Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03206 Brassica carinata HOM05D000838 ORTHO05D000656 1.5e-44 182.6 100 100.0
BcaC03g16514 Brassica carinata HOM05D000838 ORTHO05D000656 1.5e-28 129.4 94 77.7
C02p43320 Brassica napus HOM05D000838 ORTHO05D000656 1.5e-28 129.4 94 77.7
BolC2t10382H Brassica oleracea HOM05D000838 ORTHO05D000656 4.4e-28 127.9 96 78.1
A02p27440 Brassica napus HOM05D000838 ORTHO05D000656 1.3e-27 126.3 101 74.3
BraA02t07773Z Brassica rapa HOM05D000838 ORTHO05D000656 1.3e-27 126.3 101 74.3
BcaB01g00391 Brassica carinata HOM05D000838 ORTHO05D000656 2.7e-25 118.6 77 90.9
BcaB07g30605 Brassica carinata HOM05D000838 ORTHO05D000656 1.1e-23 113.2 119 60.5
Sp2g07220 Schrenkiella parvula HOM05D000838 ORTHO05D000656 2.6e-20 102.1 91 62.6
Carub.0008s0626 Capsella rubella HOM05D000838 ORTHO05D000656 7.6e-20 100.5 90 58.9
AL8G18460 Arabidopsis lyrata HOM05D000838 ORTHO05D000656 1.3e-19 99.8 90 61.1
Aa31LG9G12760 Aethionema arabicum HOM05D000838 ORTHO05D000656 2.4e-18 95.5 86 59.3
AT5G42700 Arabidopsis thaliana HOM05D000838 ORTHO05D000656 2.7e-17 92.0 90 56.7
Potri.014G031700 Populus trichocarpa HOM05D000838 ORTHO05D000656 4.3e-15 84.7 88 51.1
Gohir.A01G119000 Gossypium hirsutum HOM05D000838 ORTHO05D000656 5.6e-15 84.3 89 53.9
Gohir.D01G107200 Gossypium hirsutum HOM05D000838 ORTHO05D000656 2.1e-14 82.4 88 53.4
Gorai.002G131600 Gossypium raimondii HOM05D000838 ORTHO05D000656 2.1e-14 82.4 88 53.4
THA.LOC104813207 Tarenaya hassleriana HOM05D000838 ORTHO05D000656 2.8e-14 82.0 89 51.7
ClCG08G015750 Citrullus lanatus HOM05D000838 ORTHO05D000656 4.8e-14 81.3 88 47.7
Duzib116G0471 Durio zibethinus HOM05D000838 ORTHO05D000656 4.8e-14 81.3 88 51.1
Sabra14G0022300 Salix brachista HOM05D001625 ORTHO05D002663 4.8e-14 81.3 88 51.1
FAN15G2307 Fragaria x ananassa HOM05D000838 ORTHO05D000656 6.2e-14 80.9 94 47.9
FAN27G1081 Fragaria x ananassa HOM05D000838 ORTHO05D000656 6.2e-14 80.9 94 47.9
CsaV3_2G028000 Cucumis sativus L. HOM05D000838 ORTHO05D000656 8.1e-14 80.5 88 48.9
THA.LOC104799348 Tarenaya hassleriana HOM05D000838 ORTHO05D000656 8.1e-14 80.5 89 49.4
Potri.014G031600 Populus trichocarpa HOM05D000838 ORTHO05D000656 1.1e-13 80.1 88 50.0
MELO3C010880.2 Cucumis melo HOM05D000838 ORTHO05D000656 1.4e-13 79.7 88 48.9
RcHm_v2.0_Chr6g0307581 Rosa chinensis HOM05D000838 ORTHO05D000656 1.4e-13 79.7 94 48.9
RcHm_v2.0_Chr6g0307731 Rosa chinensis HOM05D000838 ORTHO05D000656 1.4e-13 79.7 94 48.9
TWI36G1517 Tripterygium wilfordii HOM05D000838 ORTHO05D000656 1.4e-13 79.7 90 46.7
FAN20G2440 Fragaria x ananassa HOM05D000838 ORTHO05D000656 2.4e-13 79.0 94 47.9
FvH4_2g34580 Fragaria vesca HOM05D000838 ORTHO05D000656 3.1e-13 78.6 94 46.8
Sed0026519 Sechium edule HOM05D000838 ORTHO05D000656 4.0e-13 78.2 88 47.7
CANSAT11G2709 Cannabis sativa HOM05D000838 ORTHO05D000656 6.9e-13 77.4 97 44.3
Sed0019706 Sechium edule HOM05D000838 ORTHO05D000656 1.2e-12 76.6 88 46.6
Thecc.08G010600 Theobroma cacao HOM05D000838 ORTHO05D000656 1.2e-12 76.6 89 50.6
Ciclev10002314m.g Citrus clementina HOM05D000838 ORTHO05D000656 2.6e-12 75.5 97 41.2
COL.COLO4_26481 Corchorus olitorius HOM05D000838 ORTHO05D000656 3.4e-12 75.1 88 52.3
Glyma.06G038900 Glycine max HOM05D000838 ORTHO05D000656 3.4e-12 75.1 93 45.2
Atru.chr13.654 Acer truncatum HOM05D000838 ORTHO05D000656 5.8e-12 74.3 99 45.5
Ca_15955_v3 Cicer arietinum L. HOM05D000838 ORTHO05D000656 5.8e-12 74.3 94 44.7
Lj1g0022581 Lotus japonicus HOM05D000838 ORTHO05D000656 7.6e-12 73.9 53 62.3
Lj1g0006917 Lotus japonicus HOM05D000838 ORTHO05D000656 1.0e-11 73.6 103 45.6
Prupe.1G438000 Prunus persica HOM05D000838 ORTHO05D000656 1.0e-11 73.6 90 45.6
MD08G1102900 Malus domestica HOM05D000838 ORTHO05D000656 1.7e-11 72.8 91 42.9
MD15G1084400 Malus domestica HOM05D000838 ORTHO05D000656 1.7e-11 72.8 92 42.4
RcHm_v2.0_Chr6g0307571 Rosa chinensis HOM05D000838 ORTHO05D000656 1.7e-11 72.8 88 46.6
RcHm_v2.0_Chr6g0307721 Rosa chinensis HOM05D000838 ORTHO05D000656 1.7e-11 72.8 88 46.6
GSVIVG01009519001 Vitis vinifera HOM05D000838 ORTHO05D000656 1.7e-11 72.8 93 46.2
Prupe.1G437900 Prunus persica HOM05D000838 ORTHO05D000656 2.2e-11 72.4 90 45.6
Lalb_Chr23g0267011 Lupinus albus HOM05D000838 ORTHO05D000656 3.8e-11 71.6 88 44.3
TPR.G24380 Trifolium pratense HOM05D000838 ORTHO05D000656 6.5e-11 70.9 55 58.2
Psat5g043480 Pisum sativum HOM05D000838 ORTHO05D000656 8.4e-11 70.5 95 44.2
Glyma.04G037800 Glycine max HOM05D000838 ORTHO05D000656 1.4e-10 69.7 102 42.2
vmacro04456 Vaccinium macrocarpon HOM05D000838 ORTHO05D000656 1.4e-10 69.7 94 42.6
VMungo1309G0097 Vigna mungo HOM05D000838 ORTHO05D000656 1.9e-10 69.3 100 42.0
Ah.01g006690 Amaranthus hybridus HOM05D000838 ORTHO05D000656 2.5e-10 68.9 52 55.8
FvH4_2g34591 Fragaria vesca HOM05D000838 ORTHO05D000656 2.5e-10 68.9 88 44.3
Medtr3g101520 Medicago truncatula HOM05D000838 ORTHO05D000656 2.5e-10 68.9 95 44.2
SGA_v2.0_scaffold208G41985 Striga asiatica HOM05D000838 ORTHO05D000656 2.5e-10 68.9 88 45.5
arahy.Tifrunner.gnm1.ann1.H1PS0M Arachis hypogaea HOM05D000838 ORTHO05D000656 3.2e-10 68.6 105 41.9
CSS0027910 Camellia sinensis var. sinensis HOM05D000838 ORTHO05D000656 3.2e-10 68.6 81 43.2
Psat5g077200 Pisum sativum HOM05D000838 ORTHO05D000656 3.2e-10 68.6 94 41.5
TPR.G28118 Trifolium pratense HOM05D000838 ORTHO05D000656 3.2e-10 68.6 55 56.4
arahy.Tifrunner.gnm1.ann1.6FQ15B Arachis hypogaea HOM05D000838 ORTHO05D000656 4.2e-10 68.2 108 41.7
Lj4A86T100 Lonicera japonica HOM05D000838 ORTHO05D000656 4.2e-10 68.2 91 39.6
EL10Ac9g21833 Beta vulgaris HOM05D000838 ORTHO05D000656 5.5e-10 67.8 52 57.7
TWI75G0645 Tripterygium wilfordii HOM05D000838 ORTHO05D000656 5.5e-10 67.8 52 59.6
Aa31LG8G5980 Aethionema arabicum HOM05D000838 ORTHO05D000656 7.1e-10 67.4 50 60.0
MSTRG.1338 Avicennia marina HOM05D000838 ORTHO05D000656 7.1e-10 67.4 99 42.4
Rhsim07G0229600 Rhododendron simsii HOM05D000838 ORTHO05D000656 7.1e-10 67.4 93 40.9
Sed0024658 Sechium edule HOM05D000838 ORTHO05D000656 7.1e-10 67.4 88 43.2
Sc26g0004010 Simmondsia chinensis HOM05D000838 ORTHO05D000656 7.1e-10 67.4 91 41.8
Lj4C852G0 Lonicera japonica HOM05D000838 ORTHO05D000656 9.3e-10 67.0 91 46.2
Psat5g077240 Pisum sativum HOM05D000838 ORTHO05D000656 9.3e-10 67.0 87 43.7
PGR142G0059 Punica granatum HOM05D000838 ORTHO05D000656 9.3e-10 67.0 80 46.2
Aqoxy4G03307 Aquilegia oxysepala HOM05D000838 ORTHO05D000656 1.2e-09 66.6 104 44.2
AL3G32560 Arabidopsis lyrata HOM05D000838 ORTHO05D000656 1.2e-09 66.6 53 56.6
Cc08_g05820 Coffea canephora HOM05D000838 ORTHO05D000656 1.2e-09 66.6 50 60.0
MELO3C010881.2 Cucumis melo HOM05D000838 ORTHO05D000656 1.2e-09 66.6 98 40.8
Eucgr.F02358 Eucalyptus grandis HOM05D000838 ORTHO05D000656 1.6e-09 66.2 88 46.6
SHI05376 Sapria himalayana HOM05D000838 ORTHO05D000656 1.6e-09 66.2 51 56.9
Carub.0003s1901 Capsella rubella HOM05D000838 ORTHO05D000656 2.1e-09 65.9 50 60.0
CAN.G1041.25 Capsicum annuum HOM05D000838 ORTHO05D000656 2.1e-09 65.9 96 38.5
Lalb_Chr08g0245601 Lupinus albus HOM05D000838 ORTHO05D000656 2.1e-09 65.9 90 38.9
Manes.10G066000 Manihot esculenta HOM05D000838 ORTHO05D000656 2.1e-09 65.9 97 44.3
Oeu043553.1 Olea europaea HOM05D000838 ORTHO05D000656 2.1e-09 65.9 82 42.7
PGR031G1572 Punica granatum HOM05D000838 ORTHO05D000656 2.1e-09 65.9 88 45.5
CsaV3_2G028010 Cucumis sativus L. HOM05D000838 ORTHO05D000656 2.7e-09 65.5 88 43.2
ECA234G0186 Erigeron canadensis HOM05D000838 ORTHO05D000656 2.7e-09 65.5 53 58.5
HanXRQChr10g0289011 Helianthus annuus HOM05D000838 ORTHO05D000656 2.7e-09 65.5 98 39.8
HanXRQChr10g0301701 Helianthus annuus HOM05D000838 ORTHO05D000656 2.7e-09 65.5 98 39.8
Phvul.009G064100 Phaseolus vulgaris HOM05D000838 ORTHO05D000656 2.7e-09 65.5 90 38.9
Potri.009G103100 Populus trichocarpa HOM05D000838 ORTHO05D000656 2.7e-09 65.5 50 56.0
Ciclev10029072m.g Citrus clementina HOM05D000838 ORTHO05D000656 3.5e-09 65.1 50 54.0
Thhalv10019015m.g Eutrema salsugineum HOM05D000838 ORTHO05D000656 3.5e-09 65.1 50 62.0
Ah.05g168800 Amaranthus hybridus HOM05D000838 ORTHO05D000656 4.6e-09 64.7 92 44.6
CSS0010825 Camellia sinensis var. sinensis HOM05D000838 ORTHO05D000656 4.6e-09 64.7 52 59.6
CSS0031460 Camellia sinensis var. sinensis HOM05D000838 ORTHO05D000656 4.6e-09 64.7 52 59.6
ClCG02G005860 Citrullus lanatus HOM05D000838 ORTHO05D000656 4.6e-09 64.7 50 58.0
FAN27G2722 Fragaria x ananassa HOM05D000838 ORTHO05D000656 4.6e-09 64.7 55 50.9
MD15G1084300 Malus domestica HOM05D000838 ORTHO05D000656 4.6e-09 64.7 91 38.5
CARHR094590 Cardamine hirsuta HOM05D000838 ORTHO05D000656 6.0e-09 64.3 50 54.0
DCAR_019459 Daucus carota HOM05D000838 ORTHO05D008114 6.0e-09 64.3 50 54.0
ECA247G1689 Erigeron canadensis HOM05D000838 ORTHO05D000656 6.0e-09 64.3 91 41.8
Nitab4.5_0003080g0120 Nicotiana tabacum HOM05D000838 ORTHO05D000656 6.0e-09 64.3 52 53.8
Os06g0194400 Oryza sativa ssp. japonica HOM05D000838 ORTHO05D000656 6.0e-09 64.3 52 51.9
AT3G19184 Arabidopsis thaliana HOM05D000838 ORTHO05D000656 7.9e-09 63.9 53 52.8
MBI02_g17330_MAGBIO Magnolia biondii HOM05D000838 ORTHO05D000656 7.9e-09 63.9 90 42.2
MD08G1102800 Malus domestica HOM05D000838 ORTHO05D000656 7.9e-09 63.9 91 37.4
Actinidia29867 Actinidia chinensis HOM05D000838 ORTHO05D000656 1.0e-08 63.5 92 40.2
CiPaw.06G143100 Carya illinoinensis HOM05D000838 ORTHO05D000656 1.0e-08 63.5 50 52.0
MELO3C018443.2 Cucumis melo HOM05D000838 ORTHO05D000656 1.0e-08 63.5 50 58.0
Lsat_1_v5_gn_1_20940 Lactuca sativa HOM05D000838 ORTHO05D000656 1.0e-08 63.5 50 56.0
Nitab4.5_0003503g0050 Nicotiana tabacum HOM05D000838 ORTHO05D000656 1.0e-08 63.5 96 38.5
QL02p005325 Quercus lobata HOM05D000838 ORTHO05D000656 1.0e-08 63.5 94 41.5
PGSC0003DMG400025792 Solanum tuberosum HOM05D000838 ORTHO05D000656 1.0e-08 63.5 96 37.5
TAR381G0125 Trochodendron aralioides HOM05D000838 ORTHO05D000656 1.0e-08 63.5 100 38.0
CiPaw.05G052000 Carya illinoinensis HOM05D000838 ORTHO05D000656 1.3e-08 63.2 50 50.0
AUR62011442 Chenopodium quinoa HOM05D000838 ORTHO05D000656 1.3e-08 63.2 52 50.0
Dinv35971 Davidia involucrata HOM05D001625 ORTHO05D008114 1.3e-08 63.2 96 37.5
Migut.C00592 Erythranthe guttata HOM05D000838 ORTHO05D000656 1.3e-08 63.2 50 54.0
Hma1.2p1_0718F.1_g208390 Hydrangea macrophylla HOM05D000838 ORTHO05D000656 1.3e-08 63.2 92 41.3
Sc11g0004210 Simmondsia chinensis HOM05D000838 ORTHO05D000656 1.3e-08 63.2 98 40.8
Aqoxy6G03020 Aquilegia oxysepala HOM05D000838 ORTHO05D000656 1.8e-08 62.8 50 56.0
MSTRG.16750 Avicennia marina HOM05D000838 ORTHO05D000656 1.8e-08 62.8 99 41.4
AUR62016620 Chenopodium quinoa HOM05D000838 ORTHO05D000656 1.8e-08 62.8 52 50.0
Actinidia38054 Actinidia chinensis HOM05D000838 ORTHO05D000656 3.0e-08 62.0 92 40.2
BcaC08g47520 Brassica carinata HOM05D000838 ORTHO05D000656 3.0e-08 62.0 50 54.0
A07p44620 Brassica napus HOM05D002614 ORTHO05D002794 3.0e-08 62.0 50 54.0
BolC6t40361H Brassica oleracea HOM05D002614 ORTHO05D002794 3.0e-08 62.0 50 54.0
BraA07t31971Z Brassica rapa HOM05D002614 ORTHO05D002794 3.0e-08 62.0 50 54.0
Cc10_g04280 Coffea canephora HOM05D000838 ORTHO05D000656 3.0e-08 62.0 88 40.9
vmacro15069 Vaccinium macrocarpon HOM05D000838 ORTHO05D000656 3.0e-08 62.0 101 41.6
Actinidia17866 Actinidia chinensis HOM05D000838 ORTHO05D000656 3.9e-08 61.6 102 40.2
EL10Ac1g01718 Beta vulgaris HOM05D000838 ORTHO05D000656 3.9e-08 61.6 95 38.9
Dinv42147 Davidia involucrata HOM05D000838 ORTHO05D000656 3.9e-08 61.6 100 41.0
Lsat_1_v5_gn_5_112901 Lactuca sativa HOM05D000838 ORTHO05D000656 3.9e-08 61.6 98 40.8
Sc26g0004000 Simmondsia chinensis HOM05D000838 ORTHO05D000656 3.9e-08 61.6 94 41.5
vmacro19495 Vaccinium macrocarpon HOM05D000838 ORTHO05D000656 3.9e-08 61.6 49 57.1
HPP92_009383 Vanilla planifolia HOM05D000838 ORTHO05D000656 3.9e-08 61.6 88 39.8
Hund17580 Selenicereus undatus HOM05D000838 ORTHO05D000656 5.1e-08 61.2 92 41.3
Solyc01g108140.4 Solanum lycopersicum HOM05D000838 ORTHO05D000656 5.1e-08 61.2 96 38.5
Sopen01g050370 Solanum pennellii HOM05D000838 ORTHO05D000656 5.1e-08 61.2 96 38.5
C06p53460 Brassica napus HOM05D002614 ORTHO05D002794 6.7e-08 60.8 50 52.0
CsaV3_7G008670 Cucumis sativus L. HOM05D000838 ORTHO05D000656 6.7e-08 60.8 82 45.1
THA.LOC104798798 Tarenaya hassleriana HOM05D000838 ORTHO05D000656 8.7e-08 60.5 50 56.0
TWI79G0856 Tripterygium wilfordii HOM05D000838 ORTHO05D000656 8.7e-08 60.5 90 42.2
Duzib132G1154 Durio zibethinus HOM05D000838 ORTHO05D000656 1.1e-07 60.1 86 40.7
Eucgr.G01455 Eucalyptus grandis HOM05D000838 ORTHO05D000656 1.1e-07 60.1 85 42.4
Sp5g34660 Schrenkiella parvula HOM05D000838 ORTHO05D000656 1.1e-07 60.1 50 56.0
QL11p036107 Quercus lobata HOM05D000838 ORTHO05D000656 1.5e-07 59.7 84 41.7
Sed0001768 Sechium edule HOM05D000838 ORTHO05D000656 1.5e-07 59.7 50 54.0
Atru.chr5.2734 Acer truncatum HOM05D000838 ORTHO05D000656 1.9e-07 59.3 50 52.0
Cpa.g.sc62.23 Carica papaya HOM05D000838 ORTHO05D000656 1.9e-07 59.3 50 52.0
Haze_01838 Corylus avellana HOM05D000838 ORTHO05D000656 1.9e-07 59.3 50 48.0
Haze_01843 Corylus avellana HOM05D000838 ORTHO05D000656 1.9e-07 59.3 50 48.0
AUR62022423 Chenopodium quinoa HOM05D000838 ORTHO05D000656 2.5e-07 58.9 95 38.9
AUR62042177 Chenopodium quinoa HOM05D000838 ORTHO05D000656 2.5e-07 58.9 95 38.9
Oeu009750.1 Olea europaea HOM05D000838 ORTHO05D000656 2.5e-07 58.9 98 36.7
GSVIVG01031761001 Vitis vinifera HOM05D000838 ORTHO05D000656 2.5e-07 58.9 99 42.4
Zm00001eb171080 Zea mays HOM05D000838 ORTHO05D000656 2.5e-07 58.9 85 38.8
FAN20G1141 Fragaria x ananassa HOM05D000838 ORTHO05D000656 3.3e-07 58.5 88 40.9
HanXRQChr02g0037701 Helianthus annuus HOM05D000838 ORTHO05D000656 3.3e-07 58.5 91 38.5
Zm00001eb413890 Zea mays HOM05D000838 ORTHO05D000656 3.3e-07 58.5 50 46.0
Thecc.02G099300 Theobroma cacao HOM05D000838 ORTHO05D000656 4.3e-07 58.2 98 36.7
Gohir.A13G039500 Gossypium hirsutum HOM05D000838 ORTHO05D000656 5.7e-07 57.8 94 38.3
Sabra09G0079000 Salix brachista HOM05D000838 ORTHO05D000656 5.7e-07 57.8 105 39.0
CDE12G0648 Ceratophyllum demersum HOM05D000838 ORTHO05D000656 7.4e-07 57.4 101 37.6
CAN.G371.32 Capsicum annuum HOM05D000838 ORTHO05D000656 9.6e-07 57.0 89 37.1
Gohir.D13G038100 Gossypium hirsutum HOM05D000838 ORTHO05D000656 1.3e-06 56.6 111 36.0
Gorai.013G042700 Gossypium raimondii HOM05D000838 ORTHO05D000656 1.3e-06 56.6 111 36.0
Atru.chr5.2735 Acer truncatum HOM05D000838 ORTHO05D000656 2.1e-06 55.8 91 40.7
SalBow6G2508 Salvia bowleyana HOM05D000838 ORTHO05D000656 2.1e-06 55.8 97 38.1
SGA_v2.0_scaffold90G27669 Striga asiatica HOM05D000838 ORTHO05D000656 2.1e-06 55.8 98 36.7
COL.COLO4_12449 Corchorus olitorius HOM05D000447 ORTHO05D000315 3.7e-06 55.1 46 43.5
Hund06179 Selenicereus undatus HOM05D000838 ORTHO05D000656 3.7e-06 55.1 52 51.9
Ciclev10030084m.g Citrus clementina HOM05D000838 ORTHO05D000656 6.2e-06 54.3 50 44.0
MBI06_g24643_MAGBIO Magnolia biondii HOM05D000838 ORTHO05D000656 6.2e-06 54.3 93 36.6
PGSC0003DMG400008022 Solanum tuberosum HOM05D000838 ORTHO05D000656 8.2e-06 53.9 89 37.1
TAR628G1072 Trochodendron aralioides HOM05D000838 ORTHO05D000656 8.2e-06 53.9 46 50.0


User provided reference genes

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