Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 6.7e-58 227.3 125 100.0
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 7.0e-55 217.2 124 96.8
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-54 215.7 124 96.0
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 5.0e-53 211.1 122 96.7
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-52 209.9 122 95.9
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.1e-52 209.9 125 92.8
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.9e-52 209.1 122 93.4
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 2.5e-52 208.8 124 93.5
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 3.2e-52 208.4 121 95.9
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 3.2e-52 208.4 121 95.9
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 4.2e-52 208.0 119 95.0
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 4.2e-52 208.0 122 94.3
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 4.2e-52 208.0 118 96.6
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 7.2e-52 207.2 122 95.1
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 9.4e-52 206.8 121 95.9
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 9.4e-52 206.8 121 95.9
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 3.6e-51 204.9 119 93.3
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 6.1e-51 204.1 119 93.3
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 1.0e-50 203.4 121 94.2
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.8e-50 202.6 121 93.4
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.0e-49 199.1 122 91.0
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.7e-45 186.0 114 86.8
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 3.8e-45 184.9 111 86.5
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.8e-45 184.9 111 86.5
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 5.0e-45 184.5 119 86.6
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 6.5e-45 184.1 122 81.1
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 8.5e-45 183.7 119 83.2
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.9e-44 182.6 119 82.4
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 4.2e-44 181.4 111 85.6
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 9.4e-44 180.3 110 86.4
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.6e-43 179.5 119 85.7
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.6e-43 179.5 114 83.3
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.6e-43 179.5 122 82.0
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 2.1e-43 179.1 122 78.7
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 2.7e-43 178.7 114 82.5
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 3.6e-43 178.3 109 85.3
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 3.6e-43 178.3 109 85.3
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 3.6e-43 178.3 119 81.5
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.7e-43 177.9 114 82.5
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 4.7e-43 177.9 114 82.5
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 6.1e-43 177.6 111 84.7
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.0e-42 176.8 114 80.7
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.4e-42 176.4 111 81.1
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 1.8e-42 176.0 109 84.4
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-42 175.6 114 80.7
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 2.3e-42 175.6 106 86.8
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 6.8e-42 174.1 114 80.7
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 8.8e-42 173.7 108 85.2
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.2e-41 173.3 119 78.2
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.2e-41 173.3 111 81.1
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.5e-41 172.9 114 78.9
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-41 172.6 105 89.5
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 2.0e-41 172.6 109 83.5
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 2.0e-41 172.6 111 78.4
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.6e-41 172.2 114 78.1
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 4.4e-41 171.4 111 81.1
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 5.7e-41 171.0 111 82.9
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 9.8e-41 170.2 121 75.2
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 9.8e-41 170.2 125 74.4
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 1.3e-40 169.9 114 78.1
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.7e-40 169.5 115 75.7
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.7e-40 168.3 110 80.9
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 4.8e-40 167.9 110 80.9
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 4.8e-40 167.9 110 80.9
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 6.3e-40 167.5 110 79.1
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 8.3e-40 167.2 111 79.3
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.1e-39 166.8 111 79.3
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 2.4e-39 165.6 111 79.3
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 3.1e-39 165.2 110 77.3
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 3.1e-39 165.2 111 74.8
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 5.4e-39 164.5 122 70.5
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 7.0e-39 164.1 101 84.2
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.2e-38 163.3 113 77.0
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.2e-38 163.3 113 77.0
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.6e-38 162.9 128 72.7
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.5e-38 161.8 101 82.2
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 4.5e-38 161.4 100 83.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-38 161.4 100 83.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-38 161.4 100 83.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-38 161.4 100 83.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 5.9e-38 161.0 111 73.9
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 5.9e-38 161.0 111 73.9
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 7.7e-38 160.6 123 70.7
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-37 160.2 115 75.7
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.7e-37 159.5 100 82.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 3.8e-37 158.3 110 75.5
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 6.5e-37 157.5 111 73.0
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.5e-36 156.4 111 72.1
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.5e-36 156.4 110 75.5
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.5e-36 155.6 108 75.9
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 9.5e-36 153.7 100 76.0
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 9.5e-36 153.7 110 71.8
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 9.5e-36 153.7 110 71.8
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 9.5e-36 153.7 110 71.8
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.2e-35 153.3 117 66.7
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.6e-35 152.9 111 71.2
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 2.1e-35 152.5 125 66.4
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.1e-35 152.5 110 71.8
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.1e-35 152.5 110 71.8
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 2.8e-35 152.1 117 68.4
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 3.6e-35 151.8 99 80.8
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 6.1e-35 151.0 110 72.7
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 8.0e-35 150.6 113 68.1
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 8.0e-35 150.6 125 66.4
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.0e-34 150.2 105 71.4
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.0e-34 150.2 103 72.8
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 3.0e-34 148.7 96 79.2
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 4.0e-34 148.3 124 64.5
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 4.0e-34 148.3 114 68.4
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 5.2e-34 147.9 124 66.1
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 1.2e-33 146.7 120 63.3
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 1.5e-33 146.4 113 69.0
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 2.6e-33 145.6 109 66.1
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 3.4e-33 145.2 90 88.9
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 3.4e-33 145.2 90 88.9
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 7.5e-33 144.1 98 72.4
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.5e-33 144.1 113 70.8
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.3e-32 143.3 124 62.1
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 2.8e-32 142.1 109 66.1
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.1e-31 140.2 96 75.0
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.4e-31 139.0 95 77.9
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-30 136.7 85 81.2
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.7e-29 132.9 96 74.0
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 3.3e-28 128.6 103 66.0
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.8e-26 122.9 112 56.2
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.0e-26 122.1 82 78.0
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.2e-25 120.2 107 61.7
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.5e-25 119.8 79 77.2
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.5e-20 103.2 67 80.6
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.6e-19 99.8 100 53.0
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 3.6e-19 98.6 69 73.9
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 3.6e-19 98.6 102 55.9
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.7e-19 98.2 57 89.5
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.1e-18 97.1 68 70.6
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.8e-18 96.3 64 68.8
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.5e-17 93.2 70 68.6
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 4.9e-16 88.2 115 54.8
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-15 86.7 74 63.5
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 5.4e-15 84.7 56 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 2.1e-14 82.8 96 55.2
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 4.6e-14 81.6 73 61.6
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 6.0e-14 81.3 85 56.5
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 8.6e-13 77.4 68 61.8
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 3.3e-12 75.5 103 44.7
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 4.7e-11 71.6 115 40.9
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 3.1e-10 68.9 45 77.8
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 3.4e-09 65.5 82 50.0
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 3.4e-09 65.5 56 60.7
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 1.3e-08 63.5 62 53.2
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.7e-08 63.2 35 88.6
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 2.9e-08 62.4 52 61.5
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 3.7e-08 62.0 122 33.6
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 1.1e-07 60.5 47 63.8
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 1.9e-07 59.7 59 50.8
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 6.0e-06 54.7 67 49.3


User provided reference genes

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