
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 5.8e-12 73.6 55 56.4
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 5.8e-12 73.6 56 58.9
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 9.8e-12 72.8 55 56.4
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 9.8e-12 72.8 54 57.4
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 1.3e-11 72.4 57 59.6
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 1.3e-11 72.4 53 62.3
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 1.3e-11 72.4 57 61.4
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 1.3e-11 72.4 56 60.7
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 1.7e-11 72.0 56 62.5
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 2.2e-11 71.6 54 57.4
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.7e-11 70.9 55 52.7
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 3.7e-11 70.9 49 59.2
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 4.9e-11 70.5 55 54.5
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 4.9e-11 70.5 55 54.5
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 4.9e-11 70.5 49 59.2
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 4.9e-11 70.5 56 57.1
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 6.4e-11 70.1 51 64.7
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 6.4e-11 70.1 53 56.6
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 6.4e-11 70.1 50 60.0
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 8.3e-11 69.7 53 54.7
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.1e-10 69.3 62 54.8
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.1e-10 69.3 55 52.7
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 1.9e-10 68.6 40 65.0
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.4e-10 68.2 49 59.2
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 3.2e-10 67.8 54 61.1
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 5.4e-10 67.0 58 51.7
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 5.4e-10 67.0 51 62.7
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 5.4e-10 67.0 51 62.7
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 5.4e-10 67.0 57 59.6
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 5.4e-10 67.0 57 59.6
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 7.1e-10 66.6 56 55.4
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 7.1e-10 66.6 57 59.6
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 1.2e-09 65.9 52 57.7
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 1.2e-09 65.9 51 58.8
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 1.2e-09 65.9 60 58.3
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.2e-09 65.9 60 58.3
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 1.2e-09 65.9 49 59.2
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 2.1e-09 65.1 45 62.2
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 2.1e-09 65.1 45 62.2
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 2.1e-09 65.1 55 54.5
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 4.6e-09 63.9 52 51.9
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 6.0e-09 63.5 55 54.5
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 7.8e-09 63.2 54 51.9
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 1.0e-08 62.8 57 47.4
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 1.0e-08 62.8 58 50.0
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 1.3e-08 62.4 54 48.1
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 2.3e-08 61.6 46 56.5
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 3.0e-08 61.2 42 54.8
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.0e-08 61.2 50 54.0
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 3.0e-08 61.2 57 52.6
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 3.9e-08 60.8 42 57.1
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 5.1e-08 60.5 53 49.1
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 5.1e-08 60.5 50 54.0
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 6.6e-08 60.1 50 54.0
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 1.1e-07 59.3 44 54.5
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 1.1e-07 59.3 44 54.5
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 1.5e-07 58.9 44 52.3
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 1.9e-07 58.5 42 50.0
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.5e-07 58.2 69 42.0
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 5.6e-07 57.0 41 61.0
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 5.6e-07 57.0 42 50.0
Aa31LG3G1380 Aethionema arabicum HOM05D007120 ORTHO05D008881 2.1e-06 55.1 39 74.4
BcaC01g00581 Brassica carinata HOM05D007120 ORTHO05D008881 2.8e-06 54.7 59 55.9
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 2.8e-06 54.7 44 47.7
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.8e-06 54.7 94 35.1
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.7e-06 53.9 77 44.2


User provided reference genes

Program Settings