Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 4.8e-258 894.0 464 100.0
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 2.2e-247 858.6 464 94.8
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 4.2e-246 854.4 465 95.5
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 2.7e-245 851.7 464 94.6
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 2.7e-245 851.7 464 94.6
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 2.5e-243 845.1 465 94.8
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 2.5e-238 828.6 464 91.4
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.1e-229 798.9 463 88.8
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 3.5e-229 798.1 463 89.0
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 2.8e-226 788.5 463 88.3
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 4.7e-213 744.6 432 90.7
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 7.9e-213 743.8 461 83.3
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 6.3e-210 734.2 431 87.9
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.5e-166 590.1 397 75.6
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 7.8e-152 541.2 472 61.0
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 2.4e-148 529.6 463 60.0
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 5.8e-147 525.0 463 59.6
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.7e-146 523.5 462 58.4
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 3.8e-146 522.3 462 59.7
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 3.2e-145 519.2 470 57.2
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 5.4e-145 518.5 469 59.3
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.3e-143 513.8 464 56.9
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.3e-143 513.1 464 57.8
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 8.7e-143 511.1 472 58.1
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.9e-142 510.0 461 59.7
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 1.9e-142 510.0 475 57.3
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 3.3e-142 509.2 467 57.4
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 3.3e-142 509.2 463 58.5
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 4.3e-142 508.8 462 58.4
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 9.6e-142 507.7 468 57.7
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 1.6e-141 506.9 476 56.9
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.1e-140 504.2 470 57.7
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 1.1e-140 504.2 467 57.2
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 1.8e-140 503.4 465 55.9
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 2.4e-140 503.1 465 56.1
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.3e-140 501.9 470 55.5
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 2.6e-139 499.6 464 56.7
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.8e-139 498.4 468 55.3
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 9.9e-139 497.7 470 55.1
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 9.9e-139 497.7 468 55.8
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.3e-138 497.3 470 54.9
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 9.3e-137 491.1 469 55.7
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 2.1e-136 490.0 467 53.5
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 2.7e-136 489.6 465 54.2
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.0e-135 487.6 453 58.1
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 3.0e-135 486.1 470 54.9
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 3.9e-135 485.7 465 53.8
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.9e-134 483.4 470 54.7
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 9.6e-134 481.1 462 53.5
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 9.6e-134 481.1 460 55.4
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.6e-133 480.3 466 52.6
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 6.2e-133 478.4 469 55.4
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 5.3e-132 475.3 469 55.0
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.3e-132 475.3 474 52.5
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 5.3e-132 475.3 461 54.7
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 1.1e-129 467.6 462 55.4
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.4e-129 466.5 453 55.6
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 3.2e-129 466.1 466 52.8
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 9.3e-129 464.5 427 58.3
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 5.1e-127 458.8 426 57.5
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 4.8e-125 452.2 463 54.2
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.4e-124 450.7 471 54.1
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 6.9e-124 448.4 472 52.8
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 9.0e-124 448.0 435 56.1
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 2.9e-122 443.0 466 48.9
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.4e-121 440.7 468 53.4
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 4.2e-121 439.1 468 48.9
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 2.1e-120 436.8 468 48.9
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 3.5e-120 436.0 464 50.9
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 2.5e-118 429.9 391 59.6
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 5.7e-118 428.7 369 58.8
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 7.4e-118 428.3 465 50.5
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.1e-116 424.5 550 44.2
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 3.1e-116 422.9 503 49.1
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 7.6e-115 418.3 385 56.1
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 3.8e-114 416.0 376 58.2
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.6e-112 409.1 463 46.7
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.3e-110 402.5 463 49.5
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 1.3e-109 401.0 392 51.3
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 2.2e-109 400.2 387 56.3
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.4e-108 397.5 470 47.2
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 2.6e-107 393.3 479 44.5
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 2.5e-105 386.7 525 45.5
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.2e-105 386.3 426 48.1
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 3.0e-103 379.8 482 46.3
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.7e-101 374.0 370 53.8
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 2.0e-99 367.1 506 45.3
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 4.5e-99 365.9 491 43.6
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 2.2e-98 363.6 410 47.3
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 6.5e-98 362.1 421 49.4
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.1e-97 361.3 466 45.3
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 7.2e-97 358.6 441 46.5
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 6.7e-95 352.1 290 60.3
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 3.7e-93 346.3 322 54.7
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 2.4e-92 343.6 355 52.7
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 2.6e-91 340.1 413 45.8
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 3.8e-90 336.3 350 51.1
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 4.7e-88 329.3 294 56.5
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-86 324.7 320 55.6
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 2.8e-85 320.1 374 49.2
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 3.7e-85 319.7 339 50.4
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 9.1e-84 315.1 353 48.2
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 9.1e-84 315.1 291 52.2
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 3.2e-81 306.6 446 42.2
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.1e-80 303.9 169 88.2
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 6.1e-80 302.4 276 54.7
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.9e-74 283.5 261 52.9
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.5e-70 271.2 254 52.4
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 5.7e-70 269.2 315 50.2
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 1.3e-69 268.1 515 35.3
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 4.1e-68 263.1 379 43.3
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.5e-65 253.8 309 48.9
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 3.6e-64 250.0 223 56.5
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 2.0e-62 244.2 264 49.6
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 4.3e-57 226.5 311 41.5
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.6e-43 181.4 208 52.4
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.0e-42 178.7 557 28.7
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 8.6e-42 175.6 174 54.6
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 6.2e-40 169.5 457 30.4
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 5.6e-33 146.4 159 45.9
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 7.3e-33 146.0 557 28.9
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 6.9e-31 139.4 394 31.2
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 8.9e-31 139.0 106 60.4
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.0e-30 137.9 149 49.0
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.4e-28 131.7 169 46.7
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.9e-21 107.5 149 42.3
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 7.1e-20 102.8 133 47.4
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 9.3e-20 102.4 63 81.0
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 1.3e-18 98.6 143 45.5
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 3.9e-18 97.1 98 53.1
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 3.3e-17 94.0 83 56.6
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.0e-15 87.0 75 56.0
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.0e-15 87.0 75 56.0
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 9.0e-15 85.9 75 54.7
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.5e-14 85.1 126 36.5
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 4.5e-14 83.6 54 74.1
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.6e-14 82.8 75 54.7
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 8.4e-13 79.3 85 47.1
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 3.5e-11 73.9 52 65.4
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.1e-09 68.9 78 48.7
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.5e-09 68.6 81 49.4
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 5.6e-09 66.6 125 32.0
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 5.3e-07 60.1 46 58.7
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 1.0e-05 55.8 32 78.1


User provided reference genes

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