Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03439 Brassica carinata HOM05D005723 ORTHO05D005968 3.3e-158 561.6 278 100.0
A03p23560 Brassica napus HOM05D005723 ORTHO05D005968 1.5e-150 536.2 279 96.1
BraA03t11573Z Brassica rapa HOM05D005723 ORTHO05D005968 9.8e-150 533.5 279 95.7
BolC3t15179H Brassica oleracea HOM05D005723 ORTHO05D005968 1.4e-148 529.6 278 95.3
BcaC01g05310 Brassica carinata HOM05D005723 ORTHO05D005968 4.1e-148 528.1 278 95.0
AL4G40430 Arabidopsis lyrata HOM05D005723 ORTHO05D005968 7.5e-142 507.3 285 90.5
AT2G42070 Arabidopsis thaliana HOM05D005723 ORTHO05D005968 3.7e-141 505.0 282 90.8
Carub.0004s2440 Capsella rubella HOM05D005723 ORTHO05D005968 6.3e-141 504.2 285 89.8
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 1.8e-140 502.7 284 89.4
Thhalv10017043m.g Eutrema salsugineum HOM05D005723 ORTHO05D005968 1.7e-138 496.1 287 89.5
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 2.9e-138 495.4 295 86.4
Aa31LG1G24130 Aethionema arabicum HOM05D005723 ORTHO05D005968 3.3e-137 491.9 290 86.9
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 2.8e-136 488.8 287 86.4
C03p28100 Brassica napus HOM05D005723 ORTHO05D005968 3.0e-135 485.3 265 92.5
Sp4g24280 Schrenkiella parvula HOM05D005723 ORTHO05D005968 6.4e-133 477.6 290 85.9
BraA05t19263Z Brassica rapa HOM05D005723 ORTHO05D005968 1.1e-132 476.9 280 86.1
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 3.0e-130 468.8 280 85.7
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 3.0e-130 468.8 280 85.7
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 2.5e-129 465.7 280 85.4
THA.LOC104802583 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 1.9e-121 439.5 296 75.7
THA.LOC104824477 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 3.9e-114 415.2 296 73.3
Gohir.A09G128200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.1e-108 397.1 278 72.3
Gohir.D09G124200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 2.7e-107 392.5 278 71.6
Gorai.006G143000 Gossypium raimondii HOM05D005723 ORTHO05D005968 1.3e-106 390.2 279 71.7
CiPaw.09G030000 Carya illinoinensis HOM05D005723 ORTHO05D005968 2.4e-103 379.4 291 67.4
Cfa020161 Carpinus fangiana HOM05D005723 ORTHO05D005968 3.4e-102 375.6 293 67.6
RcHm_v2.0_Chr3g0479531 Rosa chinensis HOM05D005723 ORTHO05D005968 4.4e-102 375.2 289 66.8
Thecc.05G171800 Theobroma cacao HOM05D005723 ORTHO05D005968 9.9e-102 374.0 293 66.9
FAN14G2504 Fragaria x ananassa HOM05D005723 ORTHO05D005968 1.3e-101 373.6 304 65.8
Manes.08G043200 Manihot esculenta HOM05D005723 ORTHO05D005968 1.7e-101 373.2 295 65.8
TWI53G1132 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 1.1e-100 370.5 297 65.7
FAN02G2166 Fragaria x ananassa HOM05D005723 ORTHO05D005968 3.2e-100 369.0 303 65.3
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 5.4e-100 368.2 299 64.5
Atru.chr8.1119 Acer truncatum HOM05D005723 ORTHO05D005968 4.6e-99 365.2 301 62.8
Migut.K00036 Erythranthe guttata HOM05D005723 ORTHO05D005968 1.7e-98 363.2 296 64.2
Sabra06G0148000 Salix brachista HOM05D005723 ORTHO05D005968 1.7e-98 363.2 304 62.2
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 5.1e-98 361.7 202 81.7
Actinidia17274 Actinidia chinensis HOM05D005723 ORTHO05D005968 6.6e-98 361.3 290 64.5
QL07p023897 Quercus lobata HOM05D005723 ORTHO05D005968 1.1e-97 360.5 299 64.2
MD12G1056700 Malus domestica HOM05D005723 ORTHO05D005968 1.5e-97 360.1 299 64.5
Potri.006G192800 Populus trichocarpa HOM05D005723 ORTHO05D005968 1.9e-97 359.8 234 73.5
Potri.016G045300 Populus trichocarpa HOM05D005723 ORTHO05D005968 1.9e-97 359.8 250 69.6
Prupe.7G077500 Prunus persica HOM05D005723 ORTHO05D005968 2.5e-97 359.4 304 63.8
Psat3g068400 Pisum sativum HOM05D005723 ORTHO05D005968 4.3e-97 358.6 250 71.6
Solyc03g062830.3 Solanum lycopersicum HOM05D005723 ORTHO05D005968 9.6e-97 357.5 286 62.6
Hund24799 Selenicereus undatus HOM05D005723 ORTHO05D005968 1.3e-96 357.1 252 71.8
TPR.G18229 Trifolium pratense HOM05D005723 ORTHO05D005968 1.6e-96 356.7 204 80.9
EL10Ac3g06909 Beta vulgaris HOM05D005723 ORTHO05D005968 2.8e-96 355.9 283 64.3
Peaxi162Scf00258g00623 Petunia axillaris HOM05D005723 ORTHO05D005968 4.8e-96 355.1 295 61.7
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 4.8e-96 355.1 293 61.8
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 6.2e-96 354.8 294 62.2
Sopen03g015150 Solanum pennellii HOM05D005723 ORTHO05D005968 1.1e-95 354.0 286 62.2
Sc13g0002300 Simmondsia chinensis HOM05D005723 ORTHO05D005968 1.4e-95 353.6 293 63.8
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 3.1e-95 352.4 283 67.1
GSVIVG01033492001 Vitis vinifera HOM05D005723 ORTHO05D005968 9.0e-95 350.9 226 72.6
Ca_08526_v3 Cicer arietinum L. HOM05D005723 ORTHO05D005968 2.6e-94 349.4 275 65.1
Medtr7g093280 Medicago truncatula HOM05D005723 ORTHO05D005968 7.6e-94 347.8 243 70.8
HanXRQChr13g0390481 Helianthus annuus HOM05D005723 ORTHO05D005968 1.3e-93 347.1 278 62.9
Lju124A25G33 Lonicera japonica HOM05D005723 ORTHO05D005968 1.3e-93 347.1 206 76.7
Phvul.001G142700 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 2.2e-93 346.3 246 67.9
FvH4_6g22180 Fragaria vesca HOM05D005723 ORTHO05D005968 3.8e-93 345.5 274 67.9
VMungo1383G0807 Vigna mungo HOM05D005723 ORTHO05D005968 3.8e-93 345.5 246 68.3
Lj1g0008741 Lotus japonicus HOM05D005723 ORTHO05D005968 6.4e-93 344.7 249 69.1
SGA_v2.0_scaffold274G46488 Striga asiatica HOM05D005723 ORTHO05D005968 8.4e-93 344.4 291 61.9
CANSAT64G2568 Cannabis sativa HOM05D005723 ORTHO05D005968 2.4e-92 342.8 292 62.3
Glyma.19G148100 Glycine max HOM05D005723 ORTHO05D005968 4.2e-92 342.0 264 64.8
MELO3C009621.2 Cucumis melo HOM05D005723 ORTHO05D005968 5.4e-92 341.7 240 70.0
Glyma.09G111000 Glycine max HOM05D005723 ORTHO05D005968 7.1e-92 341.3 206 76.7
Sed0013306 Sechium edule HOM05D005723 ORTHO05D005968 9.3e-92 340.9 308 61.7
Lalb_Chr18g0047891 Lupinus albus HOM05D005723 ORTHO05D005968 1.6e-91 340.1 228 71.1
Aqoxy1G00026 Aquilegia oxysepala HOM05D005723 ORTHO05D005968 3.5e-91 339.0 204 74.5
FAN05G3703 Fragaria x ananassa HOM05D005723 ORTHO05D005968 7.9e-91 337.8 286 65.0
Phvul.007G260200 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 1.0e-90 337.4 217 73.7
Nitab4.5_0000324g0030 Nicotiana tabacum HOM05D005723 ORTHO05D005968 3.9e-90 335.5 200 75.5
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 6.7e-90 334.7 206 75.7
Cc06_g15920 Coffea canephora HOM05D005723 ORTHO05D005968 1.9e-89 333.2 317 57.4
Nn2g15696 Nelumbo nucifera HOM05D005723 ORTHO05D005968 1.3e-88 330.5 295 56.6
PGR142G4063 Punica granatum HOM05D005723 ORTHO05D005968 5.3e-87 325.1 266 63.2
Ciclev10013558m.g Citrus clementina HOM05D005723 ORTHO05D005968 9.0e-87 324.3 238 66.8
Rhsim04G0096600 Rhododendron simsii HOM05D005723 ORTHO05D005968 2.6e-86 322.8 274 62.8
MBI08_g23085_MAGBIO Magnolia biondii HOM05D005723 ORTHO05D005968 1.2e-83 313.9 202 71.8
CDE05G1067 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 1.0e-82 310.8 196 71.4
Lsat_1_v5_gn_5_163580 Lactuca sativa HOM05D005723 ORTHO05D005968 1.0e-82 310.8 286 57.7
arahy.Tifrunner.gnm1.ann1.USMU0G Arachis hypogaea HOM05D005723 ORTHO05D005968 1.3e-82 310.5 267 64.8
MSTRG.6477 Avicennia marina HOM05D005723 ORTHO05D005968 1.8e-82 310.1 290 56.6
MD14G1055000 Malus domestica HOM05D005723 ORTHO05D005968 1.8e-82 310.1 229 70.3
Glyma.03G145000 Glycine max HOM05D005723 ORTHO05D005968 3.0e-82 309.3 272 61.0
Zm00001eb320790 Zea mays HOM05D005723 ORTHO05D005968 3.0e-82 309.3 210 68.6
DCAR_019848 Daucus carota HOM05D005723 ORTHO05D005968 5.1e-82 308.5 259 63.7
Dinv14303 Davidia involucrata HOM05D005723 ORTHO05D005968 5.1e-82 308.5 259 64.1
CDE05G2791 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 5.6e-81 305.1 279 58.8
Cpa.g.sc85.50 Carica papaya HOM05D005723 ORTHO05D005968 7.4e-81 304.7 294 58.5
ClCG10G017570 Citrullus lanatus HOM05D005723 ORTHO05D005968 9.6e-81 304.3 311 56.3
Nitab4.5_0002488g0020 Nicotiana tabacum HOM05D005723 ORTHO05D005968 6.2e-80 301.6 277 58.5
SalBow1G1145 Salvia bowleyana HOM05D005723 ORTHO05D005968 6.2e-80 301.6 256 61.7
Zm00001eb104410 Zea mays HOM05D005723 ORTHO05D005968 8.2e-80 301.2 195 70.3
Oeu024483.2 Olea europaea HOM05D005723 ORTHO05D005968 1.4e-79 300.4 250 62.4
HPP92_009024 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.9e-76 290.0 210 64.8
PSO384G0309 Papaver somniferum HOM05D005723 ORTHO05D005968 2.1e-75 286.6 296 52.4
PSO339G0271 Papaver somniferum HOM05D005723 ORTHO05D005968 1.3e-74 283.9 286 52.4
Pp3c12_9930 Physcomitrium patens HOM05D005723 ORTHO05D005968 3.0e-74 282.7 250 55.6
ATR0807G138 Amborella trichopoda HOM05D005723 ORTHO05D005968 6.7e-74 281.6 211 64.9
arahy.Tifrunner.gnm1.ann1.4E6ATU Arachis hypogaea HOM05D005723 ORTHO05D005968 6.9e-71 271.6 259 59.1
CsaV3_3G038770 Cucumis sativus L. HOM05D005723 ORTHO05D005968 2.0e-70 270.0 274 56.6
AUR62015361 Chenopodium quinoa HOM05D005723 ORTHO05D005968 5.9e-70 268.5 157 79.6
SMO358G0738 Selaginella moellendorffii HOM05D005723 ORTHO05D005968 3.6e-67 259.2 195 60.5
HanXRQChr01g0009761 Helianthus annuus HOM05D005723 ORTHO05D005968 1.8e-66 256.9 157 74.5
ECA248G2266 Erigeron canadensis HOM05D005723 ORTHO05D005968 3.9e-66 255.8 157 75.2
Oeu034265.1 Olea europaea HOM05D005723 ORTHO05D005968 2.0e-65 253.4 156 75.0
AUR62012024 Chenopodium quinoa HOM05D005723 ORTHO05D005968 5.7e-65 251.9 151 77.5
arahy.Tifrunner.gnm1.ann1.WEU379 Arachis hypogaea HOM05D005723 ORTHO05D005968 1.1e-60 237.7 327 47.7
Cre06.g285200 Chlamydomonas reinhardtii HOM05D005723 ORTHO05D005968 1.1e-60 237.7 196 55.1
TWI74G1261 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 2.6e-57 226.5 248 52.8
unitig_748.g7589 Utricularia gibba HOM05D005723 ORTHO05D005968 1.4e-55 220.7 141 73.0
SEGI_25574 Sequoiadendron giganteum HOM05D005723 ORTHO05D005968 1.3e-53 214.2 152 69.7
Haze_19996 Corylus avellana HOM05D005723 ORTHO05D005968 3.8e-53 212.6 124 80.6
Actinidia38586 Actinidia chinensis HOM05D005723 ORTHO05D005968 1.1e-52 211.1 276 46.0
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 2.5e-52 209.9 197 49.7
C05p20370 Brassica napus HOM05D005723 ORTHO05D005968 3.6e-51 206.1 115 92.2
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 3.6e-51 206.1 115 92.2
Sed0026560 Sechium edule HOM05D005723 ORTHO05D005968 6.7e-50 201.8 194 53.1
MSTRG.10844 Avicennia marina HOM05D005723 ORTHO05D005968 2.8e-48 196.4 124 75.8
Os09g0553300 Oryza sativa ssp. japonica HOM05D005723 ORTHO05D005968 6.5e-45 185.3 111 73.9
arahy.Tifrunner.gnm1.ann1.HLHI9C Arachis hypogaea HOM05D005723 ORTHO05D005968 1.2e-43 181.0 117 76.1
HPP92_009080 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.2e-43 181.0 133 64.7
AagrBONN_evm.TU.Sc2ySwM_117.3227 Anthoceros agrestis HOM05D005723 ORTHO05D005968 3.6e-43 179.5 133 61.7
Mapoly0013s0082 Marchantia polymorpha HOM05D005723 ORTHO05D005968 4.8e-40 169.1 181 50.3
Pp3c3_14150 Physcomitrium patens HOM05D005723 ORTHO05D005968 1.3e-32 144.4 208 43.3
CBR_g29504 Chara braunii HOM05D005723 ORTHO05D005968 2.2e-32 143.7 159 45.3
BolC3t15180H Brassica oleracea HOM05D005723 ORTHO05D005968 7.0e-31 138.7 78 89.7
Gohir.A10G137800 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.2e-30 137.9 90 77.8
Gohir.A13G075901 Gossypium hirsutum HOM05D005723 ORTHO05D005968 2.8e-27 126.7 78 78.2
BcaC05g26057 Brassica carinata HOM05D005723 ORTHO05D005968 9.2e-23 111.7 63 88.9
MCO15G614 Micromonas commoda HOM05D005723 ORTHO05D005968 2.3e-18 97.1 168 35.7
vmacro09121 Vaccinium macrocarpon HOM05D005723 ORTHO05D005968 1.2e-17 94.7 75 58.7
Haze_19995 Corylus avellana HOM05D005723 ORTHO05D005968 5.8e-17 92.4 98 52.0
FAN09G1257 Fragaria x ananassa HOM05D005723 ORTHO05D005968 4.7e-11 72.8 130 40.8
CAN.G85.14 Capsicum annuum HOM05D000829 ORTHO05D000690 7.5e-09 65.5 190 28.4
Peaxi162Scf00006g00314 Petunia axillaris HOM05D000829 ORTHO05D000690 7.5e-09 65.5 190 27.4
Solyc12g015700.3 Solanum lycopersicum HOM05D000829 ORTHO05D000690 7.5e-09 65.5 189 28.0
Sopen12g007620 Solanum pennellii HOM05D000829 ORTHO05D000690 7.5e-09 65.5 189 28.0
PGSC0003DMG400029796 Solanum tuberosum HOM05D000829 ORTHO05D000690 7.5e-09 65.5 189 28.0
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 7.1e-07 58.9 137 30.7
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 9.2e-07 58.5 161 28.6
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.2e-06 58.2 186 27.4
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 1.6e-06 57.8 157 31.2
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.6e-06 57.8 141 34.0
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.6e-06 57.8 107 33.6
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 2.1e-06 57.4 137 30.7
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.1e-06 57.4 137 30.7
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 2.1e-06 57.4 137 30.7
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 2.7e-06 57.0 138 32.6
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 2.7e-06 57.0 136 30.9
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 2.7e-06 57.0 141 32.6
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 2.7e-06 57.0 142 35.2
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 3.5e-06 56.6 139 31.7
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 3.5e-06 56.6 156 31.4
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 3.5e-06 56.6 156 31.4
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.5e-06 56.6 137 29.9
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 3.5e-06 56.6 107 33.6
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 6.0e-06 55.8 156 31.4
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 6.0e-06 55.8 102 32.4
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 7.8e-06 55.5 154 29.2
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 7.8e-06 55.5 140 30.7


User provided reference genes

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