Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 3.3e-228 794.7 394 100.0
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 3.2e-215 751.5 396 94.7
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 3.2e-215 751.5 396 94.9
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 6.3e-211 737.3 395 92.2
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 7.0e-210 733.8 394 92.4
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 6.1e-206 720.7 396 91.7
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 6.1e-206 720.7 396 91.7
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 2.0e-204 715.7 395 90.9
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 2.9e-192 675.2 394 84.5
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 4.3e-191 671.4 395 84.8
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 6.8e-189 664.1 386 86.0
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 6.0e-169 597.8 399 74.9
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 6.7e-144 514.6 409 63.3
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 1.3e-142 510.4 390 64.1
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 2.1e-142 509.6 392 63.5
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 2.8e-142 509.2 408 61.3
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 4.8e-142 508.4 399 65.4
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.1e-141 507.3 409 62.3
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.4e-141 506.1 408 60.5
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 4.0e-141 505.4 395 62.3
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 4.5e-140 501.9 392 65.1
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 7.6e-140 501.1 389 65.3
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 4.9e-139 498.4 386 64.2
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 6.4e-139 498.0 391 64.2
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 8.4e-139 497.7 392 63.5
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.4e-138 496.1 392 64.3
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.2e-138 495.7 392 63.3
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 7.1e-138 494.6 392 64.3
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 1.2e-137 493.8 391 62.9
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 2.1e-137 493.0 390 62.8
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 2.7e-137 492.7 375 65.3
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 2.7e-137 492.7 391 63.2
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 3.5e-137 492.3 386 62.2
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 4.6e-137 491.9 357 68.9
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.9e-137 491.1 392 63.5
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.9e-137 491.1 392 63.8
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 1.0e-136 490.7 384 63.8
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 2.3e-136 489.6 390 62.8
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 6.7e-136 488.0 391 63.2
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.5e-135 486.9 392 63.3
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.9e-135 486.5 393 62.1
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 4.3e-135 485.3 392 62.2
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 7.4e-135 484.6 389 61.2
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 7.4e-135 484.6 384 63.3
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.3e-134 483.8 414 60.4
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 1.3e-134 483.8 384 62.2
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 1.3e-134 483.8 390 62.1
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 2.1e-134 483.0 391 61.9
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 2.8e-134 482.6 406 60.3
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 2.8e-134 482.6 389 62.0
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 3.7e-134 482.3 389 61.7
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 6.2e-134 481.5 392 61.7
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 8.2e-134 481.1 392 61.7
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 8.2e-134 481.1 384 62.5
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 3.1e-133 479.2 392 61.5
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 3.1e-133 479.2 344 67.7
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 4.0e-133 478.8 399 61.9
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 5.3e-133 478.4 389 59.6
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 5.3e-133 478.4 392 61.5
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 9.0e-133 477.6 390 61.5
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 9.0e-133 477.6 384 61.7
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 1.5e-132 476.9 390 62.1
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 1.5e-132 476.9 388 61.3
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 2.0e-132 476.5 388 60.8
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 3.4e-132 475.7 386 61.9
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 3.4e-132 475.7 388 62.4
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 3.4e-132 475.7 387 62.5
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 5.8e-132 474.9 389 61.4
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 7.6e-132 474.6 389 61.2
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 1.0e-131 474.2 380 62.6
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.3e-131 473.8 409 59.4
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 1.7e-131 473.4 387 59.4
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 4.9e-131 471.9 389 60.4
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 1.2e-129 467.2 367 62.9
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 2.1e-129 466.5 392 60.7
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 2.1e-129 466.5 380 61.6
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 2.1e-129 466.5 347 67.4
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 6.0e-129 464.9 391 59.6
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 1.8e-128 463.4 389 60.2
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.8e-128 463.4 391 59.6
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 8.2e-126 454.5 359 63.8
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 2.0e-124 449.9 388 58.2
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 2.5e-122 443.0 352 63.1
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 2.1e-121 439.9 395 60.5
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 6.7e-120 434.9 376 58.0
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 6.7e-120 434.9 389 58.4
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 2.5e-119 433.0 352 60.8
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 4.3e-119 432.2 391 58.1
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 3.7e-118 429.1 409 54.3
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 8.2e-118 427.9 332 64.8
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 4.1e-117 425.6 391 58.1
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 2.2e-115 419.9 420 51.9
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 8.5e-115 417.9 395 55.7
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 1.0e-112 411.0 344 61.0
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 6.9e-109 398.3 337 60.5
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.9e-106 390.2 263 70.7
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 1.2e-105 387.5 200 92.5
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 1.2e-105 387.5 302 64.2
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 2.3e-104 383.3 349 56.4
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 7.0e-101 371.7 195 87.7
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 5.9e-100 368.6 251 68.5
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.9e-98 363.6 306 60.8
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 2.7e-92 343.2 385 48.1
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 4.0e-88 329.3 280 58.2
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 7.7e-84 315.1 248 62.5
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.6e-76 290.8 163 81.0
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 5.0e-75 285.8 195 76.4
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 4.3e-74 282.7 327 46.5
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 4.7e-73 279.3 280 48.6
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 4.0e-64 249.6 226 60.2
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 4.4e-63 246.1 187 62.6
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 3.2e-61 240.0 176 65.3
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.1e-57 227.3 130 77.7
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 5.8e-55 219.2 215 48.4
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 1.3e-51 208.0 194 57.2
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 5.6e-50 202.6 371 35.3
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 1.7e-46 191.0 113 73.5
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 4.4e-39 166.4 131 59.5
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 3.8e-38 163.3 132 58.3
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 4.9e-38 162.9 132 58.3
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 3.9e-35 153.3 135 59.3
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.4e-32 144.8 211 40.3
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 4.2e-29 133.3 84 72.6
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 3.5e-28 130.2 151 45.7
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 4.6e-28 129.8 223 34.5
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 1.3e-27 128.3 197 37.1
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 4.8e-25 119.8 72 75.0
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 4.0e-24 116.7 74 70.3
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 3.4e-23 113.6 147 46.3
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 9.3e-21 105.5 98 53.1
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 1.6e-17 94.7 72 65.3
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 2.0e-15 87.8 98 50.0
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 1.1e-13 82.0 45 77.8
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 4.6e-12 76.6 97 48.5
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 1.3e-11 75.1 45 68.9
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 6.9e-08 62.8 59 52.5
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 4.5e-07 60.1 105 33.3
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 5.9e-07 59.7 35 65.7


User provided reference genes

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