Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03134 Brassica carinata HOM05D007264 ORTHO05D008639 1.0e-72 276.9 177 100.0
Sp4g11990 Schrenkiella parvula HOM05D007264 ORTHO05D008639 9.9e-55 217.2 177 78.0
Thhalv10017315m.g Eutrema salsugineum HOM05D007264 ORTHO05D008639 6.4e-54 214.5 177 86.4
AL41U10070 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 2.0e-47 193.0 177 68.4
AL4G23740 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 2.0e-47 193.0 177 68.4
BcaB01g03133 Brassica carinata HOM05D007264 ORTHO05D008639 2.4e-45 186.0 133 81.2
AT2G29180 Arabidopsis thaliana HOM05D007264 ORTHO05D008639 4.2e-45 185.3 177 63.8
CARHR122460 Cardamine hirsuta HOM05D007264 ORTHO05D008639 1.2e-44 183.7 177 62.7
Carub.0004s1020 Capsella rubella HOM05D007264 ORTHO05D008639 2.7e-44 182.6 176 61.9
BcaC03g18293 Brassica carinata HOM05D007264 ORTHO05D008639 1.5e-34 150.2 178 57.3
C02p63690 Brassica napus HOM05D007264 ORTHO05D008639 1.5e-34 150.2 178 57.3
BolC2t12437H Brassica oleracea HOM05D007264 ORTHO05D008639 1.3e-33 147.1 178 56.7
BraA02t09285Z Brassica rapa HOM05D007264 ORTHO05D008639 6.9e-32 141.4 182 55.5
A02p43580 Brassica napus HOM05D007264 ORTHO05D008639 9.9e-31 137.5 182 55.5
Aa31LG5G7130 Aethionema arabicum HOM05D007264 ORTHO05D008639 1.1e-29 134.0 175 51.4
THA.LOC104800684 Tarenaya hassleriana HOM05D007264 ORTHO05D008639 1.3e-22 110.5 180 45.6
Dinv17036 Davidia involucrata HOM05D007264 ORTHO05D008639 2.8e-17 92.8 183 47.0
Dinv42982 Davidia involucrata HOM05D007264 ORTHO05D008639 2.8e-17 92.8 183 47.0
Dinv43117 Davidia involucrata HOM05D007264 ORTHO05D008639 2.8e-17 92.8 183 47.0
TWI79G0692 Tripterygium wilfordii HOM05D007264 ORTHO05D008639 6.5e-14 81.6 175 39.4
Gohir.D07G104200 Gossypium hirsutum HOM05D007264 ORTHO05D008639 1.9e-13 80.1 170 41.8
Cpa.g.sc81.107 Carica papaya HOM05D007264 ORTHO05D008639 7.2e-13 78.2 178 44.9
AUR62001749 Chenopodium quinoa HOM05D007264 ORTHO05D008639 7.2e-13 78.2 156 46.8
Gohir.A07G099900 Gossypium hirsutum HOM05D007264 ORTHO05D008639 9.3e-13 77.8 178 39.9
AUR62020022 Chenopodium quinoa HOM05D007264 ORTHO05D008639 1.6e-12 77.0 107 43.0
Gorai.001G112100 Gossypium raimondii HOM05D007264 ORTHO05D008639 1.6e-12 77.0 172 39.0
COL.COLO4_18565 Corchorus olitorius HOM05D007264 ORTHO05D008639 2.7e-12 76.3 184 40.8
CSS0034107 Camellia sinensis var. sinensis HOM05D007264 ORTHO05D008639 4.6e-12 75.5 175 40.0
Duzib168G0085 Durio zibethinus HOM05D007264 ORTHO05D008639 7.9e-12 74.7 179 47.5
Eucgr.J02035 Eucalyptus grandis HOM05D007264 ORTHO05D008639 7.9e-12 74.7 174 35.6
Cfa011538 Carpinus fangiana HOM05D007264 ORTHO05D008639 1.3e-11 73.9 173 38.7
Haze_24148 Corylus avellana HOM05D007264 ORTHO05D008639 1.3e-11 73.9 176 37.5
QL01p030632 Quercus lobata HOM05D007264 ORTHO05D008639 2.3e-11 73.2 173 35.3
Aqoxy1G00887 Aquilegia oxysepala HOM05D007264 ORTHO05D008639 5.1e-11 72.0 172 41.9
Nn8g40679 Nelumbo nucifera HOM05D007264 ORTHO05D008639 5.1e-11 72.0 127 40.2
ClCG02G019960 Citrullus lanatus HOM05D007264 ORTHO05D008639 6.7e-11 71.6 170 44.1
Ciclev10029397m.g Citrus clementina HOM05D007264 ORTHO05D008639 6.7e-11 71.6 176 34.7
ECA248G2900 Erigeron canadensis HOM05D007264 ORTHO05D008639 6.7e-11 71.6 163 41.7
Potri.001G243500 Populus trichocarpa HOM05D007264 ORTHO05D008639 1.1e-10 70.9 182 39.6
Lsat_1_v5_gn_5_169441 Lactuca sativa HOM05D007264 ORTHO05D008639 1.5e-10 70.5 113 42.5
Sed0006840 Sechium edule HOM05D007264 ORTHO05D008639 1.9e-10 70.1 171 35.7
Thecc.09G317100 Theobroma cacao HOM05D007264 ORTHO05D008639 1.9e-10 70.1 176 38.1
CiPaw.14G066400 Carya illinoinensis HOM05D007264 ORTHO05D008639 5.7e-10 68.6 174 43.1
Peaxi162Scf00038g02028 Petunia axillaris HOM05D007264 ORTHO05D008639 5.7e-10 68.6 116 40.5
Actinidia33776 Actinidia chinensis HOM05D007264 ORTHO05D008639 7.4e-10 68.2 153 45.8
arahy.Tifrunner.gnm1.ann1.4DS88F Arachis hypogaea HOM05D007264 ORTHO05D008639 1.3e-09 67.4 104 38.5
arahy.Tifrunner.gnm1.ann1.EHGE9H Arachis hypogaea HOM05D007264 ORTHO05D008639 1.3e-09 67.4 104 39.4
Manes.01G170100 Manihot esculenta HOM05D007264 ORTHO05D008639 1.3e-09 67.4 154 41.6
PGR119G0519 Punica granatum HOM05D007264 ORTHO05D008639 1.3e-09 67.4 159 35.8
MELO3C025896.2 Cucumis melo HOM05D007264 ORTHO05D008639 3.7e-09 65.9 179 39.1
MSTRG.11098 Avicennia marina HOM05D007264 ORTHO05D008639 4.8e-09 65.5 113 42.5
TAR623G1366 Trochodendron aralioides HOM05D007264 ORTHO05D008639 6.3e-09 65.1 165 33.9
MD03G1086900 Malus domestica HOM05D007264 ORTHO05D008639 8.2e-09 64.7 195 32.8
Nn2g13417 Nelumbo nucifera HOM05D007264 ORTHO05D008639 8.2e-09 64.7 109 41.3
TAR560G0010 Trochodendron aralioides HOM05D007264 ORTHO05D008639 8.2e-09 64.7 183 33.3
vmacro03038 Vaccinium macrocarpon HOM05D007264 ORTHO05D008639 8.2e-09 64.7 171 33.3
GSVIVG01024917001 Vitis vinifera HOM05D007264 ORTHO05D008639 8.2e-09 64.7 117 49.6
Prupe.6G071500 Prunus persica HOM05D007264 ORTHO05D008639 1.1e-08 64.3 176 34.7
EL10Ac7g16055 Beta vulgaris HOM05D007264 ORTHO05D008639 1.4e-08 63.9 101 36.6
CsaV3_6G016660 Cucumis sativus L. HOM05D007264 ORTHO05D008639 1.8e-08 63.5 130 43.1
Cc01_g13240 Coffea canephora HOM05D007264 ORTHO05D008639 2.4e-08 63.2 126 39.7
RcHm_v2.0_Chr5g0066101 Rosa chinensis HOM05D007264 ORTHO05D008639 2.4e-08 63.2 185 31.9
Sabra16G0147800 Salix brachista HOM05D007264 ORTHO05D008639 2.4e-08 63.2 166 37.3
PGSC0003DMG400014567 Solanum tuberosum HOM05D007264 ORTHO05D008639 2.4e-08 63.2 92 42.4
Nitab4.5_0006942g0010 Nicotiana tabacum HOM05D007264 ORTHO05D008639 3.1e-08 62.8 128 35.9
Sc25g0001650 Simmondsia chinensis HOM05D007264 ORTHO05D008639 5.3e-08 62.0 104 50.0
Solyc05g009300.1 Solanum lycopersicum HOM05D007264 ORTHO05D008639 5.3e-08 62.0 176 33.5
Sopen05g005050 Solanum pennellii HOM05D007264 ORTHO05D008639 5.3e-08 62.0 174 33.3
FAN25G3374 Fragaria x ananassa HOM05D007264 ORTHO05D008639 6.9e-08 61.6 175 31.4
DCAR_005951 Daucus carota HOM05D007264 ORTHO05D008639 9.0e-08 61.2 165 42.4
Hund18892 Selenicereus undatus HOM05D007264 ORTHO05D008639 9.0e-08 61.2 139 34.5
Migut.D00885 Erythranthe guttata HOM05D007264 ORTHO05D008639 1.5e-07 60.5 131 37.4
HanXRQChr01g0010441 Helianthus annuus HOM05D007264 ORTHO05D008639 1.5e-07 60.5 124 42.7
Lalb_Chr24g0394031 Lupinus albus HOM05D007264 ORTHO05D008639 1.5e-07 60.5 96 43.8
FAN21G2492 Fragaria x ananassa HOM05D007264 ORTHO05D008639 2.0e-07 60.1 175 30.9
MBI14_g08028_MAGBIO Magnolia biondii HOM05D007264 ORTHO05D008639 2.0e-07 60.1 132 35.6
MD11G1096000 Malus domestica HOM05D007264 ORTHO05D008639 2.6e-07 59.7 110 39.1
FvH4_3g36880 Fragaria vesca HOM05D007264 ORTHO05D008639 5.9e-07 58.5 182 31.3
FAN11G3606 Fragaria x ananassa HOM05D007264 ORTHO05D008639 5.9e-07 58.5 182 31.3
ATR0559G356 Amborella trichopoda HOM05D007264 ORTHO05D008639 7.7e-07 58.2 111 36.0
Nitab4.5_0014843g0020 Nicotiana tabacum HOM05D007264 ORTHO05D008639 7.7e-07 58.2 158 32.9
Medtr2g097680 Medicago truncatula HOM05D007264 ORTHO05D008639 1.0e-06 57.8 161 30.4
Lj3g0004900 Lotus japonicus HOM05D007264 ORTHO05D008639 1.7e-06 57.0 172 33.7
PSO339G5862 Papaver somniferum HOM05D007264 ORTHO05D008639 2.2e-06 56.6 115 34.8
Glyma.15G035800 Glycine max HOM05D007264 ORTHO05D008639 5.0e-06 55.5 78 52.6
Ah.15g098550 Amaranthus hybridus HOM05D007264 ORTHO05D008639 8.5e-06 54.7 143 39.9
Medtr1g071380 Medicago truncatula HOM05D007264 ORTHO05D008639 8.5e-06 54.7 161 30.4
Phvul.L007743 Phaseolus vulgaris HOM05D007264 ORTHO05D008639 8.5e-06 54.7 106 42.5


User provided reference genes

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