Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 2.5e-139 498.8 256 100.0
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.6e-80 302.8 303 62.4
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 5.8e-80 301.6 304 62.2
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 9.5e-75 284.3 237 68.4
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 3.6e-74 282.3 292 59.6
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 3.1e-73 279.3 270 61.9
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 4.0e-73 278.9 255 63.5
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 4.0e-73 278.9 237 67.5
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 4.0e-73 278.9 237 67.5
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.2e-72 277.3 222 69.8
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 3.4e-72 275.8 255 63.1
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 2.4e-70 269.6 312 56.4
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 2.7e-69 266.2 216 69.9
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 2.3e-68 263.1 237 64.1
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.1e-65 254.2 290 58.6
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 4.1e-62 242.3 286 50.3
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 1.3e-60 237.3 267 54.7
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 3.9e-60 235.7 259 60.6
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.2e-56 224.2 269 56.1
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 3.1e-49 199.5 237 49.8
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 3.1e-49 199.5 269 44.6
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 5.3e-49 198.7 221 49.3
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 9.0e-49 198.0 244 45.9
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 9.0e-49 198.0 251 46.6
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 4.4e-48 195.7 251 45.8
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 9.9e-48 194.5 218 46.3
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.3e-47 194.1 235 48.5
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.7e-47 193.7 257 45.5
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 2.2e-47 193.4 218 46.3
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 3.8e-47 192.6 243 45.3
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 4.9e-47 192.2 237 45.6
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 6.4e-47 191.8 277 42.2
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 6.4e-47 191.8 225 48.4
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 6.4e-47 191.8 237 47.3
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 8.4e-47 191.4 228 47.8
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.1e-46 191.0 237 46.8
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 1.4e-46 190.7 219 50.2
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 7.1e-46 188.3 266 44.4
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 9.3e-46 188.0 237 46.8
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.6e-45 187.2 237 46.4
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 4.6e-45 185.7 218 44.5
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 6.0e-45 185.3 244 45.5
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 1.0e-44 184.5 237 43.9
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 1.0e-44 184.5 262 43.9
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.3e-44 184.1 252 43.7
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.7e-44 183.7 268 42.5
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.7e-44 183.7 222 46.4
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.7e-44 183.7 261 44.4
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 2.3e-44 183.3 235 46.0
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 2.3e-44 183.3 261 42.5
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 3.0e-44 183.0 221 49.8
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 3.9e-44 182.6 221 47.1
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 3.9e-44 182.6 247 44.9
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 5.1e-44 182.2 237 45.6
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 6.6e-44 181.8 236 45.8
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 8.7e-44 181.4 237 44.7
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 1.1e-43 181.0 262 44.7
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.9e-43 180.3 181 57.5
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 4.3e-43 179.1 223 47.5
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.3e-43 179.1 237 43.9
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.3e-43 179.1 237 43.9
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.3e-43 179.1 237 43.9
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.6e-43 178.7 257 41.2
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 5.6e-43 178.7 237 43.9
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 7.3e-43 178.3 236 45.3
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 9.6e-43 177.9 258 42.6
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.1e-41 174.5 237 43.5
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 1.8e-41 173.7 237 42.6
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 2.4e-41 173.3 237 43.9
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 3.1e-41 172.9 220 44.5
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.9e-41 171.8 198 49.5
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 9.0e-41 171.4 251 41.8
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.2e-40 171.0 238 43.3
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 3.4e-40 169.5 237 40.9
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 3.4e-40 169.5 237 42.6
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 4.5e-40 169.1 266 42.9
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 5.8e-40 168.7 250 43.2
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.7e-39 167.2 237 42.6
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 2.9e-39 166.4 220 45.5
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 4.9e-39 165.6 220 45.5
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 4.9e-39 165.6 204 44.6
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 3.2e-38 162.9 220 45.0
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 5.4e-38 162.2 214 44.4
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 7.1e-38 161.8 218 43.1
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 7.1e-38 161.8 221 42.1
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 9.3e-38 161.4 237 43.0
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 1.6e-37 160.6 220 42.7
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 2.7e-37 159.8 240 40.8
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.8e-36 157.1 212 42.9
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 5.6e-35 152.1 254 39.0
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 9.6e-35 151.4 218 43.6
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 9.6e-35 151.4 244 40.2
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.3e-34 151.0 221 43.4
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.6e-34 150.6 187 47.1
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.1e-34 150.2 223 41.3
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 2.8e-34 149.8 205 41.0
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.8e-33 147.1 215 41.4
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.1e-33 146.4 277 38.3
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 5.3e-33 145.6 278 36.0
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 9.0e-33 144.8 224 38.8
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 2.6e-32 143.3 203 40.9
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.4e-32 142.9 144 56.9
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 3.4e-32 142.9 224 39.3
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 4.5e-32 142.5 220 40.9
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 9.9e-32 141.4 197 49.2
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 9.9e-32 141.4 222 41.0
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.9e-31 139.8 192 45.3
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 1.4e-30 137.5 205 42.0
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 7.1e-30 135.2 218 39.0
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.3e-30 134.8 199 42.7
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.1e-29 133.7 231 38.5
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 4.6e-29 132.5 161 46.6
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 6.0e-29 132.1 273 35.5
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 7.9e-29 131.7 230 35.7
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.3e-27 125.9 185 41.6
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 9.6e-27 124.8 233 36.1
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 1.6e-26 124.0 160 46.2
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 2.8e-26 123.2 229 37.6
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 9.0e-25 118.2 205 39.5
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.5e-24 117.5 178 42.1
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.5e-24 117.5 178 42.1
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.7e-23 114.0 101 56.4
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 3.8e-23 112.8 183 38.3
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.9e-22 110.5 100 55.0
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.5e-22 109.0 187 39.6
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.2e-21 107.8 174 42.5
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 5.1e-20 102.4 129 48.8
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 3.7e-18 96.3 90 55.6
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.8e-17 94.0 122 44.3
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.3e-15 87.8 154 38.3
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 1.3e-15 87.8 71 59.2
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.9e-14 84.0 221 31.7
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.6e-13 80.9 245 29.0
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.4e-12 77.8 52 67.3
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 1.8e-12 77.4 157 33.8
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 3.9e-12 76.3 101 45.5
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 8.2e-10 68.6 145 32.4
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 2.4e-09 67.0 115 37.4
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 4.2e-06 56.2 152 29.6


User provided reference genes

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