Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 8.3e-45 183.3 93 100.0
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-42 176.0 93 96.8
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 3.9e-42 174.5 93 95.7
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 3.9e-42 174.5 93 95.7
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 5.6e-41 170.6 93 95.7
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 6.4e-37 157.1 93 87.1
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 6.4e-37 157.1 93 87.1
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-36 156.0 93 87.1
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.4e-36 156.0 93 87.1
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.4e-36 156.0 93 87.1
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 2.4e-36 155.2 93 87.1
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 5.4e-36 154.1 93 83.9
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 5.4e-36 154.1 93 83.9
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-35 152.5 93 82.8
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.6e-35 152.5 93 82.8
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.6e-35 152.5 93 82.8
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 2.0e-35 152.1 88 89.8
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.5e-35 151.4 93 84.9
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 3.5e-35 151.4 93 84.9
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 4.6e-35 151.0 93 84.9
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 7.8e-35 150.2 93 83.9
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 4.3e-33 144.4 91 83.5
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 4.3e-33 144.4 94 81.9
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-32 142.5 93 81.7
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 4.0e-23 111.3 101 64.4
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 6.6e-18 94.0 97 59.8
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 3.3e-17 91.7 96 59.4
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 7.3e-17 90.5 97 57.7
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 7.3e-17 90.5 89 56.2
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 9.6e-17 90.1 96 59.4
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-16 89.7 89 60.7
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.6e-16 89.4 97 57.7
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 6.2e-16 87.4 96 55.2
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 6.2e-16 87.4 96 54.2
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 8.1e-16 87.0 98 58.2
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 4.0e-15 84.7 91 58.2
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-14 83.2 96 52.1
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 2.2e-13 79.0 89 52.8
BolC6t37870H Brassica oleracea HOM05D003683 ORTHO05D004143 3.8e-13 78.2 98 51.0
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 6.4e-13 77.4 102 52.0
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.4e-12 76.3 103 45.6
THA.LOC104801993 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 4.2e-12 74.7 96 50.0
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 5.4e-12 74.3 96 49.0
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.4e-12 74.3 96 49.0
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.4e-12 74.3 96 49.0
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 5.4e-12 74.3 96 51.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.6e-11 72.8 101 47.5
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.7e-11 72.0 96 47.9
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 3.5e-11 71.6 75 56.0
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.5e-11 71.6 95 48.4
BcaC08g45089 Brassica carinata HOM05D003683 ORTHO05D004143 1.0e-10 70.1 98 48.0
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.7e-10 69.3 95 47.4
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.7e-10 69.3 74 54.1
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 3.0e-10 68.6 47 76.6
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 3.0e-10 68.6 47 76.6
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.0e-10 68.6 96 47.9
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 3.0e-10 68.6 87 48.3
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.9e-10 68.2 94 51.1
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.6e-10 67.4 79 50.6
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.6e-10 67.4 91 49.5
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 6.6e-10 67.4 90 44.4
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 8.7e-10 67.0 90 44.4
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 1.1e-09 66.6 64 53.1
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.9e-09 65.9 91 46.2
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 1.9e-09 65.9 94 48.9
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 1.9e-09 65.9 76 50.0
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.9e-09 65.9 102 43.1
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.9e-09 65.9 73 53.4
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 2.5e-09 65.5 96 43.8
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.5e-09 65.5 73 52.1
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.3e-09 65.1 64 56.2
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.3e-09 64.7 61 60.7
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 4.3e-09 64.7 81 53.1
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.6e-09 64.3 73 52.1
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 7.3e-09 63.9 103 41.7
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 7.3e-09 63.9 56 60.7
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 7.3e-09 63.9 102 45.1
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 7.3e-09 63.9 97 44.3
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 9.6e-09 63.5 64 57.8
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 9.6e-09 63.5 63 57.1
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 9.6e-09 63.5 61 62.3
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.3e-08 63.2 76 48.7
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 1.3e-08 63.2 81 45.7
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.6e-08 62.8 91 45.1
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.6e-08 62.8 100 45.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.6e-08 62.8 47 68.1
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.6e-08 62.8 68 52.9
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.1e-08 62.4 61 52.5
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 2.1e-08 62.4 90 50.0
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 2.1e-08 62.4 107 38.3
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.1e-08 62.4 68 54.4
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.1e-08 62.4 95 43.2
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 3.6e-08 61.6 97 41.2
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 3.6e-08 61.6 69 58.0
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 4.8e-08 61.2 93 44.1
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 4.8e-08 61.2 59 52.5
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 4.8e-08 61.2 88 43.2
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 4.8e-08 61.2 68 52.9
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.2e-08 60.8 79 45.6
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 6.2e-08 60.8 97 46.4
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 6.2e-08 60.8 94 42.6
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 6.2e-08 60.8 109 37.6
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 8.1e-08 60.5 47 68.1
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.1e-07 60.1 88 44.3
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.1e-07 60.1 92 44.6
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-07 60.1 62 58.1
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 1.1e-07 60.1 44 72.7
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 1.1e-07 60.1 104 41.3
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.4e-07 59.7 63 55.6
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.4e-07 59.7 92 47.8
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.8e-07 59.3 72 47.2
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 2.4e-07 58.9 68 48.5
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.4e-07 58.9 75 48.0
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.4e-07 58.9 64 54.7
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 2.4e-07 58.9 96 40.6
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 3.1e-07 58.5 65 53.8
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 3.1e-07 58.5 96 42.7
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 3.1e-07 58.5 47 61.7
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.1e-07 58.5 62 56.5
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.1e-07 58.5 62 56.5
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.1e-07 58.5 88 43.2
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 3.1e-07 58.5 81 53.1
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 4.0e-07 58.2 95 42.1
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.0e-07 58.2 96 41.7
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 4.0e-07 58.2 82 46.3
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 4.0e-07 58.2 63 52.4
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 4.0e-07 58.2 74 51.4
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 4.0e-07 58.2 93 41.9
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 4.0e-07 58.2 69 52.2
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 5.3e-07 57.8 57 52.6
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 5.3e-07 57.8 94 41.5
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 6.9e-07 57.4 92 44.6
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 9.0e-07 57.0 88 44.3
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 9.0e-07 57.0 95 41.1
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 9.0e-07 57.0 76 46.1
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 9.0e-07 57.0 53 56.6
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 1.2e-06 56.6 63 52.4
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.2e-06 56.6 91 41.8
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.5e-06 56.2 60 51.7
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.5e-06 56.2 66 50.0
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 1.5e-06 56.2 78 46.2
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 2.0e-06 55.8 62 50.0
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 2.6e-06 55.5 61 50.8
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 3.4e-06 55.1 107 39.3
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 4.4e-06 54.7 87 48.3
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.4e-06 54.7 55 52.7
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 5.8e-06 54.3 91 44.0
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 5.8e-06 54.3 97 39.2
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 7.6e-06 53.9 61 47.5
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 7.6e-06 53.9 56 55.4
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 7.6e-06 53.9 66 48.5
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.9e-06 53.5 97 39.2
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 9.9e-06 53.5 63 49.2
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 9.9e-06 53.5 63 47.6
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 9.9e-06 53.5 99 41.4


User provided reference genes

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