Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 4.2e-190 667.9 352 100.0
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 6.3e-77 292.0 335 55.2
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 2.4e-76 290.0 335 54.9
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.0e-75 287.0 331 55.0
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 2.8e-61 240.0 331 50.5
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 5.0e-50 202.6 321 44.5
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 5.5e-49 199.1 231 53.7
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-48 197.6 325 44.6
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 6.8e-47 192.2 328 44.2
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-46 191.0 317 43.2
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 8.3e-45 185.3 368 38.6
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 8.3e-45 185.3 367 39.5
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 3.1e-44 183.3 376 38.0
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 2.0e-43 180.6 377 39.0
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 5.9e-43 179.1 381 37.3
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 2.1e-40 170.6 367 37.6
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.7e-40 170.2 346 39.9
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 3.6e-40 169.9 317 41.0
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 6.1e-40 169.1 367 37.1
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 6.8e-39 165.6 367 37.1
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 8.8e-39 165.2 367 37.1
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 8.8e-39 165.2 367 37.1
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 2.0e-38 164.1 371 35.3
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 4.9e-37 159.5 306 39.9
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 6.3e-37 159.1 310 40.6
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.9e-33 147.5 370 32.4
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 5.6e-33 146.0 367 33.2
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 7.3e-33 145.6 366 33.6
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 1.6e-32 144.4 367 33.0
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.6e-32 144.4 371 34.0
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 2.8e-32 143.7 378 32.8
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 4.7e-32 142.9 369 33.6
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 8.0e-32 142.1 364 32.7
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 8.0e-32 142.1 364 32.7
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.0e-31 141.7 368 32.3
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 1.4e-31 141.4 368 33.2
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.8e-31 141.0 360 34.4
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.8e-31 141.0 366 32.5
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.3e-31 140.6 368 32.1
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 4.0e-31 139.8 373 32.7
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 6.8e-31 139.0 369 33.3
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 8.9e-31 138.7 371 33.2
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.2e-30 138.3 366 33.1
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.2e-30 138.3 371 33.2
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.4e-30 136.7 368 31.8
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 5.7e-30 136.0 366 32.0
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 5.7e-30 136.0 369 32.5
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 9.8e-30 135.2 368 32.6
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 9.8e-30 135.2 368 32.1
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 9.8e-30 135.2 368 32.3
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 9.8e-30 135.2 372 32.5
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 9.8e-30 135.2 362 32.6
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 9.8e-30 135.2 368 30.7
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.2e-29 134.0 368 32.9
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.2e-29 134.0 366 32.5
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 2.9e-29 133.7 370 31.6
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 2.9e-29 133.7 369 32.0
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.7e-29 133.3 355 33.0
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 3.7e-29 133.3 371 31.8
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.1e-28 131.7 372 31.7
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.4e-28 131.3 369 32.2
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.4e-28 131.3 365 32.1
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.8e-28 131.0 369 31.2
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 3.2e-28 130.2 378 31.7
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 7.0e-28 129.0 373 31.1
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.6e-27 127.9 374 31.3
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 4.6e-27 126.3 367 31.6
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.6e-27 126.3 370 30.5
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 5.9e-27 125.9 366 31.4
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.0e-26 125.2 365 31.2
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-26 124.8 384 29.9
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 2.3e-26 124.0 361 31.3
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 2.3e-26 124.0 372 32.0
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 3.9e-26 123.2 362 33.1
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 6.6e-26 122.5 369 33.1
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.6e-26 122.1 368 31.0
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.6e-26 122.1 368 31.0
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.6e-26 122.1 368 31.0
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.1e-25 121.7 365 29.9
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 1.5e-25 121.3 369 30.6
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.9e-25 120.9 368 30.4
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 2.5e-25 120.6 368 30.4
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-25 120.6 368 31.0
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 3.3e-25 120.2 362 31.8
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.3e-25 119.8 368 30.4
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 7.3e-25 119.0 362 29.3
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 9.5e-25 118.6 370 31.1
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 2.1e-24 117.5 367 30.0
BolC5t33660H Brassica oleracea HOM05D001997 ORTHO05D004620 3.6e-24 116.7 312 34.0
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 3.6e-24 116.7 363 30.0
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 3.6e-24 116.7 366 31.1
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 1.0e-23 115.2 364 28.6
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.0e-23 115.2 357 30.5
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 1.4e-23 114.8 365 29.3
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.3e-23 114.0 144 45.8
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 3.1e-23 113.6 356 29.2
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 2.0e-22 110.9 374 30.5
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 4.4e-22 109.8 366 29.8
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 9.8e-22 108.6 359 30.6
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 9.8e-22 108.6 359 30.6
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.3e-21 108.2 369 29.5
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 2.2e-21 107.5 344 28.8
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 2.9e-21 107.1 343 30.0
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 4.9e-21 106.3 349 30.7
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 6.4e-21 105.9 368 28.8
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.1e-20 105.1 346 28.9
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 1.1e-20 105.1 364 29.4
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.4e-20 104.0 309 30.4
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 4.1e-20 103.2 321 30.5
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 5.4e-20 102.8 321 30.2
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 5.4e-20 102.8 363 27.8
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.2e-19 101.7 359 29.8
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 1.2e-19 101.7 369 28.5
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 2.0e-19 100.9 330 29.7
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.0e-19 100.9 139 43.9
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 1.3e-18 98.2 363 28.4
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 8.6e-18 95.5 345 25.8
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.5e-17 94.0 306 28.4
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 2.5e-17 94.0 145 38.6
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 3.3e-17 93.6 322 29.8
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 5.6e-17 92.8 195 37.4
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 2.1e-16 90.9 145 36.6
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 6.2e-16 89.4 362 26.8
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-15 88.2 50 86.0
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 4.0e-15 86.7 150 36.7
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 6.8e-15 85.9 149 35.6
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 1.5e-14 84.7 87 52.9
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 5.8e-14 82.8 148 35.1
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.5e-14 82.4 220 30.5
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 2.9e-13 80.5 357 25.2
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.9e-13 80.5 222 31.5
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.7e-13 80.1 269 27.1
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 1.1e-12 78.6 287 26.1
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 2.4e-12 77.4 279 27.2
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 5.4e-12 76.3 77 57.1
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 5.4e-12 76.3 77 57.1
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-11 74.7 80 55.0
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 7.8e-11 72.4 52 67.3
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 1.3e-10 71.6 90 47.8
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.3e-10 71.6 90 47.8
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 1.7e-10 71.2 83 50.6
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 1.2e-08 65.1 83 48.2
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-08 63.5 94 39.4
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 4.7e-08 63.2 61 60.7
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 3.1e-07 60.5 78 46.2
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 1.2e-06 58.5 81 45.7
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.5e-06 58.2 93 40.9
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.5e-06 58.2 141 32.6
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.6e-06 57.4 138 33.3
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 3.4e-06 57.0 85 41.2


User provided reference genes

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