Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03221 Brassica carinata HOM05D003545 ORTHO05D031779 1.7e-34 148.7 70 100.0
C03p30540 Brassica napus HOM05D003545 ORTHO05D031779 6.5e-34 146.7 68 100.0
A02p20960 Brassica napus HOM05D003545 ORTHO05D031779 2.2e-26 121.7 85 71.8
BcaC03g16226 Brassica carinata HOM05D003545 ORTHO05D011382 3.0e-23 111.3 68 82.4
BolC2t10031H Brassica oleracea HOM05D003545 ORTHO05D011382 3.0e-23 111.3 68 82.4
BcaB02g07435 Brassica carinata HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
BcaB02g08203 Brassica carinata HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
BcaC07g40404 Brassica carinata HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
BcaC08g45018 Brassica carinata HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
A04p01940 Brassica napus HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
A07p24930 Brassica napus HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
A09p52330 Brassica napus HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
C06p26500 Brassica napus HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
C08p34990 Brassica napus HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
BolC6t37813H Brassica oleracea HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
BolC8t51103H Brassica oleracea HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
BraA04t15918Z Brassica rapa HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
BraA07t30135Z Brassica rapa HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
BraA09t40662Z Brassica rapa HOM05D003545 ORTHO05D004720 1.5e-22 109.0 68 80.9
C02p40050 Brassica napus HOM05D003545 ORTHO05D011382 7.4e-22 106.7 68 79.4
Aa31LG10G14210 Aethionema arabicum HOM05D003545 ORTHO05D004720 1.7e-21 105.5 68 77.9
AL5G42170 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 1.7e-21 105.5 68 77.9
AT3G59990 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 1.7e-21 105.5 68 77.9
Carub.0005s2672 Capsella rubella HOM05D003545 ORTHO05D004720 1.7e-21 105.5 68 77.9
CARHR170310 Cardamine hirsuta HOM05D003545 ORTHO05D004720 1.7e-21 105.5 68 77.9
Thhalv10005983m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 1.7e-21 105.5 68 77.9
Sp5g03190 Schrenkiella parvula HOM05D003545 ORTHO05D004720 1.7e-21 105.5 68 77.9
THA.LOC104804455 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 1.7e-21 105.5 68 77.9
C01p23170 Brassica napus HOM05D001404 ORTHO05D004720 2.2e-21 105.1 68 77.9
Ciclev10020270m.g Citrus clementina HOM05D003545 ORTHO05D004720 2.8e-21 104.8 68 76.5
Migut.N01930 Erythranthe guttata HOM05D003545 ORTHO05D004720 2.8e-21 104.8 68 76.5
Manes.01G007800 Manihot esculenta HOM05D003545 ORTHO05D004720 2.8e-21 104.8 68 76.5
QL02p099802 Quercus lobata HOM05D003545 ORTHO05D004720 2.8e-21 104.8 68 76.5
QL02p099813 Quercus lobata HOM05D003545 ORTHO05D004720 2.8e-21 104.8 68 76.5
Sabra04G0056000 Salix brachista HOM05D003545 ORTHO05D004720 2.8e-21 104.8 68 76.5
THA.LOC104802530 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 2.8e-21 104.8 68 76.5
GSVIVG01027489001 Vitis vinifera HOM05D003545 ORTHO05D004720 2.8e-21 104.8 68 76.5
MSTRG.24538 Avicennia marina HOM05D003545 ORTHO05D004720 3.7e-21 104.4 68 75.0
BcaC01g05183 Brassica carinata HOM05D003545 ORTHO05D004720 3.7e-21 104.4 68 76.5
A03p24710 Brassica napus HOM05D003545 ORTHO05D004720 3.7e-21 104.4 68 76.5
C03p29450 Brassica napus HOM05D003545 ORTHO05D004720 3.7e-21 104.4 68 76.5
CiPaw.05G050600 Carya illinoinensis HOM05D003545 ORTHO05D004720 3.7e-21 104.4 68 76.5
COL.COLO4_20004 Corchorus olitorius HOM05D003545 ORTHO05D004720 3.7e-21 104.4 68 76.5
Dinv14603 Davidia involucrata HOM05D003545 ORTHO05D004720 3.7e-21 104.4 68 75.0
Thhalv10001459m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 3.7e-21 104.4 68 76.5
Sp4g26260 Schrenkiella parvula HOM05D003545 ORTHO05D004720 3.7e-21 104.4 68 76.5
BraA03t11677Z Brassica rapa HOM05D003545 ORTHO05D004720 4.8e-21 104.0 68 75.0
CANSAT64G0507 Cannabis sativa HOM05D003545 ORTHO05D004720 4.8e-21 104.0 68 75.0
PGR042G1967 Punica granatum HOM05D003545 ORTHO05D004720 4.8e-21 104.0 68 75.0
Atru.chr11.677 Acer truncatum HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
AL4G43110 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
AT2G44180 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
BcaC04g21066 Brassica carinata HOM05D000458 ORTHO05D000951 6.3e-21 103.6 69 76.8
CDE07G0638 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
ClCG05G010600 Citrullus lanatus HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
Haze_01811 Corylus avellana HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
CsaV3_3G017890 Cucumis sativus L. HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
Duzib138G0328 Durio zibethinus HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
Gohir.A11G154800 Gossypium hirsutum HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
Gohir.D11G161700 Gossypium hirsutum HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
Gorai.007G172000 Gossypium raimondii HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
Potri.017G133200 Populus trichocarpa HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
Sed0004430 Sechium edule HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
Sed0011009 Sechium edule HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
Hund22664 Selenicereus undatus HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
SGA_v2.0_scaffold286G47136 Striga asiatica HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
SGA_v2.0_scaffold334G49082 Striga asiatica HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
Thecc.01G176200 Theobroma cacao HOM05D003545 ORTHO05D004720 6.3e-21 103.6 68 75.0
Cpa.g.sc9.232 Carica papaya HOM05D003545 ORTHO05D004720 8.2e-21 103.2 68 73.5
Eucgr.E00006 Eucalyptus grandis HOM05D003545 ORTHO05D004720 8.2e-21 103.2 68 73.5
Prupe.2G330300 Prunus persica HOM05D003545 ORTHO05D004720 8.2e-21 103.2 68 73.5
Rhsim09G0038700 Rhododendron simsii HOM05D003545 ORTHO05D004720 8.2e-21 103.2 68 73.5
Rhsim09G0038900 Rhododendron simsii HOM05D009719 ORTHO05D003904 8.2e-21 103.2 68 73.5
RcHm_v2.0_Chr1g0328121 Rosa chinensis HOM05D003545 ORTHO05D004720 8.2e-21 103.2 68 73.5
BcaC05g29263 Brassica carinata HOM05D003545 ORTHO05D024095 1.1e-20 102.8 68 76.5
Glyma.05G001900 Glycine max HOM05D003545 ORTHO05D004720 1.1e-20 102.8 68 73.5
Glyma.19G001700 Glycine max HOM05D003545 ORTHO05D004720 1.1e-20 102.8 68 73.5
HanXRQChr12g0379661 Helianthus annuus HOM05D003545 ORTHO05D004720 1.1e-20 102.8 68 75.0
Nn1g09395 Nelumbo nucifera HOM05D003545 ORTHO05D004720 1.1e-20 102.8 68 75.0
QL02p098432 Quercus lobata HOM05D003545 ORTHO05D004720 1.1e-20 102.8 68 75.0
VMungo1080G0943 Vigna mungo HOM05D003545 ORTHO05D004720 1.1e-20 102.8 68 73.5
Aa31LG1G25840 Aethionema arabicum HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 75.0
arahy.Tifrunner.gnm1.ann1.J1JEGY Arachis hypogaea HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 73.5
arahy.Tifrunner.gnm1.ann1.UV5XRQ Arachis hypogaea HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 73.5
BolC3t15293H Brassica oleracea HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 75.0
Carub.0004s2675 Capsella rubella HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 73.5
Cc03_g16230 Coffea canephora HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 75.0
Cc03_g16260 Coffea canephora HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 75.0
Lj6g0020499 Lotus japonicus HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 73.5
Lalb_Chr24g0392661 Lupinus albus HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 73.5
MD17G1285400 Malus domestica HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 73.5
Oeu050295.1 Olea europaea HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 75.0
Psat6g212640 Pisum sativum HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 73.5
Potri.004G084800 Populus trichocarpa HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 75.0
SalBow3G0142 Salvia bowleyana HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 75.0
TPR.G21147 Trifolium pratense HOM05D003545 ORTHO05D004720 1.4e-20 102.4 68 73.5
C09p36080 Brassica napus HOM05D003545 ORTHO05D024095 1.8e-20 102.1 68 76.5
BolC5t31394H Brassica oleracea HOM05D003545 ORTHO05D024095 1.8e-20 102.1 68 76.5
FvH4_5g31110 Fragaria vesca HOM05D003545 ORTHO05D004720 1.8e-20 102.1 68 72.1
FvH4_5g31120 Fragaria vesca HOM05D003545 ORTHO05D004720 1.8e-20 102.1 68 72.1
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.8e-20 102.1 68 72.1
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.8e-20 102.1 68 72.1
Rhsim09G0000700 Rhododendron simsii HOM05D003545 ORTHO05D004720 1.8e-20 102.1 68 72.1
CiPaw.06G144300 Carya illinoinensis HOM05D003545 ORTHO05D004720 2.4e-20 101.7 68 73.5
CDE04G0368 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 2.4e-20 101.7 68 73.5
Lj1A1040G36 Lonicera japonica HOM05D003545 ORTHO05D004720 2.4e-20 101.7 68 73.5
vmacro00738 Vaccinium macrocarpon HOM05D003545 ORTHO05D004720 2.4e-20 101.7 68 73.5
MSTRG.22061 Avicennia marina HOM05D003545 ORTHO05D004720 3.1e-20 101.3 68 73.5
BcaC08g45078 Brassica carinata HOM05D003545 ORTHO05D004720 3.1e-20 101.3 68 75.0
C06p26870 Brassica napus HOM05D003545 ORTHO05D004720 3.1e-20 101.3 68 75.0
BolC6t37861H Brassica oleracea HOM05D003545 ORTHO05D004720 3.1e-20 101.3 68 75.0
MELO3C020334.2 Cucumis melo HOM05D003545 ORTHO05D004720 3.1e-20 101.3 68 73.5
Eucgr.E04344 Eucalyptus grandis HOM05D003545 ORTHO05D004720 3.1e-20 101.3 68 73.5
Medtr1g105940 Medicago truncatula HOM05D003545 ORTHO05D004720 3.1e-20 101.3 68 73.5
Medtr4g109100 Medicago truncatula HOM05D003545 ORTHO05D004720 3.1e-20 101.3 68 73.5
CAN.G911.7 Capsicum annuum HOM05D003545 ORTHO05D004720 4.1e-20 100.9 68 73.5
Ca_11016_v3 Cicer arietinum L. HOM05D003545 ORTHO05D004720 4.1e-20 100.9 68 70.6
Eucgr.H00238 Eucalyptus grandis HOM05D003545 ORTHO05D004720 4.1e-20 100.9 68 72.1
RcHm_v2.0_Chr1g0328111 Rosa chinensis HOM05D003545 ORTHO05D004720 4.1e-20 100.9 68 72.1
Duzib133G1379 Durio zibethinus HOM05D003545 ORTHO05D004720 5.3e-20 100.5 68 73.5
FAN13G2420 Fragaria x ananassa HOM05D003545 ORTHO05D004720 5.3e-20 100.5 68 70.6
Aqoxy5G02074 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 6.9e-20 100.1 68 75.0
Nitab4.5_0002417g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 6.9e-20 100.1 68 73.5
Nitab4.5_0011686g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 6.9e-20 100.1 68 73.5
Peaxi162Scf00184g00109 Petunia axillaris HOM05D003545 ORTHO05D004720 6.9e-20 100.1 68 73.5
Solyc01g006800.4 Solanum lycopersicum HOM05D003545 ORTHO05D004720 6.9e-20 100.1 68 73.5
Sopen01g002780 Solanum pennellii HOM05D003545 ORTHO05D004720 6.9e-20 100.1 68 73.5
PGSC0003DMG400021374 Solanum tuberosum HOM05D003545 ORTHO05D004720 6.9e-20 100.1 68 73.5
Aqoxy5G02072 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 9.1e-20 99.8 68 73.5
CSS0015354 Camellia sinensis var. sinensis HOM05D003545 ORTHO05D004720 9.1e-20 99.8 68 72.1
Lsat_1_v5_gn_5_37781 Lactuca sativa HOM05D003545 ORTHO05D004720 1.2e-19 99.4 68 72.1
ECA246G2273 Erigeron canadensis HOM05D003545 ORTHO05D004720 1.5e-19 99.0 68 72.1
PSO063G3599 Papaver somniferum HOM05D003545 ORTHO05D004720 1.5e-19 99.0 68 72.1
PSO782G1687 Papaver somniferum HOM05D003545 ORTHO05D004720 1.5e-19 99.0 68 72.1
TAR636G2827 Trochodendron aralioides HOM05D003545 ORTHO05D004720 1.5e-19 99.0 68 72.1
BcaC01g05074 Brassica carinata HOM05D003545 ORTHO05D004720 2.0e-19 98.6 43 100.0
DCAR_005465 Daucus carota HOM05D003545 ORTHO05D004720 2.0e-19 98.6 68 72.1
Os12g0628500 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 2.0e-19 98.6 68 72.1
ATR0594G119 Amborella trichopoda HOM05D003545 ORTHO05D004720 2.6e-19 98.2 68 72.1
TWI75G0601 Tripterygium wilfordii HOM05D003545 ORTHO05D004720 2.6e-19 98.2 68 72.1
Mapoly0009s0208 Marchantia polymorpha HOM05D003545 ORTHO05D004720 3.4e-19 97.8 66 74.2
SEGI_07894 Sequoiadendron giganteum HOM05D003545 ORTHO05D004720 3.4e-19 97.8 68 70.6
Zm00001eb173260 Zea mays HOM05D003545 ORTHO05D004720 3.4e-19 97.8 68 70.6
EL10Ac3g06198 Beta vulgaris HOM05D003545 ORTHO05D004720 4.5e-19 97.4 68 72.1
CARHR139340 Cardamine hirsuta HOM05D003545 ORTHO05D004720 4.5e-19 97.4 68 70.6
AUR62002514 Chenopodium quinoa HOM05D003545 ORTHO05D004720 4.5e-19 97.4 68 73.5
AUR62023680 Chenopodium quinoa HOM05D003545 ORTHO05D004720 4.5e-19 97.4 68 73.5
MBI03_g28950_MAGBIO Magnolia biondii HOM05D003545 ORTHO05D004720 4.5e-19 97.4 68 70.6
Pp3c18_2250 Physcomitrium patens HOM05D003545 ORTHO05D004720 1.0e-18 96.3 66 71.2
Pp3c18_2370 Physcomitrium patens HOM05D003545 ORTHO05D004720 1.0e-18 96.3 66 71.2
Sc10g0003580 Simmondsia chinensis HOM05D003545 ORTHO05D004720 1.3e-18 95.9 66 69.7
Os08g0542000 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 2.2e-18 95.1 68 69.1
SMO230G0032 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 2.9e-18 94.7 66 71.2
SMO340G0246 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 2.9e-18 94.7 66 71.2
Mapoly0009s0058 Marchantia polymorpha HOM05D003545 ORTHO05D004720 6.5e-18 93.6 66 71.2
CBR_g52643 Chara braunii HOM05D003545 ORTHO05D004720 8.5e-18 93.2 68 67.6
BcaC02g10099 Brassica carinata HOM05D003545 ORTHO05D004720 2.5e-17 91.7 60 76.7
BolC4t24842H Brassica oleracea HOM05D003545 ORTHO05D004720 2.5e-17 91.7 60 76.7
C04p32790 Brassica napus HOM05D003545 ORTHO05D004720 3.2e-17 91.3 60 76.7
HPP92_003411 Vanilla planifolia HOM05D003545 ORTHO05D004720 1.6e-16 89.0 68 63.2
SMO367G0222 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 3.6e-16 87.8 66 69.7
AagrBONN_evm.TU.Sc2ySwM_362.208 Anthoceros agrestis HOM05D003545 ORTHO05D004720 4.7e-16 87.4 66 66.7
PRCOL_00002364 Prasinoderma coloniale HOM05D003545 ORTHO05D004720 1.7e-13 79.0 68 54.4
MCO01G510 Micromonas commoda HOM05D003545 ORTHO05D004720 2.8e-13 78.2 68 54.4
Cre16.g652100 Chlamydomonas reinhardtii HOM05D003545 ORTHO05D004720 3.7e-13 77.8 63 60.3
AagrBONN_evm.TU.Sc2ySwM_362.217 Anthoceros agrestis HOM05D003545 ORTHO05D004720 1.1e-12 76.3 55 70.9
Haze_26740 Corylus avellana HOM05D003545 ORTHO05D004720 1.1e-12 76.3 68 55.9
AL4G43130 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 2.0e-11 72.0 51 66.7
unitig_747.g21724 Utricularia gibba HOM05D003545 ORTHO05D004720 1.3e-10 69.3 30 96.7
BcaC07g40535 Brassica carinata HOM05D003545 ORTHO05D004720 3.2e-09 64.7 31 87.1
BolC9t56447H Brassica oleracea HOM05D003545 ORTHO05D024095 2.1e-08 62.0 59 59.3


User provided reference genes

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