Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.1e-136 490.0 238 100.0
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 1.2e-127 459.9 240 94.6
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 2.6e-127 458.8 239 93.3
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 4.5e-127 458.0 240 94.2
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.2e-126 455.7 230 97.0
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 6.4e-126 454.1 240 93.3
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 6.4e-126 454.1 238 92.4
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 1.4e-125 453.0 240 92.9
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 3.2e-125 451.8 240 92.9
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 2.1e-124 449.1 229 95.6
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.7e-124 448.7 229 95.2
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 4.6e-124 448.0 229 95.2
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.8e-123 446.0 229 94.8
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 5.1e-123 444.5 238 92.4
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 6.2e-121 437.6 229 93.0
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 2.4e-120 435.6 228 93.0
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.5e-117 425.6 229 90.4
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.2e-100 370.2 212 86.3
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 5.7e-98 361.3 230 75.2
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 7.7e-95 350.9 218 73.4
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.0e-94 350.5 234 72.2
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 2.2e-94 349.4 234 70.5
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 2.9e-94 349.0 230 72.2
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 2.9e-94 349.0 230 72.2
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 6.5e-94 347.8 221 72.4
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.9e-93 346.3 230 70.9
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.9e-93 346.3 230 70.9
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 2.5e-93 345.9 234 68.8
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 2.5e-93 345.9 234 73.1
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.2e-93 345.5 234 72.6
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 3.6e-92 342.0 230 71.7
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 3.6e-92 342.0 230 71.7
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.6e-92 342.0 218 72.5
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 3.6e-92 342.0 230 70.9
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 4.7e-92 341.7 229 69.9
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 4.7e-92 341.7 220 73.2
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 4.7e-92 341.7 218 74.3
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 6.1e-92 341.3 235 68.9
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.0e-91 340.5 230 72.6
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 1.4e-91 340.1 220 74.1
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.4e-91 340.1 230 71.7
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 1.4e-91 340.1 230 70.0
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.4e-91 340.1 220 70.9
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.8e-91 339.7 218 71.6
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.3e-91 339.3 230 72.2
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.3e-91 339.3 238 68.1
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 3.0e-91 339.0 234 69.2
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 6.7e-91 337.8 238 69.3
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.1e-90 337.0 225 71.1
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.1e-90 337.0 230 71.7
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 2.0e-90 336.3 236 69.9
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 3.3e-90 335.5 229 70.7
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 5.7e-90 334.7 234 67.9
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.7e-89 333.2 225 71.1
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.7e-89 333.2 223 70.0
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 2.2e-89 332.8 219 71.2
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 3.7e-89 332.0 241 68.5
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 3.7e-89 332.0 241 68.9
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 4.8e-89 331.6 234 68.4
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 4.8e-89 331.6 239 69.0
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 4.8e-89 331.6 234 69.7
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 6.3e-89 331.3 241 68.9
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 6.3e-89 331.3 235 66.8
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 8.2e-89 330.9 240 65.8
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 8.2e-89 330.9 218 72.0
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.1e-88 330.5 230 70.0
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.4e-88 330.1 230 69.1
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 1.8e-88 329.7 238 64.7
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.8e-88 329.7 218 68.3
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.4e-88 329.3 234 67.5
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.4e-88 329.3 235 65.5
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 3.1e-88 328.9 238 67.2
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 5.3e-88 328.2 238 64.3
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 9.1e-88 327.4 230 67.4
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 2.6e-87 325.9 214 72.4
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.3e-86 323.6 218 69.7
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 5.0e-86 321.6 236 68.2
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 5.0e-86 321.6 243 63.8
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.1e-85 320.5 240 64.6
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.5e-85 320.1 240 65.0
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 1.5e-85 320.1 230 68.7
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 1.5e-85 320.1 222 67.6
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.5e-85 320.1 242 64.9
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 4.2e-85 318.5 218 71.1
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 2.7e-84 315.8 219 67.1
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.6e-84 315.5 218 68.8
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 6.1e-84 314.7 218 67.4
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 6.1e-84 314.7 230 66.1
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 8.0e-84 314.3 222 67.6
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 8.0e-84 314.3 218 68.8
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 8.0e-84 314.3 216 69.0
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 2.3e-83 312.8 218 68.8
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 4.0e-83 312.0 216 66.7
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.2e-83 311.6 218 66.5
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 6.7e-83 311.2 231 68.8
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 6.7e-83 311.2 231 68.8
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.2e-82 310.5 228 66.7
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.2e-82 310.5 218 67.9
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 2.0e-82 309.7 229 65.9
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 3.3e-82 308.9 230 66.5
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 8.2e-81 304.3 226 64.2
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.4e-80 303.5 223 64.6
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.4e-80 303.5 245 61.2
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 5.3e-80 301.6 240 62.5
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 5.3e-80 301.6 240 62.5
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 7.0e-80 301.2 230 66.5
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 9.1e-80 300.8 229 64.2
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 2.0e-79 299.7 236 62.3
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.7e-79 299.3 213 65.7
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 3.5e-79 298.9 244 61.1
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 5.9e-79 298.1 226 66.4
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 5.9e-79 298.1 223 63.2
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.3e-78 297.0 213 65.7
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 8.5e-78 294.3 214 66.8
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.1e-77 293.9 223 64.6
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.1e-77 293.9 234 62.8
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.5e-77 293.5 223 63.2
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 3.6e-76 288.9 259 56.0
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.4e-75 287.0 228 59.6
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 1.4e-75 287.0 218 62.8
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 7.5e-74 281.2 238 58.4
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.3e-73 280.4 222 62.6
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 7.7e-71 271.2 230 61.7
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.3e-70 269.6 190 75.3
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 8.6e-70 267.7 170 71.8
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.5e-69 266.2 177 72.3
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.3e-69 265.8 181 69.1
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 2.3e-67 259.6 229 57.2
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 2.6e-66 256.1 229 58.1
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 5.4e-64 248.4 246 50.0
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 7.8e-63 244.6 229 55.0
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.3e-61 238.8 163 69.3
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 3.1e-59 232.6 159 68.6
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 5.8e-58 228.4 160 64.4
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.4e-56 223.8 176 63.1
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 3.9e-54 215.7 215 48.8
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.5e-53 213.8 177 59.9
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 6.2e-52 208.4 188 60.1
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 1.1e-51 207.6 215 48.8
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 2.0e-50 203.4 152 69.7
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 3.5e-47 192.6 202 48.0
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.7e-46 190.3 202 47.5
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 1.1e-43 181.0 130 70.0
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.8e-43 180.3 120 65.8
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 4.9e-41 172.2 133 58.6
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 2.6e-34 149.8 237 38.4
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 3.4e-34 149.4 90 74.4
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 3.0e-30 136.3 99 59.6
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 3.0e-30 136.3 90 76.7
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 4.3e-29 132.5 103 66.0
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.6e-28 129.4 222 37.4
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.5e-26 124.0 158 43.7
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.2e-23 114.4 70 84.3
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 4.6e-23 112.5 92 59.8
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.7e-22 110.5 102 56.9
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 8.1e-20 101.7 202 29.2
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.0e-18 97.1 67 67.2
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-16 90.5 60 76.7
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 4.2e-16 89.4 62 74.2
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.4e-16 89.0 67 68.7
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.1e-15 87.0 67 67.2
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.5e-15 86.3 115 40.0
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 4.3e-13 79.3 54 66.7
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 3.4e-10 69.7 152 30.9
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.9e-09 66.6 49 67.3
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 4.2e-08 62.8 37 81.1
BraA05t19164Z Brassica rapa HOM05D004213 ORTHO05D107977 8.7e-06 55.1 27 85.2


User provided reference genes

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