Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 8.8e-165 583.6 296 100.0
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 6.4e-107 391.3 326 69.6
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 1.1e-98 364.0 330 65.8
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 4.1e-98 362.1 330 65.5
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 7.3e-95 351.3 330 64.2
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 1.1e-93 347.4 324 64.8
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 4.4e-92 342.0 330 62.4
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 8.4e-91 337.8 324 63.6
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 6.9e-85 318.2 321 61.4
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 9.0e-85 317.8 330 60.3
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 2.0e-84 316.6 333 60.7
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 3.4e-84 315.8 322 60.6
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 5.8e-84 315.1 332 59.9
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 1.7e-83 313.5 330 59.1
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.4e-82 310.5 330 60.0
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.4e-82 309.7 330 60.0
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 2.3e-80 303.1 320 59.7
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 3.0e-80 302.8 320 59.7
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 5.1e-80 302.0 320 59.7
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 1.9e-79 300.1 325 56.9
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.1e-77 294.3 325 56.9
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.4e-77 293.1 325 57.2
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 6.4e-75 285.0 325 55.4
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 2.4e-74 283.1 324 55.6
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 2.4e-74 283.1 327 54.7
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 5.5e-74 282.0 335 53.7
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 5.5e-74 282.0 325 56.0
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 2.8e-70 269.6 322 55.0
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 1.1e-58 231.1 320 47.8
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 2.5e-58 229.9 324 47.5
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.2e-58 229.6 324 47.5
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.5e-58 228.8 324 47.2
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 1.6e-57 227.3 295 48.8
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 3.6e-57 226.1 257 52.5
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 4.6e-57 225.7 274 50.4
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 7.9e-57 224.9 257 52.1
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 1.0e-56 224.6 253 52.6
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.3e-56 224.2 325 45.2
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 2.3e-56 223.4 253 53.0
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.9e-56 222.6 325 44.9
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 5.1e-56 222.2 272 50.7
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 8.7e-56 221.5 260 52.3
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 1.1e-55 221.1 253 52.6
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.5e-55 220.7 325 44.9
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 2.5e-55 219.9 253 52.2
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 2.5e-55 219.9 253 52.6
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 3.3e-55 219.5 322 46.3
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 3.3e-55 219.5 255 52.2
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 3.3e-55 219.5 259 52.1
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 4.3e-55 219.2 253 51.8
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 4.3e-55 219.2 253 51.8
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 5.7e-55 218.8 260 51.9
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 5.7e-55 218.8 267 50.9
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 7.4e-55 218.4 246 51.6
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 7.4e-55 218.4 335 44.5
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 9.7e-55 218.0 293 46.4
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.3e-54 217.6 292 49.0
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 1.3e-54 217.6 255 51.8
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 2.2e-54 216.9 284 49.3
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 2.2e-54 216.9 313 44.7
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.8e-54 216.5 325 44.3
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 3.7e-54 216.1 315 44.4
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 3.7e-54 216.1 303 46.2
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 4.8e-54 215.7 279 48.7
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 6.3e-54 215.3 234 53.8
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.4e-53 214.2 259 51.4
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.4e-53 214.2 284 48.2
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 2.4e-53 213.4 286 47.9
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 3.1e-53 213.0 283 47.3
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 6.9e-53 211.8 290 47.6
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 9.1e-53 211.5 313 45.7
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 9.1e-53 211.5 253 50.2
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 2.0e-52 210.3 317 45.7
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.6e-52 209.9 276 46.0
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 3.4e-52 209.5 255 50.2
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 3.4e-52 209.5 254 51.2
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 4.5e-52 209.1 316 42.7
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 4.5e-52 209.1 263 48.3
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.3e-51 207.6 329 46.5
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.2e-51 206.8 281 45.9
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 2.9e-51 206.5 250 48.8
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 3.8e-51 206.1 251 50.6
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 5.0e-51 205.7 319 43.3
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 5.0e-51 205.7 293 43.3
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 5.0e-51 205.7 326 44.8
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 6.5e-51 205.3 251 49.4
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 6.5e-51 205.3 259 48.6
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 6.5e-51 205.3 332 43.4
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 8.5e-51 204.9 284 46.1
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.1e-50 204.5 290 44.8
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 1.1e-50 204.5 280 46.4
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.4e-50 204.1 269 47.6
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 1.9e-50 203.8 319 43.3
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 1.9e-50 203.8 282 47.5
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.2e-50 203.0 259 46.7
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 3.2e-50 203.0 255 49.4
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 4.2e-50 202.6 257 48.2
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 4.2e-50 202.6 303 42.2
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 4.2e-50 202.6 259 48.6
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 5.5e-50 202.2 269 46.5
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 7.2e-50 201.8 287 43.9
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 9.4e-50 201.4 294 42.9
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 9.4e-50 201.4 251 48.2
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 9.4e-50 201.4 259 47.1
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.2e-49 201.1 303 42.6
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 1.2e-49 201.1 249 51.0
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 1.2e-49 201.1 284 46.8
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.6e-49 200.7 254 47.2
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 1.6e-49 200.7 341 43.4
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.7e-49 199.9 305 44.6
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 2.7e-49 199.9 249 48.6
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 3.6e-49 199.5 286 44.4
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 6.1e-49 198.7 286 44.1
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 7.9e-49 198.4 249 48.6
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 7.9e-49 198.4 252 48.8
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 1.0e-48 198.0 257 46.3
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.8e-48 197.2 315 41.9
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 3.0e-48 196.4 299 43.8
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 6.7e-48 195.3 253 46.2
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 8.8e-48 194.9 253 45.8
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 1.5e-47 194.1 249 47.0
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.0e-47 193.7 254 46.1
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.3e-46 191.0 286 43.0
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.3e-46 191.0 202 56.4
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 3.7e-46 189.5 225 50.7
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 6.3e-46 188.7 294 42.9
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 6.3e-46 188.7 317 42.6
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 8.2e-46 188.3 204 53.4
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.8e-45 187.2 247 45.3
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.8e-45 187.2 253 44.7
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 4.1e-45 186.0 288 44.1
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 6.9e-45 185.3 268 44.4
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 9.1e-45 184.9 251 44.2
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 1.3e-43 181.0 242 46.7
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 1.9e-42 177.2 254 44.1
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 1.9e-42 177.2 289 41.2
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 3.2e-42 176.4 175 57.1
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 7.2e-42 175.3 165 57.6
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 2.2e-38 163.7 268 41.4
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 4.1e-37 159.5 277 39.4
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 1.2e-36 157.9 288 37.5
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 1.6e-36 157.5 163 55.8
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 1.6e-36 157.5 254 41.7
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 1.6e-36 157.5 249 39.4
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 2.0e-36 157.1 326 36.2
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 7.7e-36 155.2 137 60.6
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.7e-35 154.1 290 39.3
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 8.5e-35 151.8 217 45.2
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 6.3e-30 135.6 251 35.9
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 6.3e-30 135.6 256 37.5
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 1.8e-29 134.0 252 35.7
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 5.3e-29 132.5 181 42.0
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.1e-26 124.8 152 50.7
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 2.5e-26 123.6 136 54.4
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.6e-25 120.9 69 84.1
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 4.7e-25 119.4 96 64.6
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.3e-24 117.1 157 47.8
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 8.3e-22 108.6 170 44.1
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 4.1e-13 79.7 154 34.4
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 1.5e-10 71.2 143 36.4
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.6e-09 67.8 89 47.2
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.4e-08 64.7 40 87.5
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 5.2e-08 62.8 96 42.7


User provided reference genes

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