Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 1.7e-129 466.1 241 100.0
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 1.8e-112 409.5 242 88.8
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 1.6e-111 406.4 242 91.3
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 3.8e-110 401.7 242 90.5
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 1.5e-109 399.8 242 88.0
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 1.2e-106 390.2 245 86.9
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 7.5e-106 387.5 243 86.0
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 8.3e-105 384.0 243 85.6
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.8e-104 382.9 242 85.5
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.8e-104 382.9 242 85.5
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 3.2e-104 382.1 244 85.2
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 5.9e-103 377.9 242 84.3
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 1.5e-101 373.2 242 83.9
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 1.3e-97 360.1 245 80.8
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 6.4e-97 357.8 242 80.6
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 1.5e-93 346.7 190 95.8
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 5.2e-91 338.2 241 75.1
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 2.0e-90 336.3 243 78.2
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 3.5e-79 298.9 166 94.6
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 4.6e-71 271.9 247 61.1
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 4.3e-69 265.4 191 69.6
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 9.6e-69 264.2 195 68.2
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 2.1e-68 263.1 246 58.1
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 6.9e-67 258.1 197 67.0
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 2.0e-66 256.5 243 58.0
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 2.0e-66 256.5 237 58.6
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 4.4e-66 255.4 203 66.0
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 5.8e-66 255.0 188 68.6
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 9.9e-66 254.2 194 67.0
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 1.3e-65 253.8 193 65.8
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 2.2e-65 253.1 230 59.6
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 3.8e-65 252.3 232 58.2
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 3.8e-65 252.3 189 66.7
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 6.4e-65 251.5 188 68.6
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 1.1e-64 250.8 228 59.6
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 1.4e-64 250.4 240 56.7
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.4e-64 250.4 192 66.1
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 1.4e-64 250.4 188 67.6
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 3.2e-64 249.2 232 59.5
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 3.2e-64 249.2 191 66.0
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 3.2e-64 249.2 227 59.0
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 5.4e-64 248.4 187 68.4
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 5.4e-64 248.4 225 60.0
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 9.3e-64 247.7 192 67.7
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 1.6e-63 246.9 222 60.4
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 3.5e-63 245.7 239 57.3
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 4.6e-63 245.4 229 59.8
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 6.0e-63 245.0 243 57.6
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 7.9e-63 244.6 196 63.8
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 7.9e-63 244.6 218 59.2
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 7.9e-63 244.6 222 58.6
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 1.3e-62 243.8 211 62.1
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 1.7e-62 243.4 183 67.2
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 2.3e-62 243.0 212 61.3
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 2.3e-62 243.0 191 63.4
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 2.3e-62 243.0 241 56.0
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 2.3e-62 243.0 165 71.5
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 3.0e-62 242.7 225 59.6
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 5.1e-62 241.9 208 59.6
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 6.6e-62 241.5 208 61.1
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 6.6e-62 241.5 206 61.2
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 8.7e-62 241.1 235 57.0
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 8.7e-62 241.1 230 57.8
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 1.5e-61 240.4 229 58.1
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 1.9e-61 240.0 260 51.5
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.5e-61 239.6 191 64.4
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 2.5e-61 239.6 158 72.2
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 3.3e-61 239.2 201 62.7
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 4.3e-61 238.8 191 63.9
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 4.3e-61 238.8 193 64.8
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 7.4e-61 238.0 254 55.9
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 9.6e-61 237.7 199 59.8
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 9.6e-61 237.7 245 55.1
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 3.6e-60 235.7 238 55.0
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 4.8e-60 235.3 232 56.9
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 6.2e-60 235.0 191 63.9
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 6.2e-60 235.0 210 60.0
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 6.2e-60 235.0 167 70.7
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 8.1e-60 234.6 161 70.8
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.1e-59 234.2 232 55.2
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 4.0e-59 232.3 226 57.5
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 4.0e-59 232.3 225 57.3
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 9.0e-59 231.1 227 56.4
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 9.0e-59 231.1 227 54.2
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 1.2e-58 230.7 226 56.2
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 2.6e-58 229.6 232 57.8
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 3.4e-58 229.2 225 56.4
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 4.5e-58 228.8 210 56.7
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 2.9e-57 226.1 225 54.2
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 9.3e-56 221.1 155 67.7
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.1e-55 219.9 158 66.5
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 4.6e-55 218.8 156 67.3
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.8e-54 216.9 197 58.4
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 2.3e-54 216.5 246 52.8
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 5.1e-54 215.3 191 61.8
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 3.7e-52 209.1 180 59.4
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 1.8e-51 206.8 227 52.0
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 5.8e-50 201.8 141 70.9
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 2.7e-47 193.0 157 60.5
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 6.0e-47 191.8 191 55.0
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 7.9e-47 191.4 155 60.6
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.8e-46 190.3 156 60.9
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.7e-41 173.7 184 50.5
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 3.8e-41 172.6 156 55.8
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 3.8e-41 172.6 160 56.2
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 6.5e-41 171.8 231 46.3
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 3.2e-40 169.5 156 58.3
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 8.2e-36 154.8 194 46.4
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 3.4e-34 149.4 194 44.8
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 2.5e-32 143.3 153 48.4
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 6.1e-31 138.7 169 43.2
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 7.9e-31 138.3 156 47.4
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 2.3e-30 136.7 92 71.7
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 1.7e-28 130.6 82 73.2
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 3.7e-28 129.4 168 41.7
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.3e-25 120.9 82 68.3
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 8.5e-25 118.2 90 64.4
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 8.5e-25 118.2 148 51.4
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-23 114.4 113 53.1
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 2.1e-23 113.6 109 56.0
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 4.7e-23 112.5 92 64.1
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 1.4e-22 110.9 106 61.3
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 5.7e-21 105.5 160 41.9
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 4.1e-19 99.4 69 68.1
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-15 87.8 129 41.9
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 1.0e-14 84.7 192 34.4
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.4e-11 74.3 88 47.7
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 3.1e-11 73.2 96 46.9
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 3.1e-11 73.2 118 40.7
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 8.5e-09 65.1 114 42.1
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 8.5e-09 65.1 117 39.3
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 2.1e-07 60.5 155 28.4
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 4.7e-07 59.3 154 28.6
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 6.1e-07 58.9 171 26.9
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 6.1e-07 58.9 136 30.1
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 8.0e-07 58.5 144 29.2
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 4.0e-06 56.2 175 28.0
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 5.2e-06 55.8 188 27.7


User provided reference genes

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